PDB Short entry for 3PHD HEADER PROTEIN BINDING 03-NOV-10 3PHD TITLE CRYSTAL STRUCTURE OF HUMAN HDAC6 IN COMPLEX WITH UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE DEACETYLASE 6; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: HD6; COMPND 5 EC: 3.5.1.98; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: POLYUBIQUITIN; COMPND 9 CHAIN: E, F, G, H; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HDAC6, KIAA0901, JM21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 ROSETTA-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15-MHL; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: UBB, UBA52, UBCEP2, UBC, RPS27A, UBA80, UBCEP1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HDAC6, UBIQUITIN, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,W.QUI,M.RAVICHANDRAN,A.SCHUETZ,P.LOPPNAU,F.LI,F.MACKENZIE, AUTHOR 2 I.KOZIERADZKI,H.OUYANG,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 06-SEP-23 3PHD 1 REMARK LINK REVDAT 4 08-FEB-12 3PHD 1 JRNL REVDAT 3 23-NOV-11 3PHD 1 JRNL REVDAT 2 16-NOV-11 3PHD 1 JRNL REVDAT 1 23-FEB-11 3PHD 0 JRNL AUTH H.OUYANG,Y.O.ALI,M.RAVICHANDRAN,A.DONG,W.QIU,F.MACKENZIE, JRNL AUTH 2 S.DHE-PAGANON,C.H.ARROWSMITH,R.G.ZHAI JRNL TITL PROTEIN AGGREGATES ARE RECRUITED TO AGGRESOME BY HISTONE JRNL TITL 2 DEACETYLASE 6 VIA UNANCHORED UBIQUITIN C TERMINI. JRNL REF J.BIOL.CHEM. V. 287 2317 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22069321 JRNL DOI 10.1074/JBC.M111.273730 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 22135 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.090 REMARK 3 FREE R VALUE TEST SET COUNT : 463 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.15 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2894 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2593 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2823 REMARK 3 BIN R VALUE (WORKING SET) : 0.2585 REMARK 3 BIN FREE R VALUE : 0.2907 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.45 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 71 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3307 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 92.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.45780 REMARK 3 B22 (A**2) : -3.45780 REMARK 3 B33 (A**2) : 6.91570 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.422 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.907 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.856 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3400 ; 2.000 ; NULL REMARK 3 BOND ANGLES : 4648 ; 2.000 ; NULL REMARK 3 TORSION ANGLES : 950 ; 2.000 ; NULL REMARK 3 TRIGONAL CARBON PLANES : 55 ; 2.000 ; NULL REMARK 3 GENERAL PLANES : 530 ; 5.000 ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : 3400 ; 20.000 ; NULL REMARK 3 BAD NON-BONDED CONTACTS : 6 ; 5.000 ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 451 ; 5.000 ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3660 ; 4.000 ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.12 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.88 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.83 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PHD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062375. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03317 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22204 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.20 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 0.09100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 45.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.76700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 9.2 REMARK 200 STARTING MODEL: PDB ENTRY 3C5K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.1M AMMONIUM SULPHATE, REMARK 280 0.1M BIS-TRIS, PH 5.6, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.38400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 66.87400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 66.87400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 89.07600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 66.87400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 66.87400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.69200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 66.87400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.87400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 89.07600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 66.87400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.87400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.69200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.38400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 103 REMARK 465 PRO A 104 REMARK 465 HIS A 105 REMARK 465 PRO A 106 REMARK 465 HIS A 107 REMARK 465 GLU B 101 REMARK 465 ASP B 102 REMARK 465 MET B 103 REMARK 465 PRO B 104 REMARK 465 HIS B 105 REMARK 465 PRO B 106 REMARK 465 HIS B 107 REMARK 465 PRO C 1 REMARK 465 LEU C 2 REMARK 465 LEU C 88 REMARK 465 ASP C 89 REMARK 465 VAL C 90 REMARK 465 LYS C 91 REMARK 465 ASN C 92 REMARK 465 ILE C 93 REMARK 465 ALA C 94 REMARK 465 HIS C 95 REMARK 465 GLN C 96 REMARK 465 ASN C 97 REMARK 465 LYS C 98 REMARK 465 PHE C 99 REMARK 465 GLY C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 MET C 103 REMARK 465 PRO C 104 REMARK 465 HIS C 105 REMARK 465 PRO C 106 REMARK 465 HIS C 107 REMARK 465 PRO D 1 REMARK 465 LEU D 2 REMARK 465 PRO D 3 REMARK 465 LEU D 88 REMARK 465 ASP D 89 REMARK 465 VAL D 90 REMARK 465 LYS D 91 REMARK 465 ASN D 92 REMARK 465 ILE D 93 REMARK 465 ALA D 94 REMARK 465 HIS D 95 REMARK 465 GLN D 96 REMARK 465 ASN D 97 REMARK 465 LYS D 98 REMARK 465 PHE D 99 REMARK 465 GLY D 100 REMARK 465 GLU D 101 REMARK 465 ASP D 102 REMARK 465 MET D 103 REMARK 465 PRO D 104 REMARK 465 HIS D 105 REMARK 465 PRO D 106 REMARK 465 HIS D 107 REMARK 465 MET E 1 REMARK 465 GLN E 2 REMARK 465 ILE E 3 REMARK 465 PHE E 4 REMARK 465 VAL E 5 REMARK 465 LYS E 6 REMARK 465 THR E 7 REMARK 465 LEU E 8 REMARK 465 THR E 9 REMARK 465 GLY E 10 REMARK 465 LYS E 11 REMARK 465 THR E 12 REMARK 465 ILE E 13 REMARK 465 THR E 14 REMARK 465 LEU E 15 REMARK 465 GLU E 16 REMARK 465 VAL E 17 REMARK 465 GLU E 18 REMARK 465 PRO E 19 REMARK 465 SER E 20 REMARK 465 ASP E 21 REMARK 465 THR E 22 REMARK 465 ALA E 28 REMARK 465 LYS E 29 REMARK 465 ILE E 30 REMARK 465 GLN E 31 REMARK 465 ASP E 32 REMARK 465 LYS E 33 REMARK 465 GLU E 34 REMARK 465 GLY E 35 REMARK 465 ILE E 36 REMARK 465 PRO E 37 REMARK 465 PRO E 38 REMARK 465 ASP E 39 REMARK 465 GLN E 40 REMARK 465 GLN E 41 REMARK 465 ARG E 42 REMARK 465 LEU E 43 REMARK 465 ILE E 44 REMARK 465 PHE E 45 REMARK 465 ALA E 46 REMARK 465 GLY E 47 REMARK 465 LYS E 48 REMARK 465 GLN E 49 REMARK 465 LEU E 50 REMARK 465 GLU E 51 REMARK 465 ASP E 52 REMARK 465 GLY E 53 REMARK 465 ARG E 54 REMARK 465 THR E 55 REMARK 465 LEU E 56 REMARK 465 SER E 57 REMARK 465 ASP E 58 REMARK 465 TYR E 59 REMARK 465 ASN E 60 REMARK 465 ILE E 61 REMARK 465 GLN E 62 REMARK 465 LYS E 63 REMARK 465 GLU E 64 REMARK 465 SER E 65 REMARK 465 THR E 66 REMARK 465 VAL E 70 REMARK 465 MET F 1 REMARK 465 GLN F 2 REMARK 465 ILE F 3 REMARK 465 PHE F 4 REMARK 465 VAL F 5 REMARK 465 LYS F 6 REMARK 465 THR F 7 REMARK 465 LEU F 8 REMARK 465 THR F 9 REMARK 465 GLY F 10 REMARK 465 LYS F 11 REMARK 465 THR F 12 REMARK 465 ILE F 13 REMARK 465 THR F 14 REMARK 465 LEU F 15 REMARK 465 GLU F 16 REMARK 465 VAL F 17 REMARK 465 GLU F 18 REMARK 465 PRO F 19 REMARK 465 SER F 20 REMARK 465 ASP F 21 REMARK 465 THR F 22 REMARK 465 ILE F 23 REMARK 465 GLU F 24 REMARK 465 ASN F 25 REMARK 465 VAL F 26 REMARK 465 LYS F 27 REMARK 465 ALA F 28 REMARK 465 LYS F 29 REMARK 465 ILE F 30 REMARK 465 GLN F 31 REMARK 465 ASP F 32 REMARK 465 LYS F 33 REMARK 465 GLU F 34 REMARK 465 GLY F 35 REMARK 465 ILE F 36 REMARK 465 PRO F 37 REMARK 465 PRO F 38 REMARK 465 ASP F 39 REMARK 465 GLN F 40 REMARK 465 GLN F 41 REMARK 465 ARG F 42 REMARK 465 LEU F 43 REMARK 465 ILE F 44 REMARK 465 PHE F 45 REMARK 465 ALA F 46 REMARK 465 GLY F 47 REMARK 465 LYS F 48 REMARK 465 GLN F 49 REMARK 465 LEU F 50 REMARK 465 GLU F 51 REMARK 465 ASP F 52 REMARK 465 GLY F 53 REMARK 465 ARG F 54 REMARK 465 THR F 55 REMARK 465 LEU F 56 REMARK 465 SER F 57 REMARK 465 ASP F 58 REMARK 465 TYR F 59 REMARK 465 ASN F 60 REMARK 465 ILE F 61 REMARK 465 GLN F 62 REMARK 465 LYS F 63 REMARK 465 GLU F 64 REMARK 465 SER F 65 REMARK 465 THR F 66 REMARK 465 LEU F 67 REMARK 465 HIS F 68 REMARK 465 LEU F 69 REMARK 465 VAL F 70 REMARK 465 LEU F 71 REMARK 465 MET G 1 REMARK 465 GLN G 2 REMARK 465 ILE G 3 REMARK 465 PHE G 4 REMARK 465 LEU G 15 REMARK 465 GLU G 16 REMARK 465 SER G 20 REMARK 465 ASP G 21 REMARK 465 GLN G 31 REMARK 465 ASP G 32 REMARK 465 LYS G 33 REMARK 465 GLU G 34 REMARK 465 GLY G 35 REMARK 465 ILE G 36 REMARK 465 PRO G 37 REMARK 465 PRO G 38 REMARK 465 ASP G 39 REMARK 465 ARG G 42 REMARK 465 ALA G 46 REMARK 465 GLY G 47 REMARK 465 LYS G 48 REMARK 465 GLN G 49 REMARK 465 LEU G 50 REMARK 465 GLU G 51 REMARK 465 ASP G 52 REMARK 465 GLY G 53 REMARK 465 ARG G 54 REMARK 465 THR G 55 REMARK 465 LEU G 56 REMARK 465 SER G 57 REMARK 465 ASP G 58 REMARK 465 TYR G 59 REMARK 465 ASN G 60 REMARK 465 ILE G 61 REMARK 465 GLN G 62 REMARK 465 LYS G 63 REMARK 465 MET H 1 REMARK 465 GLN H 2 REMARK 465 ILE H 3 REMARK 465 PHE H 4 REMARK 465 ILE H 13 REMARK 465 THR H 14 REMARK 465 LEU H 15 REMARK 465 GLU H 16 REMARK 465 VAL H 17 REMARK 465 GLU H 18 REMARK 465 ASP H 21 REMARK 465 GLN H 31 REMARK 465 ASP H 32 REMARK 465 LYS H 33 REMARK 465 GLU H 34 REMARK 465 GLY H 35 REMARK 465 ILE H 36 REMARK 465 PRO H 37 REMARK 465 PRO H 38 REMARK 465 ASP H 39 REMARK 465 LYS H 48 REMARK 465 GLN H 49 REMARK 465 LEU H 50 REMARK 465 GLU H 51 REMARK 465 ASP H 52 REMARK 465 GLY H 53 REMARK 465 ARG H 54 REMARK 465 THR H 55 REMARK 465 LEU H 56 REMARK 465 SER H 57 REMARK 465 ASP H 58 REMARK 465 TYR H 59 REMARK 465 ASN H 60 REMARK 465 SER H 65 REMARK 465 THR H 66 REMARK 465 LEU H 67 REMARK 465 HIS H 68 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 1 CG CD REMARK 470 ILE A 14 CG1 CG2 CD1 REMARK 470 LEU A 19 CG CD1 CD2 REMARK 470 VAL A 21 CG1 CG2 REMARK 470 ILE A 31 CD1 REMARK 470 GLN A 32 CG CD OE1 NE2 REMARK 470 ILE A 49 CD1 REMARK 470 LEU A 54 CD1 CD2 REMARK 470 ASN A 59 CG OD1 ND2 REMARK 470 GLN A 85 CG CD OE1 NE2 REMARK 470 LEU A 88 CG CD1 CD2 REMARK 470 VAL A 90 CG1 CG2 REMARK 470 ILE A 93 CD1 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 ASP A 102 CG OD1 OD2 REMARK 470 VAL B 9 CG1 CG2 REMARK 470 ILE B 14 CG1 CD1 REMARK 470 ILE B 31 CD1 REMARK 470 ILE B 49 CD1 REMARK 470 ILE B 69 CD1 REMARK 470 HIS B 83 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 85 CG CD OE1 NE2 REMARK 470 LEU B 88 CG CD1 CD2 REMARK 470 VAL B 90 CG1 CG2 REMARK 470 ILE B 93 CG1 CG2 CD1 REMARK 470 LEU C 8 CG CD1 CD2 REMARK 470 ILE C 14 CG1 CD1 REMARK 470 LEU C 19 CG CD1 CD2 REMARK 470 ILE C 31 CG1 CG2 CD1 REMARK 470 GLN C 32 CG CD OE1 NE2 REMARK 470 VAL C 43 CG1 CG2 REMARK 470 ILE C 49 CD1 REMARK 470 LEU C 54 CD1 CD2 REMARK 470 GLN C 55 CG CD OE1 NE2 REMARK 470 ILE C 69 CD1 REMARK 470 LEU C 71 CG CD1 CD2 REMARK 470 GLN C 85 CD OE1 NE2 REMARK 470 LEU C 87 CG CD1 CD2 REMARK 470 TRP D 4 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP D 4 CZ3 CH2 REMARK 470 ILE D 14 CG1 CD1 REMARK 470 VAL D 21 CG1 CG2 REMARK 470 ILE D 31 CD1 REMARK 470 GLN D 32 CG CD OE1 NE2 REMARK 470 TYR D 48 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE D 49 CD1 REMARK 470 ILE D 69 CG2 CD1 REMARK 470 LEU D 71 CD1 CD2 REMARK 470 GLN D 85 CD OE1 NE2 REMARK 470 ILE E 23 CG1 CG2 CD1 REMARK 470 GLU E 24 CG CD OE1 OE2 REMARK 470 ASN E 25 CG OD1 ND2 REMARK 470 VAL E 26 CG1 CG2 REMARK 470 LYS E 27 CG CD CE NZ REMARK 470 LEU E 67 CG CD1 CD2 REMARK 470 LEU E 69 CG CD1 CD2 REMARK 470 LEU E 71 CG CD1 CD2 REMARK 470 ARG E 72 CG CD NE CZ NH1 NH2 REMARK 470 LEU E 73 CG CD1 CD2 REMARK 470 ARG E 74 CG CD NE CZ NH1 NH2 REMARK 470 ARG F 72 CG CD NE CZ NH1 NH2 REMARK 470 LEU F 73 CG CD1 CD2 REMARK 470 VAL G 5 CG1 CG2 REMARK 470 LYS G 6 CG CD CE NZ REMARK 470 THR G 7 OG1 CG2 REMARK 470 LEU G 8 CG CD1 CD2 REMARK 470 THR G 9 OG1 CG2 REMARK 470 LYS G 11 CG CD CE NZ REMARK 470 ILE G 13 CG1 CG2 CD1 REMARK 470 VAL G 17 CG1 CG2 REMARK 470 GLU G 18 CG CD OE1 OE2 REMARK 470 PRO G 19 CG CD REMARK 470 THR G 22 OG1 CG2 REMARK 470 ILE G 23 CG1 CG2 CD1 REMARK 470 GLU G 24 CG CD OE1 OE2 REMARK 470 ASN G 25 CG OD1 ND2 REMARK 470 VAL G 26 CG1 CG2 REMARK 470 LYS G 27 CG CD CE NZ REMARK 470 LYS G 29 CG CD CE NZ REMARK 470 ILE G 30 CG1 CG2 CD1 REMARK 470 GLN G 40 CG CD OE1 NE2 REMARK 470 GLN G 41 CG CD OE1 NE2 REMARK 470 LEU G 43 CG CD1 CD2 REMARK 470 ILE G 44 CG1 CG2 CD1 REMARK 470 GLU G 64 CG CD OE1 OE2 REMARK 470 SER G 65 OG REMARK 470 THR G 66 OG1 CG2 REMARK 470 LEU G 67 CG CD1 CD2 REMARK 470 HIS G 68 CG ND1 CD2 CE1 NE2 REMARK 470 VAL G 70 CG1 CG2 REMARK 470 LEU G 71 CG CD1 CD2 REMARK 470 LEU G 73 CG CD1 CD2 REMARK 470 VAL H 5 CG1 CG2 REMARK 470 LYS H 6 CG CD CE NZ REMARK 470 THR H 7 OG1 CG2 REMARK 470 LEU H 8 CG CD1 CD2 REMARK 470 THR H 9 OG1 CG2 REMARK 470 LYS H 11 CG CD CE NZ REMARK 470 PRO H 19 CG CD REMARK 470 SER H 20 OG REMARK 470 THR H 22 OG1 CG2 REMARK 470 ILE H 23 CG1 CG2 CD1 REMARK 470 GLU H 24 CG CD OE1 OE2 REMARK 470 ASN H 25 CG OD1 ND2 REMARK 470 VAL H 26 CG1 CG2 REMARK 470 LYS H 27 CG CD CE NZ REMARK 470 LYS H 29 CG CD CE NZ REMARK 470 ILE H 30 CG1 CG2 CD1 REMARK 470 GLN H 40 CG CD OE1 NE2 REMARK 470 GLN H 41 CG CD OE1 NE2 REMARK 470 ARG H 42 CG CD NE CZ NH1 NH2 REMARK 470 LEU H 43 CG CD1 CD2 REMARK 470 ILE H 44 CG1 CG2 CD1 REMARK 470 ILE H 61 CG1 CG2 CD1 REMARK 470 GLN H 62 CG CD OE1 NE2 REMARK 470 LYS H 63 CG CD CE NZ REMARK 470 GLU H 64 CG CD OE1 OE2 REMARK 470 VAL H 70 CG1 CG2 REMARK 470 LEU H 71 CG CD1 CD2 REMARK 470 ARG H 72 CG CD NE CZ NH1 NH2 REMARK 470 LEU H 73 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU H 73 C - N - CA ANGL. DEV. = 16.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 49 -99.61 -99.35 REMARK 500 PHE A 99 -50.37 -126.18 REMARK 500 ILE B 49 -98.93 -100.12 REMARK 500 PHE B 99 -52.46 -126.08 REMARK 500 PRO C 6 2.28 -69.11 REMARK 500 ILE C 49 -95.54 -95.20 REMARK 500 LEU C 71 26.71 49.37 REMARK 500 ILE D 49 -100.36 -107.66 REMARK 500 HIS E 68 114.96 -165.58 REMARK 500 LEU E 73 -163.26 55.68 REMARK 500 LEU G 71 -114.03 -124.73 REMARK 500 ARG G 72 99.22 -175.10 REMARK 500 LEU G 73 -57.09 -15.00 REMARK 500 ILE H 23 -83.12 -136.52 REMARK 500 LEU H 71 -158.75 -114.29 REMARK 500 ARG H 72 55.77 -141.15 REMARK 500 LEU H 73 -94.36 55.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU G 18 PRO G 19 121.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 5 SG REMARK 620 2 HIS A 7 ND1 117.4 REMARK 620 3 CYS A 75 SG 112.6 98.9 REMARK 620 4 CYS A 78 SG 117.2 100.8 107.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 25 SG REMARK 620 2 CYS A 28 SG 105.0 REMARK 620 3 CYS A 45 SG 117.7 120.2 REMARK 620 4 HIS A 52 ND1 90.3 105.5 113.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 37 SG REMARK 620 2 CYS A 40 SG 108.3 REMARK 620 3 HIS A 56 NE2 116.5 95.4 REMARK 620 4 HIS A 62 ND1 104.6 116.6 115.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 5 SG REMARK 620 2 HIS B 7 ND1 114.6 REMARK 620 3 CYS B 75 SG 110.2 102.3 REMARK 620 4 CYS B 78 SG 113.6 102.8 112.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 25 SG REMARK 620 2 CYS B 28 SG 110.9 REMARK 620 3 CYS B 45 SG 122.8 114.1 REMARK 620 4 HIS B 52 ND1 101.7 102.3 101.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 37 SG REMARK 620 2 CYS B 40 SG 113.4 REMARK 620 3 HIS B 56 NE2 115.9 97.5 REMARK 620 4 HIS B 62 ND1 102.2 117.9 110.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C2002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 5 SG REMARK 620 2 HIS C 7 ND1 119.3 REMARK 620 3 CYS C 75 SG 114.8 97.5 REMARK 620 4 CYS C 78 SG 117.2 99.3 105.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C2001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 25 SG REMARK 620 2 CYS C 28 SG 105.7 REMARK 620 3 CYS C 45 SG 115.0 116.0 REMARK 620 4 HIS C 52 ND1 104.2 111.7 103.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C2000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 37 SG REMARK 620 2 CYS C 40 SG 115.2 REMARK 620 3 HIS C 56 NE2 119.9 93.8 REMARK 620 4 HIS C 62 ND1 104.8 115.2 108.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D2002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 5 SG REMARK 620 2 HIS D 7 ND1 116.0 REMARK 620 3 CYS D 75 SG 109.5 100.0 REMARK 620 4 CYS D 78 SG 115.0 106.6 108.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D2001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 25 SG REMARK 620 2 CYS D 28 SG 102.9 REMARK 620 3 CYS D 45 SG 126.7 110.3 REMARK 620 4 HIS D 52 ND1 103.1 112.8 101.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D2000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 37 SG REMARK 620 2 CYS D 40 SG 115.3 REMARK 620 3 HIS D 56 NE2 118.5 94.5 REMARK 620 4 HIS D 62 ND1 105.7 113.8 109.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 2000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 2000 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 2002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3C5K RELATED DB: PDB REMARK 900 HIGH RESOLUTION STRUCTURE OF HDAC6 REMARK 900 RELATED ID: 3GV4 RELATED DB: PDB REMARK 900 HIGH RESOLUTION STRUCTURE OF HDAC6 REMARK 900 RELATED ID: 2ZNV RELATED DB: PDB REMARK 900 HIGH RESOLUTION STRUCTURE OF UBIQUITIN REMARK 900 RELATED ID: 3NHE RELATED DB: PDB REMARK 900 HIGH RESOLUTION STRUCTURE OF UBIQUITIN DBREF 3PHD A 1 107 UNP Q9UBN7 HDAC6_HUMAN 1109 1215 DBREF 3PHD B 1 107 UNP Q9UBN7 HDAC6_HUMAN 1109 1215 DBREF 3PHD C 1 107 UNP Q9UBN7 HDAC6_HUMAN 1109 1215 DBREF 3PHD D 1 107 UNP Q9UBN7 HDAC6_HUMAN 1109 1215 DBREF 3PHD E 1 76 UNP P62988 UBB_HUMAN 1 76 DBREF 3PHD F 1 76 UNP P62988 UBB_HUMAN 1 76 DBREF 3PHD G 1 76 UNP P62988 UBB_HUMAN 1 76 DBREF 3PHD H 1 76 UNP P62988 UBB_HUMAN 1 76 SEQRES 1 A 107 PRO LEU PRO TRP CYS PRO HIS LEU VAL ALA VAL CYS PRO SEQRES 2 A 107 ILE PRO ALA ALA GLY LEU ASP VAL THR GLN PRO CYS GLY SEQRES 3 A 107 ASP CYS GLY THR ILE GLN GLU ASN TRP VAL CYS LEU SER SEQRES 4 A 107 CYS TYR GLN VAL TYR CYS GLY ARG TYR ILE ASN GLY HIS SEQRES 5 A 107 MET LEU GLN HIS HIS GLY ASN SER GLY HIS PRO LEU VAL SEQRES 6 A 107 LEU SER TYR ILE ASP LEU SER ALA TRP CYS TYR TYR CYS SEQRES 7 A 107 GLN ALA TYR VAL HIS HIS GLN ALA LEU LEU ASP VAL LYS SEQRES 8 A 107 ASN ILE ALA HIS GLN ASN LYS PHE GLY GLU ASP MET PRO SEQRES 9 A 107 HIS PRO HIS SEQRES 1 B 107 PRO LEU PRO TRP CYS PRO HIS LEU VAL ALA VAL CYS PRO SEQRES 2 B 107 ILE PRO ALA ALA GLY LEU ASP VAL THR GLN PRO CYS GLY SEQRES 3 B 107 ASP CYS GLY THR ILE GLN GLU ASN TRP VAL CYS LEU SER SEQRES 4 B 107 CYS TYR GLN VAL TYR CYS GLY ARG TYR ILE ASN GLY HIS SEQRES 5 B 107 MET LEU GLN HIS HIS GLY ASN SER GLY HIS PRO LEU VAL SEQRES 6 B 107 LEU SER TYR ILE ASP LEU SER ALA TRP CYS TYR TYR CYS SEQRES 7 B 107 GLN ALA TYR VAL HIS HIS GLN ALA LEU LEU ASP VAL LYS SEQRES 8 B 107 ASN ILE ALA HIS GLN ASN LYS PHE GLY GLU ASP MET PRO SEQRES 9 B 107 HIS PRO HIS SEQRES 1 C 107 PRO LEU PRO TRP CYS PRO HIS LEU VAL ALA VAL CYS PRO SEQRES 2 C 107 ILE PRO ALA ALA GLY LEU ASP VAL THR GLN PRO CYS GLY SEQRES 3 C 107 ASP CYS GLY THR ILE GLN GLU ASN TRP VAL CYS LEU SER SEQRES 4 C 107 CYS TYR GLN VAL TYR CYS GLY ARG TYR ILE ASN GLY HIS SEQRES 5 C 107 MET LEU GLN HIS HIS GLY ASN SER GLY HIS PRO LEU VAL SEQRES 6 C 107 LEU SER TYR ILE ASP LEU SER ALA TRP CYS TYR TYR CYS SEQRES 7 C 107 GLN ALA TYR VAL HIS HIS GLN ALA LEU LEU ASP VAL LYS SEQRES 8 C 107 ASN ILE ALA HIS GLN ASN LYS PHE GLY GLU ASP MET PRO SEQRES 9 C 107 HIS PRO HIS SEQRES 1 D 107 PRO LEU PRO TRP CYS PRO HIS LEU VAL ALA VAL CYS PRO SEQRES 2 D 107 ILE PRO ALA ALA GLY LEU ASP VAL THR GLN PRO CYS GLY SEQRES 3 D 107 ASP CYS GLY THR ILE GLN GLU ASN TRP VAL CYS LEU SER SEQRES 4 D 107 CYS TYR GLN VAL TYR CYS GLY ARG TYR ILE ASN GLY HIS SEQRES 5 D 107 MET LEU GLN HIS HIS GLY ASN SER GLY HIS PRO LEU VAL SEQRES 6 D 107 LEU SER TYR ILE ASP LEU SER ALA TRP CYS TYR TYR CYS SEQRES 7 D 107 GLN ALA TYR VAL HIS HIS GLN ALA LEU LEU ASP VAL LYS SEQRES 8 D 107 ASN ILE ALA HIS GLN ASN LYS PHE GLY GLU ASP MET PRO SEQRES 9 D 107 HIS PRO HIS SEQRES 1 E 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 E 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 E 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 E 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 E 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 E 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 F 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 F 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 F 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 F 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 F 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 F 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 G 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 G 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 G 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 G 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 G 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 G 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 H 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 H 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 H 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 H 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 H 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 H 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HET ZN A1000 1 HET ZN A1001 1 HET ZN A1002 1 HET ZN B2000 1 HET ZN B2001 1 HET ZN B2002 1 HET ZN C2000 1 HET ZN C2001 1 HET ZN C2002 1 HET ZN D2000 1 HET ZN D2001 1 HET ZN D2002 1 HETNAM ZN ZINC ION FORMUL 9 ZN 12(ZN 2+) FORMUL 21 HOH *2(H2 O) HELIX 1 1 HIS A 7 VAL A 11 5 5 HELIX 2 2 GLY A 51 GLY A 61 1 11 HELIX 3 3 HIS A 84 ALA A 86 5 3 HELIX 4 4 LEU A 87 PHE A 99 1 13 HELIX 5 5 HIS B 7 VAL B 11 5 5 HELIX 6 6 GLY B 51 GLY B 61 1 11 HELIX 7 7 HIS B 84 ALA B 86 5 3 HELIX 8 8 LEU B 87 PHE B 99 1 13 HELIX 9 9 HIS C 7 VAL C 11 5 5 HELIX 10 10 GLY C 51 GLY C 61 1 11 HELIX 11 11 HIS D 7 VAL D 11 5 5 HELIX 12 12 GLY D 51 GLY D 61 1 11 HELIX 13 13 GLU G 24 ILE G 30 1 7 HELIX 14 14 GLU H 24 ILE H 30 1 7 SHEET 1 A 5 VAL A 43 CYS A 45 0 SHEET 2 A 5 ASN A 34 CYS A 37 -1 N TRP A 35 O TYR A 44 SHEET 3 A 5 LEU A 64 SER A 67 -1 O LEU A 66 N VAL A 36 SHEET 4 A 5 ALA A 73 CYS A 75 -1 O TRP A 74 N VAL A 65 SHEET 5 A 5 ALA A 80 VAL A 82 -1 O VAL A 82 N ALA A 73 SHEET 1 B 5 VAL B 43 CYS B 45 0 SHEET 2 B 5 ASN B 34 CYS B 37 -1 N TRP B 35 O TYR B 44 SHEET 3 B 5 LEU B 64 SER B 67 -1 O LEU B 66 N VAL B 36 SHEET 4 B 5 ALA B 73 CYS B 75 -1 O TRP B 74 N VAL B 65 SHEET 5 B 5 ALA B 80 TYR B 81 -1 O ALA B 80 N CYS B 75 SHEET 1 C 5 VAL C 43 CYS C 45 0 SHEET 2 C 5 ASN C 34 CYS C 37 -1 N TRP C 35 O TYR C 44 SHEET 3 C 5 LEU C 64 SER C 67 -1 O LEU C 66 N VAL C 36 SHEET 4 C 5 ALA C 73 CYS C 75 -1 O TRP C 74 N VAL C 65 SHEET 5 C 5 ALA C 80 HIS C 83 -1 O VAL C 82 N ALA C 73 SHEET 1 D 5 VAL D 43 CYS D 45 0 SHEET 2 D 5 ASN D 34 CYS D 37 -1 N TRP D 35 O TYR D 44 SHEET 3 D 5 LEU D 64 SER D 67 -1 O LEU D 66 N VAL D 36 SHEET 4 D 5 ALA D 73 CYS D 75 -1 O TRP D 74 N VAL D 65 SHEET 5 D 5 ALA D 80 TYR D 81 -1 O ALA D 80 N CYS D 75 LINK SG CYS A 5 ZN ZN A1002 1555 1555 2.31 LINK ND1 HIS A 7 ZN ZN A1002 1555 1555 2.02 LINK SG CYS A 25 ZN ZN A1001 1555 1555 2.36 LINK SG CYS A 28 ZN ZN A1001 1555 1555 2.33 LINK SG CYS A 37 ZN ZN A1000 1555 1555 2.21 LINK SG CYS A 40 ZN ZN A1000 1555 1555 2.31 LINK SG CYS A 45 ZN ZN A1001 1555 1555 2.32 LINK ND1 HIS A 52 ZN ZN A1001 1555 1555 2.10 LINK NE2 HIS A 56 ZN ZN A1000 1555 1555 1.99 LINK ND1 HIS A 62 ZN ZN A1000 1555 1555 1.91 LINK SG CYS A 75 ZN ZN A1002 1555 1555 2.27 LINK SG CYS A 78 ZN ZN A1002 1555 1555 2.24 LINK SG CYS B 5 ZN ZN B2002 1555 1555 2.39 LINK ND1 HIS B 7 ZN ZN B2002 1555 1555 1.99 LINK SG CYS B 25 ZN ZN B2001 1555 1555 2.22 LINK SG CYS B 28 ZN ZN B2001 1555 1555 2.42 LINK SG CYS B 37 ZN ZN B2000 1555 1555 2.20 LINK SG CYS B 40 ZN ZN B2000 1555 1555 2.21 LINK SG CYS B 45 ZN ZN B2001 1555 1555 2.17 LINK ND1 HIS B 52 ZN ZN B2001 1555 1555 2.05 LINK NE2 HIS B 56 ZN ZN B2000 1555 1555 2.04 LINK ND1 HIS B 62 ZN ZN B2000 1555 1555 1.95 LINK SG CYS B 75 ZN ZN B2002 1555 1555 2.22 LINK SG CYS B 78 ZN ZN B2002 1555 1555 2.18 LINK SG CYS C 5 ZN ZN C2002 1555 1555 2.25 LINK ND1 HIS C 7 ZN ZN C2002 1555 1555 2.09 LINK SG CYS C 25 ZN ZN C2001 1555 1555 2.31 LINK SG CYS C 28 ZN ZN C2001 1555 1555 2.39 LINK SG CYS C 37 ZN ZN C2000 1555 1555 2.14 LINK SG CYS C 40 ZN ZN C2000 1555 1555 2.26 LINK SG CYS C 45 ZN ZN C2001 1555 1555 2.29 LINK ND1 HIS C 52 ZN ZN C2001 1555 1555 1.93 LINK NE2 HIS C 56 ZN ZN C2000 1555 1555 2.05 LINK ND1 HIS C 62 ZN ZN C2000 1555 1555 2.01 LINK SG CYS C 75 ZN ZN C2002 1555 1555 2.28 LINK SG CYS C 78 ZN ZN C2002 1555 1555 2.25 LINK SG CYS D 5 ZN ZN D2002 1555 1555 2.41 LINK ND1 HIS D 7 ZN ZN D2002 1555 1555 1.97 LINK SG CYS D 25 ZN ZN D2001 1555 1555 2.34 LINK SG CYS D 28 ZN ZN D2001 1555 1555 2.35 LINK SG CYS D 37 ZN ZN D2000 1555 1555 2.14 LINK SG CYS D 40 ZN ZN D2000 1555 1555 2.25 LINK SG CYS D 45 ZN ZN D2001 1555 1555 2.23 LINK ND1 HIS D 52 ZN ZN D2001 1555 1555 2.01 LINK NE2 HIS D 56 ZN ZN D2000 1555 1555 2.04 LINK ND1 HIS D 62 ZN ZN D2000 1555 1555 1.98 LINK SG CYS D 75 ZN ZN D2002 1555 1555 2.29 LINK SG CYS D 78 ZN ZN D2002 1555 1555 2.16 SITE 1 AC1 4 CYS A 37 CYS A 40 HIS A 56 HIS A 62 SITE 1 AC2 4 CYS A 25 CYS A 28 CYS A 45 HIS A 52 SITE 1 AC3 4 CYS A 5 HIS A 7 CYS A 75 CYS A 78 SITE 1 AC4 4 CYS B 37 CYS B 40 HIS B 56 HIS B 62 SITE 1 AC5 4 CYS B 25 CYS B 28 CYS B 45 HIS B 52 SITE 1 AC6 4 CYS B 5 HIS B 7 CYS B 75 CYS B 78 SITE 1 AC7 4 CYS C 37 CYS C 40 HIS C 56 HIS C 62 SITE 1 AC8 4 CYS C 25 CYS C 28 CYS C 45 HIS C 52 SITE 1 AC9 4 CYS C 5 HIS C 7 CYS C 75 CYS C 78 SITE 1 BC1 4 CYS D 37 CYS D 40 HIS D 56 HIS D 62 SITE 1 BC2 4 CYS D 25 CYS D 28 CYS D 45 HIS D 52 SITE 1 BC3 4 CYS D 5 HIS D 7 CYS D 75 CYS D 78 CRYST1 133.748 133.748 118.768 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007477 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008420 0.00000