PDB Short entry for 3PJ8 HEADER TRANSFERASE/TRANSFERASE INHIBITOR 09-NOV-10 3PJ8 TITLE STRUCTURE OF CDK2 IN COMPLEX WITH A PYRAZOLO[4,3-D]PYRIMIDINE TITLE 2 BIOISOSTERE OF ROSCOVITINE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION PROTEIN KINASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: P33 PROTEIN KINASE; COMPND 5 EC: 2.7.11.22; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHORYLATION, CELL DIVISION, MITOSIS, CYCLIN, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.W.MCNAE,R.JORDA,L.HAVLICEK,M.STRNAD,J.VOLLER,M.D.WALKINSHAW, AUTHOR 2 V.KRYSTOF REVDAT 3 21-FEB-24 3PJ8 1 REMARK SEQADV REVDAT 2 11-MAY-11 3PJ8 1 JRNL REVDAT 1 06-APR-11 3PJ8 0 JRNL AUTH R.JORDA,I.W.MCNAE,M.D.WALKINSHAW,J.VOLLER,J.NAVRATILOVA, JRNL AUTH 2 M.KUZMA,M.MISTRIK,J.BARTEK,M.STRNAD JRNL TITL PYRAZOLO[4,3-D]PYRIMIDINE BIOISOSTERE OF ROSCOVITINE: JRNL TITL 2 EVALUATION OF A NOVEL SELECTIVE INHIBITOR OF JRNL TITL 3 CYCLIN-DEPENDENT KINASES WITH ANTIPROLIFERATIVE ACTIVITY. JRNL REF J.MED.CHEM. V. 54 2980 2011 JRNL REFN ISSN 0022-2623 JRNL PMID 21417417 JRNL DOI 10.1021/JM200064P REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.2_432) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 3 NUMBER OF REFLECTIONS : 18755 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.1000 - 3.7435 0.95 2858 131 0.1746 0.2400 REMARK 3 2 3.7435 - 2.9739 0.88 2542 127 0.2085 0.2504 REMARK 3 3 2.9739 - 2.5988 0.87 2445 156 0.2071 0.2848 REMARK 3 4 2.5988 - 2.3615 1.00 2824 150 0.2171 0.2729 REMARK 3 5 2.3615 - 2.1925 0.72 2027 119 0.2533 0.3372 REMARK 3 6 2.1925 - 2.0633 0.84 2328 121 0.2099 0.3385 REMARK 3 7 2.0633 - 1.9600 1.00 2777 150 0.2363 0.3395 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 36.67 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.99450 REMARK 3 B22 (A**2) : -2.73670 REMARK 3 B33 (A**2) : 3.73120 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2397 REMARK 3 ANGLE : 1.035 3248 REMARK 3 CHIRALITY : 0.063 363 REMARK 3 PLANARITY : 0.004 407 REMARK 3 DIHEDRAL : 15.840 892 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 0:5) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9240 23.6142 -15.0450 REMARK 3 T TENSOR REMARK 3 T11: 0.2614 T22: 0.2468 REMARK 3 T33: 0.4474 T12: -0.1441 REMARK 3 T13: -0.0306 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 5.7414 L22: 1.7435 REMARK 3 L33: 1.1094 L12: 2.2945 REMARK 3 L13: -0.1590 L23: 0.8143 REMARK 3 S TENSOR REMARK 3 S11: -0.3815 S12: -0.3082 S13: 0.5880 REMARK 3 S21: -1.2403 S22: 0.2257 S23: 0.3319 REMARK 3 S31: -0.6054 S32: 0.4509 S33: 0.0857 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 6:13) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7268 15.3809 -6.0744 REMARK 3 T TENSOR REMARK 3 T11: 0.4378 T22: 0.3950 REMARK 3 T33: 0.2425 T12: -0.0963 REMARK 3 T13: -0.0666 T23: 0.0801 REMARK 3 L TENSOR REMARK 3 L11: 6.0098 L22: 4.1836 REMARK 3 L33: 0.1055 L12: -1.3169 REMARK 3 L13: 0.5391 L23: 0.0784 REMARK 3 S TENSOR REMARK 3 S11: 0.3861 S12: -1.2008 S13: 0.1347 REMARK 3 S21: 1.1329 S22: -0.4337 S23: -0.4829 REMARK 3 S31: 0.4613 S32: -0.1411 S33: -0.0909 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 14:28) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2547 17.5815 -13.9079 REMARK 3 T TENSOR REMARK 3 T11: 0.2076 T22: 0.2171 REMARK 3 T33: 0.2508 T12: -0.0170 REMARK 3 T13: -0.0079 T23: 0.0563 REMARK 3 L TENSOR REMARK 3 L11: 1.3198 L22: 3.2125 REMARK 3 L33: 2.4298 L12: -0.3106 REMARK 3 L13: -0.1141 L23: -2.7065 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: 0.1305 S13: 0.1662 REMARK 3 S21: -0.3508 S22: -0.3573 S23: -0.7008 REMARK 3 S31: 0.4103 S32: 0.1641 S33: 0.2592 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 29:36) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5703 12.6789 -11.4350 REMARK 3 T TENSOR REMARK 3 T11: 0.1670 T22: 0.0978 REMARK 3 T33: 0.1058 T12: -0.0214 REMARK 3 T13: 0.0406 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 2.5494 L22: 6.8152 REMARK 3 L33: 0.5547 L12: -2.6725 REMARK 3 L13: -0.3136 L23: -1.0524 REMARK 3 S TENSOR REMARK 3 S11: -0.1931 S12: -0.2122 S13: -0.0164 REMARK 3 S21: 0.9336 S22: 0.2075 S23: 0.6269 REMARK 3 S31: -0.2163 S32: -0.0847 S33: -0.0314 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 40:47) REMARK 3 ORIGIN FOR THE GROUP (A): 36.6882 5.6021 -12.0881 REMARK 3 T TENSOR REMARK 3 T11: 0.5010 T22: 0.3023 REMARK 3 T33: 0.4973 T12: 0.1894 REMARK 3 T13: -0.0753 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 2.8413 L22: 0.3978 REMARK 3 L33: 1.8905 L12: 0.3770 REMARK 3 L13: 1.7109 L23: -0.3210 REMARK 3 S TENSOR REMARK 3 S11: 0.2302 S12: -0.2442 S13: -1.5705 REMARK 3 S21: -0.0937 S22: 0.5950 S23: 0.0450 REMARK 3 S31: 0.5764 S32: 0.1071 S33: -0.6856 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 48:60) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5671 3.5851 -23.9386 REMARK 3 T TENSOR REMARK 3 T11: 0.1511 T22: 0.1783 REMARK 3 T33: 0.2409 T12: -0.0137 REMARK 3 T13: 0.0204 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 3.1188 L22: 6.2241 REMARK 3 L33: 3.0355 L12: -4.1709 REMARK 3 L13: -1.3060 L23: 0.4900 REMARK 3 S TENSOR REMARK 3 S11: 0.2378 S12: -0.3640 S13: 1.2008 REMARK 3 S21: -0.1758 S22: 0.0276 S23: -1.2286 REMARK 3 S31: 0.1245 S32: 0.4754 S33: -0.2264 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 61:85) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3225 11.5935 -17.5143 REMARK 3 T TENSOR REMARK 3 T11: 0.1474 T22: 0.1717 REMARK 3 T33: 0.1932 T12: -0.0439 REMARK 3 T13: -0.0105 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 0.7017 L22: 3.1776 REMARK 3 L33: 1.0902 L12: -0.0444 REMARK 3 L13: -0.8602 L23: 0.5773 REMARK 3 S TENSOR REMARK 3 S11: -0.0784 S12: -0.2731 S13: 0.0499 REMARK 3 S21: 0.0491 S22: 0.1179 S23: -0.2193 REMARK 3 S31: -0.0071 S32: 0.1681 S33: -0.0592 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 86:103) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4292 2.3321 -8.7967 REMARK 3 T TENSOR REMARK 3 T11: 0.1905 T22: 0.1778 REMARK 3 T33: 0.3021 T12: 0.0073 REMARK 3 T13: 0.0839 T23: 0.0609 REMARK 3 L TENSOR REMARK 3 L11: 1.3618 L22: 0.5176 REMARK 3 L33: 1.1307 L12: 0.1602 REMARK 3 L13: -0.4820 L23: -0.5628 REMARK 3 S TENSOR REMARK 3 S11: 0.3057 S12: -0.1766 S13: 0.2433 REMARK 3 S21: 0.3768 S22: 0.0341 S23: 0.2741 REMARK 3 S31: -0.0917 S32: -0.1947 S33: -0.2825 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 104:121) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4602 -3.9969 -22.6585 REMARK 3 T TENSOR REMARK 3 T11: 0.1639 T22: 0.2012 REMARK 3 T33: 0.1358 T12: -0.0322 REMARK 3 T13: -0.0332 T23: 0.0675 REMARK 3 L TENSOR REMARK 3 L11: 1.8723 L22: 0.6010 REMARK 3 L33: 0.2814 L12: 0.7891 REMARK 3 L13: -0.5329 L23: -0.3295 REMARK 3 S TENSOR REMARK 3 S11: -0.3115 S12: 0.1977 S13: 0.0486 REMARK 3 S21: -0.2481 S22: 0.2524 S23: 0.1469 REMARK 3 S31: 0.2716 S32: -0.1241 S33: 0.0163 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 122:128) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6585 -5.6623 -17.0706 REMARK 3 T TENSOR REMARK 3 T11: 0.1360 T22: 0.1770 REMARK 3 T33: 0.1824 T12: -0.0110 REMARK 3 T13: 0.0512 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 0.4556 L22: 1.8337 REMARK 3 L33: 8.9325 L12: -0.4190 REMARK 3 L13: -1.7401 L23: 1.0169 REMARK 3 S TENSOR REMARK 3 S11: 0.0416 S12: 0.4479 S13: 0.0004 REMARK 3 S21: -0.0888 S22: -0.2311 S23: -0.5856 REMARK 3 S31: 0.0571 S32: -0.4963 S33: 0.1705 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 129:154) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2947 2.6926 -15.0550 REMARK 3 T TENSOR REMARK 3 T11: 0.1370 T22: 0.1106 REMARK 3 T33: 0.1447 T12: -0.0400 REMARK 3 T13: 0.0131 T23: 0.0545 REMARK 3 L TENSOR REMARK 3 L11: 1.6608 L22: 2.6434 REMARK 3 L33: 0.0727 L12: -0.1710 REMARK 3 L13: 0.3971 L23: 0.2904 REMARK 3 S TENSOR REMARK 3 S11: -0.0944 S12: -0.0874 S13: 0.1024 REMARK 3 S21: -0.0358 S22: 0.1417 S23: -0.1634 REMARK 3 S31: -0.0640 S32: -0.0615 S33: -0.0426 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 163:176) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4817 -10.5455 -4.8897 REMARK 3 T TENSOR REMARK 3 T11: 0.1289 T22: 0.1451 REMARK 3 T33: 0.1292 T12: -0.0078 REMARK 3 T13: 0.0020 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 0.7972 L22: 2.4308 REMARK 3 L33: 2.4938 L12: -0.2522 REMARK 3 L13: -0.4627 L23: 0.8709 REMARK 3 S TENSOR REMARK 3 S11: 0.1756 S12: -0.1340 S13: -0.0334 REMARK 3 S21: -0.1204 S22: 0.1116 S23: -0.2503 REMARK 3 S31: -0.1384 S32: 0.2048 S33: -0.2291 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 177:181) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3362 -14.9443 -13.1927 REMARK 3 T TENSOR REMARK 3 T11: 0.3460 T22: 0.3207 REMARK 3 T33: 0.0736 T12: 0.0368 REMARK 3 T13: 0.0382 T23: -0.0692 REMARK 3 L TENSOR REMARK 3 L11: 7.8625 L22: 3.3726 REMARK 3 L33: 2.2497 L12: 1.9857 REMARK 3 L13: -3.5375 L23: -1.9984 REMARK 3 S TENSOR REMARK 3 S11: 0.4882 S12: 0.3562 S13: 0.4993 REMARK 3 S21: 0.7282 S22: 0.1955 S23: 0.2347 REMARK 3 S31: -0.5208 S32: 0.5383 S33: -0.4535 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 182:201) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8354 -8.6903 -10.4719 REMARK 3 T TENSOR REMARK 3 T11: 0.0450 T22: 0.1079 REMARK 3 T33: 0.0588 T12: -0.0186 REMARK 3 T13: 0.0096 T23: 0.0995 REMARK 3 L TENSOR REMARK 3 L11: 2.1706 L22: 1.8869 REMARK 3 L33: 3.5694 L12: -1.9266 REMARK 3 L13: -2.2873 L23: 1.5404 REMARK 3 S TENSOR REMARK 3 S11: 0.0275 S12: -0.4175 S13: 0.0244 REMARK 3 S21: 0.0878 S22: 0.3814 S23: -0.1444 REMARK 3 S31: 0.2850 S32: 0.2697 S33: -0.1725 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 202:216) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0796 -14.7152 0.5980 REMARK 3 T TENSOR REMARK 3 T11: 0.2031 T22: 0.1870 REMARK 3 T33: 0.1834 T12: 0.0121 REMARK 3 T13: -0.0113 T23: 0.0702 REMARK 3 L TENSOR REMARK 3 L11: 1.2916 L22: 3.6684 REMARK 3 L33: 2.9968 L12: -1.4433 REMARK 3 L13: 1.2992 L23: -0.4898 REMARK 3 S TENSOR REMARK 3 S11: 0.1663 S12: -0.4753 S13: 0.3121 REMARK 3 S21: 0.1905 S22: 0.1615 S23: 0.0337 REMARK 3 S31: 0.1785 S32: -0.6135 S33: -0.3384 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 217:232) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7934 -26.2407 -7.2293 REMARK 3 T TENSOR REMARK 3 T11: 0.4830 T22: 0.0952 REMARK 3 T33: 0.2387 T12: -0.0989 REMARK 3 T13: -0.0976 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 1.9589 L22: 1.4196 REMARK 3 L33: 4.2472 L12: 1.5070 REMARK 3 L13: 0.0151 L23: 0.7182 REMARK 3 S TENSOR REMARK 3 S11: 0.0482 S12: 0.0912 S13: -0.3398 REMARK 3 S21: 0.8261 S22: -0.0697 S23: -0.3466 REMARK 3 S31: 1.2568 S32: -0.3663 S33: 0.0194 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN A AND RESID 233:248) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6881 -24.6775 -1.8983 REMARK 3 T TENSOR REMARK 3 T11: 0.4268 T22: 0.1696 REMARK 3 T33: 0.1779 T12: -0.1528 REMARK 3 T13: -0.0545 T23: 0.0493 REMARK 3 L TENSOR REMARK 3 L11: 3.3000 L22: 2.0034 REMARK 3 L33: 2.0269 L12: 0.6642 REMARK 3 L13: -0.5076 L23: 1.8007 REMARK 3 S TENSOR REMARK 3 S11: -0.0550 S12: 0.2424 S13: -0.0551 REMARK 3 S21: 0.6261 S22: -0.0379 S23: -0.1060 REMARK 3 S31: 0.8940 S32: -0.2172 S33: 0.0924 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN A AND RESID 249:277) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3462 -17.1938 -14.5642 REMARK 3 T TENSOR REMARK 3 T11: 0.1458 T22: 0.1631 REMARK 3 T33: 0.1528 T12: -0.0471 REMARK 3 T13: -0.0043 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 1.4322 L22: 0.6539 REMARK 3 L33: 0.4525 L12: 0.8564 REMARK 3 L13: 0.6722 L23: 0.5791 REMARK 3 S TENSOR REMARK 3 S11: 0.3869 S12: -0.2639 S13: -0.2243 REMARK 3 S21: 0.0456 S22: -0.2893 S23: 0.1497 REMARK 3 S31: 0.2040 S32: -0.1011 S33: -0.0734 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN A AND RESID 278:287) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0532 -11.8186 -25.1289 REMARK 3 T TENSOR REMARK 3 T11: 0.1400 T22: 0.1696 REMARK 3 T33: 0.1369 T12: -0.0347 REMARK 3 T13: -0.0541 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 8.2844 L22: 2.3309 REMARK 3 L33: 4.1573 L12: -0.8761 REMARK 3 L13: -5.2635 L23: 1.3790 REMARK 3 S TENSOR REMARK 3 S11: 0.1296 S12: 0.9600 S13: -0.4475 REMARK 3 S21: -0.3464 S22: -0.1800 S23: -0.1792 REMARK 3 S31: 0.1181 S32: -0.3561 S33: 0.1132 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN A AND RESID 288:298) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8905 6.3613 -17.8320 REMARK 3 T TENSOR REMARK 3 T11: 0.1401 T22: 0.2804 REMARK 3 T33: 0.4544 T12: -0.0369 REMARK 3 T13: 0.0618 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.2329 L22: 6.6871 REMARK 3 L33: 0.4073 L12: -1.1828 REMARK 3 L13: -0.2214 L23: 1.5837 REMARK 3 S TENSOR REMARK 3 S11: 0.2995 S12: -0.1454 S13: 0.3088 REMARK 3 S21: -0.0587 S22: -0.7683 S23: 1.2664 REMARK 3 S31: -0.1616 S32: -0.4115 S33: 0.2214 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PJ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062438. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18832 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 21.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.24200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, NA-HEPES, PH 8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.17500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.24000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.94500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.24000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.17500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.94500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 37 REMARK 465 ASP A 38 REMARK 465 THR A 39 REMARK 465 PRO A 155 REMARK 465 VAL A 156 REMARK 465 ARG A 157 REMARK 465 THR A 158 REMARK 465 TYR A 159 REMARK 465 THR A 160 REMARK 465 HIS A 161 REMARK 465 GLU A 162 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 40 CB CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 131 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 126 -24.70 88.08 REMARK 500 PRO A 254 49.69 -100.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 404 A 299 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2A0C RELATED DB: PDB REMARK 900 HUMAN CDK2 IN COMPLEX WITH OLOMOUCINE II, A NOVEL 2,6,9- REMARK 900 TRISUBSTITUTED PURINE CYCLIN-DEPENDENT KINASE INHIBITOR REMARK 900 RELATED ID: 1G5S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN CYCLIN DEPENDENT KINASE 2 (CDK2) IN REMARK 900 COMPLEX WITH THE INHIBITOR H717 REMARK 900 RELATED ID: 1W0X RELATED DB: PDB REMARK 900 CRYSTALS STRUCTURE OF HUMAN CDK2 IN COMPLEX WITH THE INHIBITOR REMARK 900 OLOMOUCINE. REMARK 900 RELATED ID: 3DDP RELATED DB: PDB REMARK 900 STRUCTURE OF PHOSPHORYLATED THR160 CDK2/CYCLIN A IN COMPLEX WITH REMARK 900 THE INHIBITOR CR8 REMARK 900 RELATED ID: 3DDQ RELATED DB: PDB REMARK 900 STRUCTURE OF PHOSPHORYLATED THR160 CDK2/CYCLIN A IN COMPLEX WITH REMARK 900 THE INHIBITOR ROSCOVITINE REMARK 900 RELATED ID: 2A4L RELATED DB: PDB REMARK 900 HUMAN CYCLIN-DEPENDENT KINASE 2 IN COMPLEX WITH ROSCOVITINE DBREF 3PJ8 A 1 298 UNP P24941 CDK2_HUMAN 1 298 SEQADV 3PJ8 GLY A 0 UNP P24941 EXPRESSION TAG SEQRES 1 A 299 GLY MET GLU ASN PHE GLN LYS VAL GLU LYS ILE GLY GLU SEQRES 2 A 299 GLY THR TYR GLY VAL VAL TYR LYS ALA ARG ASN LYS LEU SEQRES 3 A 299 THR GLY GLU VAL VAL ALA LEU LYS LYS ILE ARG LEU ASP SEQRES 4 A 299 THR GLU THR GLU GLY VAL PRO SER THR ALA ILE ARG GLU SEQRES 5 A 299 ILE SER LEU LEU LYS GLU LEU ASN HIS PRO ASN ILE VAL SEQRES 6 A 299 LYS LEU LEU ASP VAL ILE HIS THR GLU ASN LYS LEU TYR SEQRES 7 A 299 LEU VAL PHE GLU PHE LEU HIS GLN ASP LEU LYS LYS PHE SEQRES 8 A 299 MET ASP ALA SER ALA LEU THR GLY ILE PRO LEU PRO LEU SEQRES 9 A 299 ILE LYS SER TYR LEU PHE GLN LEU LEU GLN GLY LEU ALA SEQRES 10 A 299 PHE CYS HIS SER HIS ARG VAL LEU HIS ARG ASP LEU LYS SEQRES 11 A 299 PRO GLN ASN LEU LEU ILE ASN THR GLU GLY ALA ILE LYS SEQRES 12 A 299 LEU ALA ASP PHE GLY LEU ALA ARG ALA PHE GLY VAL PRO SEQRES 13 A 299 VAL ARG THR TYR THR HIS GLU VAL VAL THR LEU TRP TYR SEQRES 14 A 299 ARG ALA PRO GLU ILE LEU LEU GLY CYS LYS TYR TYR SER SEQRES 15 A 299 THR ALA VAL ASP ILE TRP SER LEU GLY CYS ILE PHE ALA SEQRES 16 A 299 GLU MET VAL THR ARG ARG ALA LEU PHE PRO GLY ASP SER SEQRES 17 A 299 GLU ILE ASP GLN LEU PHE ARG ILE PHE ARG THR LEU GLY SEQRES 18 A 299 THR PRO ASP GLU VAL VAL TRP PRO GLY VAL THR SER MET SEQRES 19 A 299 PRO ASP TYR LYS PRO SER PHE PRO LYS TRP ALA ARG GLN SEQRES 20 A 299 ASP PHE SER LYS VAL VAL PRO PRO LEU ASP GLU ASP GLY SEQRES 21 A 299 ARG SER LEU LEU SER GLN MET LEU HIS TYR ASP PRO ASN SEQRES 22 A 299 LYS ARG ILE SER ALA LYS ALA ALA LEU ALA HIS PRO PHE SEQRES 23 A 299 PHE GLN ASP VAL THR LYS PRO VAL PRO HIS LEU ARG LEU HET 404 A 299 26 HETNAM 404 (2R)-2-{[7-(BENZYLAMINO)-3-(PROPAN-2-YL)-1H-PYRAZOLO[4, HETNAM 2 404 3-D]PYRIMIDIN-5-YL]AMINO}BUTAN-1-OL FORMUL 2 404 C19 H26 N6 O FORMUL 3 HOH *146(H2 O) HELIX 1 1 GLY A 0 GLU A 2 5 3 HELIX 2 2 PRO A 45 GLU A 57 1 13 HELIX 3 3 LEU A 87 SER A 94 1 8 HELIX 4 4 PRO A 100 HIS A 121 1 22 HELIX 5 5 LYS A 129 GLN A 131 5 3 HELIX 6 6 GLY A 147 PHE A 152 1 6 HELIX 7 7 ALA A 170 LEU A 175 1 6 HELIX 8 8 THR A 182 ARG A 199 1 18 HELIX 9 9 SER A 207 GLY A 220 1 14 HELIX 10 10 GLY A 229 MET A 233 5 5 HELIX 11 11 ASP A 247 VAL A 252 1 6 HELIX 12 12 ASP A 256 LEU A 267 1 12 HELIX 13 13 SER A 276 LEU A 281 1 6 HELIX 14 14 ALA A 282 GLN A 287 5 6 SHEET 1 A 5 PHE A 4 GLU A 12 0 SHEET 2 A 5 GLY A 16 ASN A 23 -1 O LYS A 20 N GLU A 8 SHEET 3 A 5 VAL A 29 ILE A 35 -1 O LEU A 32 N TYR A 19 SHEET 4 A 5 LYS A 75 GLU A 81 -1 O LEU A 78 N LYS A 33 SHEET 5 A 5 LEU A 66 THR A 72 -1 N ILE A 70 O TYR A 77 SHEET 1 B 3 GLN A 85 ASP A 86 0 SHEET 2 B 3 LEU A 133 ILE A 135 -1 O ILE A 135 N GLN A 85 SHEET 3 B 3 ILE A 141 LEU A 143 -1 O LYS A 142 N LEU A 134 CISPEP 1 PRO A 253 PRO A 254 0 1.33 SITE 1 AC1 10 ILE A 10 ALA A 31 PHE A 80 GLU A 81 SITE 2 AC1 10 LEU A 83 HIS A 84 LEU A 134 ALA A 144 SITE 3 AC1 10 ASP A 145 HOH A 370 CRYST1 54.350 71.890 72.480 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018399 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013910 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013797 0.00000