PDB Short entry for 3PJZ HEADER TRANSPORT PROTEIN 10-NOV-10 3PJZ TITLE CRYSTAL STRUCTURE OF THE POTASSIUM TRANSPORTER TRKH FROM VIBRIO TITLE 2 PARAHAEMOLYTICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: POTASSIUM UPTAKE PROTEIN TRKH; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS; SOURCE 3 ORGANISM_TAXID: 670; SOURCE 4 GENE: VP0032; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NEW YORK KEYWDS 2 CONSORTIUM ON MEMBRANE PROTEIN STRUCTURE, NYCOMPS, POTASSIUM KEYWDS 3 TRANSPORT, MEMBRANE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.CAO,X.JIN,H.HUANG,E.J.LEVIN,M.ZHOU,NEW YORK CONSORTIUM ON MEMBRANE AUTHOR 2 PROTEIN STRUCTURE (NYCOMPS) REVDAT 5 08-NOV-17 3PJZ 1 REMARK REVDAT 4 13-APR-11 3PJZ 1 MTRIX1 MTRIX2 MTRIX3 REVDAT 3 16-MAR-11 3PJZ 1 JRNL REVDAT 2 09-FEB-11 3PJZ 1 JRNL REVDAT 1 19-JAN-11 3PJZ 0 JRNL AUTH Y.CAO,X.JIN,H.HUANG,M.G.DEREBE,E.J.LEVIN,V.KABALEESWARAN, JRNL AUTH 2 Y.PAN,M.PUNTA,J.LOVE,J.WENG,M.QUICK,S.YE,B.KLOSS,R.BRUNI, JRNL AUTH 3 E.MARTINEZ-HACKERT,W.A.HENDRICKSON,B.ROST,J.A.JAVITCH, JRNL AUTH 4 K.R.RAJASHANKAR,Y.JIANG,M.ZHOU JRNL TITL CRYSTAL STRUCTURE OF A POTASSIUM ION TRANSPORTER, TRKH. JRNL REF NATURE V. 471 336 2011 JRNL REFN ISSN 0028-0836 JRNL PMID 21317882 JRNL DOI 10.1038/NATURE09731 REMARK 2 REMARK 2 RESOLUTION. 3.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.7 REMARK 3 NUMBER OF REFLECTIONS : 19088 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.252 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.220 REMARK 3 FREE R VALUE TEST SET COUNT : 996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.9952 - 6.5435 0.99 3140 154 0.2143 0.2340 REMARK 3 2 6.5435 - 5.2676 0.97 2953 167 0.2901 0.3451 REMARK 3 3 5.2676 - 4.6240 0.92 2754 164 0.2119 0.2622 REMARK 3 4 4.6240 - 4.2115 0.90 2704 143 0.2344 0.3070 REMARK 3 5 4.2115 - 3.9154 0.89 2643 146 0.2714 0.3222 REMARK 3 6 3.9154 - 3.6882 0.86 2560 144 0.3029 0.3618 REMARK 3 7 3.6882 - 3.5060 0.46 1338 78 0.3030 0.4019 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.23 REMARK 3 B_SOL : 13.80 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.540 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37610 REMARK 3 B22 (A**2) : 0.70090 REMARK 3 B33 (A**2) : -1.07700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 7466 REMARK 3 ANGLE : 1.208 10150 REMARK 3 CHIRALITY : 0.079 1194 REMARK 3 PLANARITY : 0.005 1238 REMARK 3 DIHEDRAL : 16.794 2502 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 1:157 OR RESSEQ REMARK 3 174:484 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 1:157 OR RESSEQ REMARK 3 174:484 ) REMARK 3 ATOM PAIRS NUMBER : 3621 REMARK 3 RMSD : 0.037 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PJZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062464. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-08; 18-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; APS REMARK 200 BEAMLINE : X29A; 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791; 0.97949 REMARK 200 MONOCHROMATOR : SI(111); SI 111 CHANNEL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20487 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.24900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: DM, PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG400, 200 MM CALCIUM ACETATE, REMARK 280 100 MM SODIUM ACETATE, PH 5.3, MICROBATCH, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.74450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.82650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.70300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 97.82650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.74450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.70300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 158 REMARK 465 GLN A 159 REMARK 465 LEU A 160 REMARK 465 TYR A 161 REMARK 465 ARG A 162 REMARK 465 ALA A 163 REMARK 465 GLU A 164 REMARK 465 ILE A 165 REMARK 465 PRO A 166 REMARK 465 GLY A 167 REMARK 465 PRO A 168 REMARK 465 VAL A 169 REMARK 465 LYS A 170 REMARK 465 ASP A 171 REMARK 465 THR A 172 REMARK 465 LYS A 173 REMARK 465 SER A 485 REMARK 465 ALA A 486 REMARK 465 ALA A 487 REMARK 465 ALA A 488 REMARK 465 GLU A 489 REMARK 465 ASN A 490 REMARK 465 LEU A 491 REMARK 465 TYR A 492 REMARK 465 PHE A 493 REMARK 465 GLN A 494 REMARK 465 MET B 158 REMARK 465 GLN B 159 REMARK 465 LEU B 160 REMARK 465 TYR B 161 REMARK 465 ARG B 162 REMARK 465 ALA B 163 REMARK 465 GLU B 164 REMARK 465 ILE B 165 REMARK 465 PRO B 166 REMARK 465 GLY B 167 REMARK 465 PRO B 168 REMARK 465 VAL B 169 REMARK 465 LYS B 170 REMARK 465 ASP B 171 REMARK 465 THR B 172 REMARK 465 LYS B 173 REMARK 465 SER B 485 REMARK 465 ALA B 486 REMARK 465 ALA B 487 REMARK 465 ALA B 488 REMARK 465 GLU B 489 REMARK 465 ASN B 490 REMARK 465 LEU B 491 REMARK 465 TYR B 492 REMARK 465 PHE B 493 REMARK 465 GLN B 494 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 392 C - N - CA ANGL. DEV. = 11.9 DEGREES REMARK 500 PRO B 392 C - N - CA ANGL. DEV. = 12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 32 -131.13 24.45 REMARK 500 ASP A 33 -132.12 41.44 REMARK 500 ALA A 35 53.63 -101.21 REMARK 500 MET A 52 -4.98 -159.79 REMARK 500 PRO A 56 24.68 -64.90 REMARK 500 ASN A 57 -102.28 -136.52 REMARK 500 ARG A 58 74.71 56.42 REMARK 500 ARG A 59 81.30 -154.10 REMARK 500 HIS A 62 141.01 45.30 REMARK 500 GLU A 63 -94.21 41.08 REMARK 500 LEU A 64 29.55 85.36 REMARK 500 LYS A 65 -166.75 74.08 REMARK 500 ARG A 67 -7.82 -54.58 REMARK 500 ALA A 91 63.21 -58.43 REMARK 500 ASP A 92 49.82 -74.11 REMARK 500 ASN A 93 -60.33 -101.04 REMARK 500 PRO A 94 49.06 -82.90 REMARK 500 SER A 97 -178.99 -59.05 REMARK 500 THR A 111 45.70 35.23 REMARK 500 ALA A 146 39.04 -94.44 REMARK 500 VAL A 147 -34.59 -148.04 REMARK 500 PRO A 151 -2.49 -55.39 REMARK 500 VAL A 152 -89.90 -136.20 REMARK 500 THR A 175 -44.77 -175.71 REMARK 500 GLU A 180 11.11 -66.38 REMARK 500 HIS A 226 145.51 -39.26 REMARK 500 ALA A 228 48.92 -93.38 REMARK 500 SER A 229 -129.92 25.42 REMARK 500 MET A 230 3.13 -69.91 REMARK 500 TYR A 232 -119.49 32.87 REMARK 500 ASP A 234 21.18 -63.41 REMARK 500 ASN A 252 99.39 56.59 REMARK 500 SER A 262 -59.51 -122.80 REMARK 500 PRO A 267 -105.99 -26.73 REMARK 500 PRO A 303 -2.12 -48.33 REMARK 500 THR A 314 4.80 -54.03 REMARK 500 PHE A 328 49.35 77.86 REMARK 500 ALA A 329 -99.83 -39.78 REMARK 500 ILE A 345 -108.32 -112.14 REMARK 500 CYS A 348 165.22 -47.46 REMARK 500 SER A 351 -153.81 -121.20 REMARK 500 MET A 356 93.62 -54.69 REMARK 500 LYS A 357 164.15 -41.77 REMARK 500 ARG A 370 -34.66 -34.72 REMARK 500 ARG A 374 6.64 -68.18 REMARK 500 HIS A 377 75.78 -110.72 REMARK 500 PRO A 378 0.16 -68.94 REMARK 500 ARG A 379 -61.98 -95.82 REMARK 500 SER A 389 100.69 72.19 REMARK 500 ALA A 390 -169.28 -67.29 REMARK 500 REMARK 500 THIS ENTRY HAS 133 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 501 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 321 O REMARK 620 2 THR B 112 O 120.6 REMARK 620 3 THR B 320 O 88.8 149.9 REMARK 620 4 LEU B 438 O 85.8 68.4 111.2 REMARK 620 5 GLY B 221 O 71.0 66.9 136.0 106.0 REMARK 620 6 ASN B 437 O 145.8 86.8 63.4 86.4 142.9 REMARK 620 7 ILE B 220 O 86.7 117.1 67.1 172.4 72.9 99.0 REMARK 620 8 THR B 111 O 134.2 68.8 96.2 132.7 74.2 72.0 54.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 501 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 321 O REMARK 620 2 THR A 320 O 89.9 REMARK 620 3 GLY A 221 O 71.7 148.3 REMARK 620 4 THR A 112 O 109.2 144.3 67.4 REMARK 620 5 ILE A 220 O 97.0 76.3 80.6 128.3 REMARK 620 6 ASN A 437 O 136.3 64.9 144.9 81.1 109.6 REMARK 620 7 LEU A 438 O 73.2 101.1 98.0 59.0 170.0 77.3 REMARK 620 8 THR A 111 O 149.9 105.6 82.2 72.8 63.2 73.7 126.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.1008 RELATED DB: TARGETDB DBREF 3PJZ A 1 485 UNP Q87TN7 Q87TN7_VIBPA 1 485 DBREF 3PJZ B 1 485 UNP Q87TN7 Q87TN7_VIBPA 1 485 SEQADV 3PJZ ALA A 486 UNP Q87TN7 EXPRESSION TAG SEQADV 3PJZ ALA A 487 UNP Q87TN7 EXPRESSION TAG SEQADV 3PJZ ALA A 488 UNP Q87TN7 EXPRESSION TAG SEQADV 3PJZ GLU A 489 UNP Q87TN7 EXPRESSION TAG SEQADV 3PJZ ASN A 490 UNP Q87TN7 EXPRESSION TAG SEQADV 3PJZ LEU A 491 UNP Q87TN7 EXPRESSION TAG SEQADV 3PJZ TYR A 492 UNP Q87TN7 EXPRESSION TAG SEQADV 3PJZ PHE A 493 UNP Q87TN7 EXPRESSION TAG SEQADV 3PJZ GLN A 494 UNP Q87TN7 EXPRESSION TAG SEQADV 3PJZ ALA B 486 UNP Q87TN7 EXPRESSION TAG SEQADV 3PJZ ALA B 487 UNP Q87TN7 EXPRESSION TAG SEQADV 3PJZ ALA B 488 UNP Q87TN7 EXPRESSION TAG SEQADV 3PJZ GLU B 489 UNP Q87TN7 EXPRESSION TAG SEQADV 3PJZ ASN B 490 UNP Q87TN7 EXPRESSION TAG SEQADV 3PJZ LEU B 491 UNP Q87TN7 EXPRESSION TAG SEQADV 3PJZ TYR B 492 UNP Q87TN7 EXPRESSION TAG SEQADV 3PJZ PHE B 493 UNP Q87TN7 EXPRESSION TAG SEQADV 3PJZ GLN B 494 UNP Q87TN7 EXPRESSION TAG SEQRES 1 A 494 MET GLN PHE ARG SER ILE ILE ARG ILE VAL GLY LEU LEU SEQRES 2 A 494 LEU ALA LEU PHE SER VAL THR MET LEU ALA PRO ALA LEU SEQRES 3 A 494 VAL ALA LEU LEU TYR ARG ASP GLY ALA GLY VAL PRO PHE SEQRES 4 A 494 VAL THR THR PHE PHE VAL LEU LEU PHE CYS GLY ALA MET SEQRES 5 A 494 CYS TRP PHE PRO ASN ARG ARG HIS LYS HIS GLU LEU LYS SEQRES 6 A 494 SER ARG ASP GLY PHE LEU ILE VAL VAL LEU PHE TRP THR SEQRES 7 A 494 VAL LEU GLY SER ALA GLY SER LEU PRO PHE LEU ILE ALA SEQRES 8 A 494 ASP ASN PRO ASN ILE SER VAL THR ASP ALA PHE PHE GLU SEQRES 9 A 494 SER PHE SER ALA LEU THR THR THR GLY ALA THR VAL ILE SEQRES 10 A 494 VAL GLY LEU ASP GLU LEU PRO LYS ALA ILE LEU PHE TYR SEQRES 11 A 494 ARG GLN PHE LEU GLN TRP PHE GLY GLY MET GLY ILE ILE SEQRES 12 A 494 VAL LEU ALA VAL ALA ILE LEU PRO VAL LEU GLY ILE GLY SEQRES 13 A 494 GLY MET GLN LEU TYR ARG ALA GLU ILE PRO GLY PRO VAL SEQRES 14 A 494 LYS ASP THR LYS MET THR PRO ARG ILE ALA GLU THR ALA SEQRES 15 A 494 LYS ALA LEU TRP TYR ILE TYR LEU SER LEU THR ILE ALA SEQRES 16 A 494 CYS ALA VAL ALA PHE TRP LEU ALA GLY MET THR PRO PHE SEQRES 17 A 494 ASP ALA ILE SER HIS SER PHE SER THR ILE ALA ILE GLY SEQRES 18 A 494 GLY PHE SER THR HIS ASP ALA SER MET GLY TYR PHE ASP SEQRES 19 A 494 SER TYR ALA ILE ASN LEU ILE THR VAL VAL PHE LEU LEU SEQRES 20 A 494 ILE SER ALA CYS ASN PHE THR LEU HIS PHE ALA ALA PHE SEQRES 21 A 494 ALA SER GLY GLY VAL HIS PRO LYS TYR TYR TRP LYS ASP SEQRES 22 A 494 PRO GLU PHE ARG ALA PHE ILE PHE ILE GLN VAL LEU LEU SEQRES 23 A 494 PHE LEU VAL CYS PHE LEU LEU LEU LEU LYS HIS HIS SER SEQRES 24 A 494 TYR THR SER PRO TYR ASP ALA PHE ASP GLN ALA LEU PHE SEQRES 25 A 494 GLN THR VAL SER ILE SER THR THR ALA GLY PHE THR THR SEQRES 26 A 494 THR GLY PHE ALA ASP TRP PRO LEU PHE LEU PRO VAL LEU SEQRES 27 A 494 LEU LEU PHE SER SER PHE ILE GLY GLY CYS ALA GLY SER SEQRES 28 A 494 THR GLY GLY GLY MET LYS VAL ILE ARG ILE LEU LEU LEU SEQRES 29 A 494 THR LEU GLN GLY ALA ARG GLU LEU LYS ARG LEU VAL HIS SEQRES 30 A 494 PRO ARG ALA VAL TYR THR ILE LYS VAL GLY GLY SER ALA SEQRES 31 A 494 LEU PRO GLN ARG VAL VAL ASP ALA VAL TRP GLY PHE PHE SEQRES 32 A 494 SER ALA TYR ALA LEU VAL PHE VAL VAL CYS MET LEU GLY SEQRES 33 A 494 LEU ILE ALA THR GLY MET ASP GLU LEU SER ALA PHE SER SEQRES 34 A 494 ALA VAL ALA ALA THR LEU ASN ASN LEU GLY PRO GLY LEU SEQRES 35 A 494 GLY GLU VAL ALA LEU HIS PHE GLY ASP VAL ASN ASP LYS SEQRES 36 A 494 ALA LYS TRP VAL LEU ILE VAL SER MET LEU PHE GLY ARG SEQRES 37 A 494 LEU GLU ILE PHE THR LEU LEU ILE LEU LEU THR PRO THR SEQRES 38 A 494 PHE TRP ARG SER ALA ALA ALA GLU ASN LEU TYR PHE GLN SEQRES 1 B 494 MET GLN PHE ARG SER ILE ILE ARG ILE VAL GLY LEU LEU SEQRES 2 B 494 LEU ALA LEU PHE SER VAL THR MET LEU ALA PRO ALA LEU SEQRES 3 B 494 VAL ALA LEU LEU TYR ARG ASP GLY ALA GLY VAL PRO PHE SEQRES 4 B 494 VAL THR THR PHE PHE VAL LEU LEU PHE CYS GLY ALA MET SEQRES 5 B 494 CYS TRP PHE PRO ASN ARG ARG HIS LYS HIS GLU LEU LYS SEQRES 6 B 494 SER ARG ASP GLY PHE LEU ILE VAL VAL LEU PHE TRP THR SEQRES 7 B 494 VAL LEU GLY SER ALA GLY SER LEU PRO PHE LEU ILE ALA SEQRES 8 B 494 ASP ASN PRO ASN ILE SER VAL THR ASP ALA PHE PHE GLU SEQRES 9 B 494 SER PHE SER ALA LEU THR THR THR GLY ALA THR VAL ILE SEQRES 10 B 494 VAL GLY LEU ASP GLU LEU PRO LYS ALA ILE LEU PHE TYR SEQRES 11 B 494 ARG GLN PHE LEU GLN TRP PHE GLY GLY MET GLY ILE ILE SEQRES 12 B 494 VAL LEU ALA VAL ALA ILE LEU PRO VAL LEU GLY ILE GLY SEQRES 13 B 494 GLY MET GLN LEU TYR ARG ALA GLU ILE PRO GLY PRO VAL SEQRES 14 B 494 LYS ASP THR LYS MET THR PRO ARG ILE ALA GLU THR ALA SEQRES 15 B 494 LYS ALA LEU TRP TYR ILE TYR LEU SER LEU THR ILE ALA SEQRES 16 B 494 CYS ALA VAL ALA PHE TRP LEU ALA GLY MET THR PRO PHE SEQRES 17 B 494 ASP ALA ILE SER HIS SER PHE SER THR ILE ALA ILE GLY SEQRES 18 B 494 GLY PHE SER THR HIS ASP ALA SER MET GLY TYR PHE ASP SEQRES 19 B 494 SER TYR ALA ILE ASN LEU ILE THR VAL VAL PHE LEU LEU SEQRES 20 B 494 ILE SER ALA CYS ASN PHE THR LEU HIS PHE ALA ALA PHE SEQRES 21 B 494 ALA SER GLY GLY VAL HIS PRO LYS TYR TYR TRP LYS ASP SEQRES 22 B 494 PRO GLU PHE ARG ALA PHE ILE PHE ILE GLN VAL LEU LEU SEQRES 23 B 494 PHE LEU VAL CYS PHE LEU LEU LEU LEU LYS HIS HIS SER SEQRES 24 B 494 TYR THR SER PRO TYR ASP ALA PHE ASP GLN ALA LEU PHE SEQRES 25 B 494 GLN THR VAL SER ILE SER THR THR ALA GLY PHE THR THR SEQRES 26 B 494 THR GLY PHE ALA ASP TRP PRO LEU PHE LEU PRO VAL LEU SEQRES 27 B 494 LEU LEU PHE SER SER PHE ILE GLY GLY CYS ALA GLY SER SEQRES 28 B 494 THR GLY GLY GLY MET LYS VAL ILE ARG ILE LEU LEU LEU SEQRES 29 B 494 THR LEU GLN GLY ALA ARG GLU LEU LYS ARG LEU VAL HIS SEQRES 30 B 494 PRO ARG ALA VAL TYR THR ILE LYS VAL GLY GLY SER ALA SEQRES 31 B 494 LEU PRO GLN ARG VAL VAL ASP ALA VAL TRP GLY PHE PHE SEQRES 32 B 494 SER ALA TYR ALA LEU VAL PHE VAL VAL CYS MET LEU GLY SEQRES 33 B 494 LEU ILE ALA THR GLY MET ASP GLU LEU SER ALA PHE SER SEQRES 34 B 494 ALA VAL ALA ALA THR LEU ASN ASN LEU GLY PRO GLY LEU SEQRES 35 B 494 GLY GLU VAL ALA LEU HIS PHE GLY ASP VAL ASN ASP LYS SEQRES 36 B 494 ALA LYS TRP VAL LEU ILE VAL SER MET LEU PHE GLY ARG SEQRES 37 B 494 LEU GLU ILE PHE THR LEU LEU ILE LEU LEU THR PRO THR SEQRES 38 B 494 PHE TRP ARG SER ALA ALA ALA GLU ASN LEU TYR PHE GLN HET K A 501 1 HET K B 501 1 HETNAM K POTASSIUM ION FORMUL 3 K 2(K 1+) HELIX 1 1 GLN A 2 VAL A 19 1 18 HELIX 2 2 MET A 21 LEU A 26 1 6 HELIX 3 3 LEU A 26 TYR A 31 1 6 HELIX 4 4 GLY A 36 ALA A 51 1 16 HELIX 5 5 LYS A 65 ALA A 91 1 27 HELIX 6 6 SER A 97 THR A 110 1 14 HELIX 7 7 PRO A 124 VAL A 144 1 21 HELIX 8 8 ILE A 178 GLY A 204 1 27 HELIX 9 9 PRO A 207 SER A 212 1 6 HELIX 10 10 SER A 214 ALA A 219 1 6 HELIX 11 11 ALA A 228 TYR A 232 5 5 HELIX 12 12 ALA A 237 ALA A 250 1 14 HELIX 13 13 ASN A 252 PHE A 260 1 9 HELIX 14 14 HIS A 266 LYS A 272 1 7 HELIX 15 15 ASP A 273 HIS A 297 1 25 HELIX 16 16 SER A 302 ILE A 317 1 16 HELIX 17 17 LEU A 333 SER A 343 1 11 HELIX 18 18 LYS A 357 HIS A 377 1 21 HELIX 19 19 ARG A 394 TRP A 400 1 7 HELIX 20 20 GLY A 401 GLY A 421 1 21 HELIX 21 21 ASP A 423 LEU A 435 1 13 HELIX 22 22 ASN A 453 LEU A 469 1 17 HELIX 23 23 ILE A 471 ILE A 476 1 6 HELIX 24 24 GLN B 2 VAL B 19 1 18 HELIX 25 25 MET B 21 LEU B 26 1 6 HELIX 26 26 LEU B 26 TYR B 31 1 6 HELIX 27 27 GLY B 36 ALA B 51 1 16 HELIX 28 28 LYS B 65 GLY B 84 1 20 HELIX 29 29 SER B 85 ALA B 91 1 7 HELIX 30 30 SER B 97 THR B 110 1 14 HELIX 31 31 PRO B 124 VAL B 144 1 21 HELIX 32 32 ILE B 178 GLY B 204 1 27 HELIX 33 33 PRO B 207 SER B 212 1 6 HELIX 34 34 SER B 214 ALA B 219 1 6 HELIX 35 35 ALA B 228 TYR B 232 5 5 HELIX 36 36 ALA B 237 ALA B 250 1 14 HELIX 37 37 ASN B 252 PHE B 260 1 9 HELIX 38 38 HIS B 266 LYS B 272 1 7 HELIX 39 39 ASP B 273 HIS B 297 1 25 HELIX 40 40 SER B 302 ILE B 317 1 16 HELIX 41 41 LEU B 333 SER B 343 1 11 HELIX 42 42 LYS B 357 HIS B 377 1 21 HELIX 43 43 ARG B 394 GLY B 421 1 28 HELIX 44 44 ASP B 423 ASN B 436 1 14 HELIX 45 45 ASN B 453 LEU B 469 1 17 HELIX 46 46 ILE B 471 ILE B 476 1 6 SSBOND 1 CYS A 251 CYS A 348 1555 1555 2.07 SSBOND 2 CYS B 251 CYS B 348 1555 1555 2.07 LINK O ALA B 321 K K B 501 1555 1555 2.13 LINK O ALA A 321 K K A 501 1555 1555 2.21 LINK O THR B 112 K K B 501 1555 1555 2.39 LINK O THR A 320 K K A 501 1555 1555 2.50 LINK O GLY A 221 K K A 501 1555 1555 2.53 LINK O THR A 112 K K A 501 1555 1555 2.58 LINK O THR B 320 K K B 501 1555 1555 2.60 LINK O LEU B 438 K K B 501 1555 1555 2.61 LINK O GLY B 221 K K B 501 1555 1555 2.64 LINK O ILE A 220 K K A 501 1555 1555 2.82 LINK O ASN B 437 K K B 501 1555 1555 2.87 LINK O ASN A 437 K K A 501 1555 1555 2.90 LINK O LEU A 438 K K A 501 1555 1555 3.06 LINK O THR A 111 K K A 501 1555 1555 3.10 LINK O ILE B 220 K K B 501 1555 1555 3.26 LINK O THR B 111 K K B 501 1555 1555 3.39 SITE 1 AC1 8 THR A 111 THR A 112 ILE A 220 GLY A 221 SITE 2 AC1 8 THR A 320 ALA A 321 ASN A 437 LEU A 438 SITE 1 AC2 8 THR B 111 THR B 112 ILE B 220 GLY B 221 SITE 2 AC2 8 THR B 320 ALA B 321 ASN B 437 LEU B 438 CRYST1 91.489 97.406 195.653 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010930 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010266 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005111 0.00000 MTRIX1 1 -0.943618 -0.329577 -0.031037 -21.89230 1 MTRIX2 1 -0.325107 0.904972 0.274465 10.79650 1 MTRIX3 1 -0.062369 0.269080 -0.961096 -102.42700 1