PDB Short entry for 3Q2S HEADER NUCLEAR PROTEIN 20-DEC-10 3Q2S TITLE CRYSTAL STRUCTURE OF CFIM68 RRM/CFIM25 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 21-227; COMPND 5 SYNONYM: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 25 KDA COMPND 6 SUBUNIT, CPSF 25 KDA SUBUNIT, NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X COMPND 7 MOTIF 21, NUDIX MOTIF 21, PRE-MRNA CLEAVAGE FACTOR IM 25 KDA SUBUNIT; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: RRM DOMAIN, RESIDUES 13-235; COMPND 13 SYNONYM: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 68 KDA COMPND 14 SUBUNIT, CPSF 68 KDA SUBUNIT, PRE-MRNA CLEAVAGE FACTOR IM 68 KDA COMPND 15 SUBUNIT, PROTEIN HPBRII-4/7; COMPND 16 ENGINEERED: YES; COMPND 17 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CFIM25, CPSF25, CPSF5, NUDT21, OR CPSF5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: HIS6-MBP FUSION VECTOR; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: CFIM68, CPSF6; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3) PLYSS; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET22 C-TERMINAL HIS6 TAG KEYWDS CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END PROCESSING, RNA KEYWDS 2 PROCESSING, CLEAVAGE FACTOR, NUDIX PROTEIN, PROTEIN-PROTEIN COMPLEX, KEYWDS 3 RRM DOMAIN, NUDIX FOLD, RNA, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.YANG,M.COSENO,G.M.GILMARTIN,S.DOUBLIE REVDAT 5 13-SEP-23 3Q2S 1 REMARK SEQADV REVDAT 4 08-NOV-17 3Q2S 1 REMARK REVDAT 3 06-APR-11 3Q2S 1 JRNL REVDAT 2 23-FEB-11 3Q2S 1 AUTHOR REVDAT 1 16-FEB-11 3Q2S 0 JRNL AUTH Q.YANG,M.COSENO,G.M.GILMARTIN,S.DOUBLIE JRNL TITL CRYSTAL STRUCTURE OF A HUMAN CLEAVAGE FACTOR JRNL TITL 2 CFI(M)25/CFI(M)68/RNA COMPLEX PROVIDES AN INSIGHT INTO JRNL TITL 3 POLY(A) SITE RECOGNITION AND RNA LOOPING. JRNL REF STRUCTURE V. 19 368 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21295486 JRNL DOI 10.1016/J.STR.2010.12.021 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6_289 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.050 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.4 REMARK 3 NUMBER OF REFLECTIONS : 20194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.670 REMARK 3 FREE R VALUE TEST SET COUNT : 1804 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.5096 - 6.3832 0.92 3243 188 0.1850 0.2201 REMARK 3 2 6.3832 - 5.0963 0.88 3103 162 0.2072 0.2800 REMARK 3 3 5.0963 - 4.4609 0.87 3039 154 0.1636 0.2082 REMARK 3 4 4.4609 - 4.0570 0.84 2959 170 0.1783 0.3011 REMARK 3 5 4.0570 - 3.7685 0.79 2771 139 0.2025 0.2600 REMARK 3 6 3.7685 - 3.5477 0.85 2977 151 0.2514 0.3229 REMARK 3 7 3.5477 - 3.3710 0.75 2617 135 0.2461 0.3592 REMARK 3 8 3.3710 - 3.2249 0.78 2722 107 0.2620 0.4104 REMARK 3 9 3.2249 - 3.1013 0.70 2421 124 0.3004 0.3172 REMARK 3 10 3.1013 - 2.9946 0.64 2251 121 0.3127 0.4161 REMARK 3 11 2.9946 - 2.9013 0.60 2110 117 0.3405 0.3903 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.25 REMARK 3 B_SOL : 29.75 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.0400 REMARK 3 OPERATOR: L,-K,H REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4966 REMARK 3 ANGLE : 0.943 6739 REMARK 3 CHIRALITY : 0.061 733 REMARK 3 PLANARITY : 0.004 871 REMARK 3 DIHEDRAL : 17.179 1852 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q2S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063121. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MAR MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20194 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 22.50 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3BHO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M MAGNESIUM FORMATE, REMARK 280 0.05M HEPES PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 69.66150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.66150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.66150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.66150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 69.66150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.66150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 69.66150 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 69.66150 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 69.66150 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 69.66150 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 69.66150 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 69.66150 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 69.66150 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 69.66150 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 69.66150 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 69.66150 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 69.66150 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 69.66150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL B 135 REMARK 465 LEU B 136 REMARK 465 GLN B 137 REMARK 465 ASP B 138 REMARK 465 ASP C 13 REMARK 465 VAL C 14 REMARK 465 GLY C 15 REMARK 465 GLU C 16 REMARK 465 GLU C 17 REMARK 465 PHE C 18 REMARK 465 ASN C 19 REMARK 465 GLN C 20 REMARK 465 GLU C 21 REMARK 465 ALA C 22 REMARK 465 GLU C 23 REMARK 465 TYR C 24 REMARK 465 GLY C 25 REMARK 465 GLY C 26 REMARK 465 HIS C 27 REMARK 465 ASP C 28 REMARK 465 GLN C 29 REMARK 465 ILE C 30 REMARK 465 ASP C 31 REMARK 465 LEU C 32 REMARK 465 TYR C 33 REMARK 465 ASP C 34 REMARK 465 ASP C 35 REMARK 465 VAL C 36 REMARK 465 ILE C 37 REMARK 465 SER C 38 REMARK 465 PRO C 39 REMARK 465 SER C 40 REMARK 465 ALA C 41 REMARK 465 ASN C 42 REMARK 465 ASN C 43 REMARK 465 GLY C 44 REMARK 465 ASP C 45 REMARK 465 ALA C 46 REMARK 465 PRO C 47 REMARK 465 GLU C 48 REMARK 465 ASP C 49 REMARK 465 ARG C 50 REMARK 465 ASP C 51 REMARK 465 TYR C 52 REMARK 465 MET C 53 REMARK 465 ASP C 54 REMARK 465 THR C 55 REMARK 465 LEU C 56 REMARK 465 PRO C 57 REMARK 465 PRO C 58 REMARK 465 THR C 59 REMARK 465 VAL C 60 REMARK 465 GLY C 61 REMARK 465 ASP C 62 REMARK 465 ASP C 63 REMARK 465 VAL C 64 REMARK 465 GLY C 65 REMARK 465 LYS C 66 REMARK 465 GLY C 67 REMARK 465 ALA C 68 REMARK 465 ALA C 69 REMARK 465 PRO C 70 REMARK 465 ASN C 71 REMARK 465 VAL C 72 REMARK 465 VAL C 73 REMARK 465 TYR C 74 REMARK 465 THR C 75 REMARK 465 TYR C 76 REMARK 465 THR C 77 REMARK 465 GLY C 78 REMARK 465 LYS C 79 REMARK 465 ARG C 80 REMARK 465 THR C 174 REMARK 465 THR C 175 REMARK 465 GLN C 176 REMARK 465 SER C 177 REMARK 465 GLY C 178 REMARK 465 GLN C 179 REMARK 465 MET C 180 REMARK 465 SER C 181 REMARK 465 GLY C 182 REMARK 465 GLU C 183 REMARK 465 GLY C 184 REMARK 465 LYS C 185 REMARK 465 ALA C 186 REMARK 465 GLY C 187 REMARK 465 PRO C 188 REMARK 465 PRO C 189 REMARK 465 GLY C 190 REMARK 465 GLY C 191 REMARK 465 SER C 192 REMARK 465 SER C 193 REMARK 465 ARG C 194 REMARK 465 ALA C 195 REMARK 465 ALA C 196 REMARK 465 PHE C 197 REMARK 465 PRO C 198 REMARK 465 GLN C 199 REMARK 465 GLY C 200 REMARK 465 GLY C 201 REMARK 465 ARG C 202 REMARK 465 GLY C 203 REMARK 465 ARG C 204 REMARK 465 GLY C 205 REMARK 465 ARG C 206 REMARK 465 PHE C 207 REMARK 465 PRO C 208 REMARK 465 GLY C 209 REMARK 465 ALA C 210 REMARK 465 VAL C 211 REMARK 465 PRO C 212 REMARK 465 GLY C 213 REMARK 465 GLY C 214 REMARK 465 ASP C 215 REMARK 465 ARG C 216 REMARK 465 PHE C 217 REMARK 465 PRO C 218 REMARK 465 GLY C 219 REMARK 465 PRO C 220 REMARK 465 ALA C 221 REMARK 465 GLY C 222 REMARK 465 PRO C 223 REMARK 465 GLY C 224 REMARK 465 GLY C 225 REMARK 465 PRO C 226 REMARK 465 PRO C 227 REMARK 465 PRO C 228 REMARK 465 PRO C 229 REMARK 465 PHE C 230 REMARK 465 PRO C 231 REMARK 465 ALA C 232 REMARK 465 GLY C 233 REMARK 465 GLN C 234 REMARK 465 THR C 235 REMARK 465 HIS C 236 REMARK 465 HIS C 237 REMARK 465 HIS C 238 REMARK 465 HIS C 239 REMARK 465 HIS C 240 REMARK 465 HIS C 241 REMARK 465 ASP D 13 REMARK 465 VAL D 14 REMARK 465 GLY D 15 REMARK 465 GLU D 16 REMARK 465 GLU D 17 REMARK 465 PHE D 18 REMARK 465 ASN D 19 REMARK 465 GLN D 20 REMARK 465 GLU D 21 REMARK 465 ALA D 22 REMARK 465 GLU D 23 REMARK 465 TYR D 24 REMARK 465 GLY D 25 REMARK 465 GLY D 26 REMARK 465 HIS D 27 REMARK 465 ASP D 28 REMARK 465 GLN D 29 REMARK 465 ILE D 30 REMARK 465 ASP D 31 REMARK 465 LEU D 32 REMARK 465 TYR D 33 REMARK 465 ASP D 34 REMARK 465 ASP D 35 REMARK 465 VAL D 36 REMARK 465 ILE D 37 REMARK 465 SER D 38 REMARK 465 PRO D 39 REMARK 465 SER D 40 REMARK 465 ALA D 41 REMARK 465 ASN D 42 REMARK 465 ASN D 43 REMARK 465 GLY D 44 REMARK 465 ASP D 45 REMARK 465 ALA D 46 REMARK 465 PRO D 47 REMARK 465 GLU D 48 REMARK 465 ASP D 49 REMARK 465 ARG D 50 REMARK 465 ASP D 51 REMARK 465 TYR D 52 REMARK 465 MET D 53 REMARK 465 ASP D 54 REMARK 465 THR D 55 REMARK 465 LEU D 56 REMARK 465 PRO D 57 REMARK 465 PRO D 58 REMARK 465 THR D 59 REMARK 465 VAL D 60 REMARK 465 GLY D 61 REMARK 465 ASP D 62 REMARK 465 ASP D 63 REMARK 465 VAL D 64 REMARK 465 GLY D 65 REMARK 465 LYS D 66 REMARK 465 GLY D 67 REMARK 465 ALA D 68 REMARK 465 ALA D 69 REMARK 465 PRO D 70 REMARK 465 ASN D 71 REMARK 465 VAL D 72 REMARK 465 VAL D 73 REMARK 465 TYR D 74 REMARK 465 THR D 75 REMARK 465 TYR D 76 REMARK 465 THR D 77 REMARK 465 GLY D 78 REMARK 465 LYS D 79 REMARK 465 ARG D 80 REMARK 465 LYS D 173 REMARK 465 THR D 174 REMARK 465 THR D 175 REMARK 465 GLN D 176 REMARK 465 SER D 177 REMARK 465 GLY D 178 REMARK 465 GLN D 179 REMARK 465 MET D 180 REMARK 465 SER D 181 REMARK 465 GLY D 182 REMARK 465 GLU D 183 REMARK 465 GLY D 184 REMARK 465 LYS D 185 REMARK 465 ALA D 186 REMARK 465 GLY D 187 REMARK 465 PRO D 188 REMARK 465 PRO D 189 REMARK 465 GLY D 190 REMARK 465 GLY D 191 REMARK 465 SER D 192 REMARK 465 SER D 193 REMARK 465 ARG D 194 REMARK 465 ALA D 195 REMARK 465 ALA D 196 REMARK 465 PHE D 197 REMARK 465 PRO D 198 REMARK 465 GLN D 199 REMARK 465 GLY D 200 REMARK 465 GLY D 201 REMARK 465 ARG D 202 REMARK 465 GLY D 203 REMARK 465 ARG D 204 REMARK 465 GLY D 205 REMARK 465 ARG D 206 REMARK 465 PHE D 207 REMARK 465 PRO D 208 REMARK 465 GLY D 209 REMARK 465 ALA D 210 REMARK 465 VAL D 211 REMARK 465 PRO D 212 REMARK 465 GLY D 213 REMARK 465 GLY D 214 REMARK 465 ASP D 215 REMARK 465 ARG D 216 REMARK 465 PHE D 217 REMARK 465 PRO D 218 REMARK 465 GLY D 219 REMARK 465 PRO D 220 REMARK 465 ALA D 221 REMARK 465 GLY D 222 REMARK 465 PRO D 223 REMARK 465 GLY D 224 REMARK 465 GLY D 225 REMARK 465 PRO D 226 REMARK 465 PRO D 227 REMARK 465 PRO D 228 REMARK 465 PRO D 229 REMARK 465 PHE D 230 REMARK 465 PRO D 231 REMARK 465 ALA D 232 REMARK 465 GLY D 233 REMARK 465 GLN D 234 REMARK 465 THR D 235 REMARK 465 HIS D 236 REMARK 465 HIS D 237 REMARK 465 HIS D 238 REMARK 465 HIS D 239 REMARK 465 HIS D 240 REMARK 465 HIS D 241 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 173 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 51 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 57 -158.74 -108.21 REMARK 500 SER A 58 164.60 178.07 REMARK 500 SER A 59 117.75 45.20 REMARK 500 VAL A 60 -81.54 -24.77 REMARK 500 PRO A 113 128.70 -31.29 REMARK 500 PHE A 153 45.74 -79.67 REMARK 500 SER B 59 -168.87 -102.70 REMARK 500 LEU B 99 -84.45 -120.29 REMARK 500 LEU B 129 -151.25 -114.79 REMARK 500 LEU B 129 -151.76 -114.31 REMARK 500 ILE B 211 -72.93 -73.89 REMARK 500 SER C 103 37.24 -78.28 REMARK 500 ASP C 108 70.03 -113.40 REMARK 500 GLU C 111 165.17 49.24 REMARK 500 ASN C 160 144.84 -175.70 REMARK 500 ARG C 172 59.34 -108.39 REMARK 500 THR D 93 -178.87 -61.67 REMARK 500 ILE D 109 120.33 -35.60 REMARK 500 PHE D 126 148.12 -173.22 REMARK 500 LEU D 143 -70.51 -94.40 REMARK 500 PRO D 145 37.98 -63.35 REMARK 500 LYS D 146 -15.08 -143.37 REMARK 500 LEU D 149 -71.50 -58.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3Q2T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CFIM68 RRM/CFIM25/RNA COMPLEX DBREF 3Q2S A 21 227 UNP O43809 CPSF5_HUMAN 21 227 DBREF 3Q2S B 21 227 UNP O43809 CPSF5_HUMAN 21 227 DBREF 3Q2S C 13 235 UNP Q16630 CPSF6_HUMAN 13 235 DBREF 3Q2S D 13 235 UNP Q16630 CPSF6_HUMAN 13 235 SEQADV 3Q2S VAL C 159 UNP Q16630 CYS 159 ENGINEERED MUTATION SEQADV 3Q2S HIS C 236 UNP Q16630 EXPRESSION TAG SEQADV 3Q2S HIS C 237 UNP Q16630 EXPRESSION TAG SEQADV 3Q2S HIS C 238 UNP Q16630 EXPRESSION TAG SEQADV 3Q2S HIS C 239 UNP Q16630 EXPRESSION TAG SEQADV 3Q2S HIS C 240 UNP Q16630 EXPRESSION TAG SEQADV 3Q2S HIS C 241 UNP Q16630 EXPRESSION TAG SEQADV 3Q2S VAL D 159 UNP Q16630 CYS 159 ENGINEERED MUTATION SEQADV 3Q2S HIS D 236 UNP Q16630 EXPRESSION TAG SEQADV 3Q2S HIS D 237 UNP Q16630 EXPRESSION TAG SEQADV 3Q2S HIS D 238 UNP Q16630 EXPRESSION TAG SEQADV 3Q2S HIS D 239 UNP Q16630 EXPRESSION TAG SEQADV 3Q2S HIS D 240 UNP Q16630 EXPRESSION TAG SEQADV 3Q2S HIS D 241 UNP Q16630 EXPRESSION TAG SEQRES 1 A 207 GLY ASN LYS TYR ILE GLN GLN THR LYS PRO LEU THR LEU SEQRES 2 A 207 GLU ARG THR ILE ASN LEU TYR PRO LEU THR ASN TYR THR SEQRES 3 A 207 PHE GLY THR LYS GLU PRO LEU TYR GLU LYS ASP SER SER SEQRES 4 A 207 VAL ALA ALA ARG PHE GLN ARG MET ARG GLU GLU PHE ASP SEQRES 5 A 207 LYS ILE GLY MET ARG ARG THR VAL GLU GLY VAL LEU ILE SEQRES 6 A 207 VAL HIS GLU HIS ARG LEU PRO HIS VAL LEU LEU LEU GLN SEQRES 7 A 207 LEU GLY THR THR PHE PHE LYS LEU PRO GLY GLY GLU LEU SEQRES 8 A 207 ASN PRO GLY GLU ASP GLU VAL GLU GLY LEU LYS ARG LEU SEQRES 9 A 207 MET THR GLU ILE LEU GLY ARG GLN ASP GLY VAL LEU GLN SEQRES 10 A 207 ASP TRP VAL ILE ASP ASP CYS ILE GLY ASN TRP TRP ARG SEQRES 11 A 207 PRO ASN PHE GLU PRO PRO GLN TYR PRO TYR ILE PRO ALA SEQRES 12 A 207 HIS ILE THR LYS PRO LYS GLU HIS LYS LYS LEU PHE LEU SEQRES 13 A 207 VAL GLN LEU GLN GLU LYS ALA LEU PHE ALA VAL PRO LYS SEQRES 14 A 207 ASN TYR LYS LEU VAL ALA ALA PRO LEU PHE GLU LEU TYR SEQRES 15 A 207 ASP ASN ALA PRO GLY TYR GLY PRO ILE ILE SER SER LEU SEQRES 16 A 207 PRO GLN LEU LEU SER ARG PHE ASN PHE ILE TYR ASN SEQRES 1 B 207 GLY ASN LYS TYR ILE GLN GLN THR LYS PRO LEU THR LEU SEQRES 2 B 207 GLU ARG THR ILE ASN LEU TYR PRO LEU THR ASN TYR THR SEQRES 3 B 207 PHE GLY THR LYS GLU PRO LEU TYR GLU LYS ASP SER SER SEQRES 4 B 207 VAL ALA ALA ARG PHE GLN ARG MET ARG GLU GLU PHE ASP SEQRES 5 B 207 LYS ILE GLY MET ARG ARG THR VAL GLU GLY VAL LEU ILE SEQRES 6 B 207 VAL HIS GLU HIS ARG LEU PRO HIS VAL LEU LEU LEU GLN SEQRES 7 B 207 LEU GLY THR THR PHE PHE LYS LEU PRO GLY GLY GLU LEU SEQRES 8 B 207 ASN PRO GLY GLU ASP GLU VAL GLU GLY LEU LYS ARG LEU SEQRES 9 B 207 MET THR GLU ILE LEU GLY ARG GLN ASP GLY VAL LEU GLN SEQRES 10 B 207 ASP TRP VAL ILE ASP ASP CYS ILE GLY ASN TRP TRP ARG SEQRES 11 B 207 PRO ASN PHE GLU PRO PRO GLN TYR PRO TYR ILE PRO ALA SEQRES 12 B 207 HIS ILE THR LYS PRO LYS GLU HIS LYS LYS LEU PHE LEU SEQRES 13 B 207 VAL GLN LEU GLN GLU LYS ALA LEU PHE ALA VAL PRO LYS SEQRES 14 B 207 ASN TYR LYS LEU VAL ALA ALA PRO LEU PHE GLU LEU TYR SEQRES 15 B 207 ASP ASN ALA PRO GLY TYR GLY PRO ILE ILE SER SER LEU SEQRES 16 B 207 PRO GLN LEU LEU SER ARG PHE ASN PHE ILE TYR ASN SEQRES 1 C 229 ASP VAL GLY GLU GLU PHE ASN GLN GLU ALA GLU TYR GLY SEQRES 2 C 229 GLY HIS ASP GLN ILE ASP LEU TYR ASP ASP VAL ILE SER SEQRES 3 C 229 PRO SER ALA ASN ASN GLY ASP ALA PRO GLU ASP ARG ASP SEQRES 4 C 229 TYR MET ASP THR LEU PRO PRO THR VAL GLY ASP ASP VAL SEQRES 5 C 229 GLY LYS GLY ALA ALA PRO ASN VAL VAL TYR THR TYR THR SEQRES 6 C 229 GLY LYS ARG ILE ALA LEU TYR ILE GLY ASN LEU THR TRP SEQRES 7 C 229 TRP THR THR ASP GLU ASP LEU THR GLU ALA VAL HIS SER SEQRES 8 C 229 LEU GLY VAL ASN ASP ILE LEU GLU ILE LYS PHE PHE GLU SEQRES 9 C 229 ASN ARG ALA ASN GLY GLN SER LYS GLY PHE ALA LEU VAL SEQRES 10 C 229 GLY VAL GLY SER GLU ALA SER SER LYS LYS LEU MET ASP SEQRES 11 C 229 LEU LEU PRO LYS ARG GLU LEU HIS GLY GLN ASN PRO VAL SEQRES 12 C 229 VAL THR PRO VAL ASN LYS GLN PHE LEU SER GLN PHE GLU SEQRES 13 C 229 MET GLN SER ARG LYS THR THR GLN SER GLY GLN MET SER SEQRES 14 C 229 GLY GLU GLY LYS ALA GLY PRO PRO GLY GLY SER SER ARG SEQRES 15 C 229 ALA ALA PHE PRO GLN GLY GLY ARG GLY ARG GLY ARG PHE SEQRES 16 C 229 PRO GLY ALA VAL PRO GLY GLY ASP ARG PHE PRO GLY PRO SEQRES 17 C 229 ALA GLY PRO GLY GLY PRO PRO PRO PRO PHE PRO ALA GLY SEQRES 18 C 229 GLN THR HIS HIS HIS HIS HIS HIS SEQRES 1 D 229 ASP VAL GLY GLU GLU PHE ASN GLN GLU ALA GLU TYR GLY SEQRES 2 D 229 GLY HIS ASP GLN ILE ASP LEU TYR ASP ASP VAL ILE SER SEQRES 3 D 229 PRO SER ALA ASN ASN GLY ASP ALA PRO GLU ASP ARG ASP SEQRES 4 D 229 TYR MET ASP THR LEU PRO PRO THR VAL GLY ASP ASP VAL SEQRES 5 D 229 GLY LYS GLY ALA ALA PRO ASN VAL VAL TYR THR TYR THR SEQRES 6 D 229 GLY LYS ARG ILE ALA LEU TYR ILE GLY ASN LEU THR TRP SEQRES 7 D 229 TRP THR THR ASP GLU ASP LEU THR GLU ALA VAL HIS SER SEQRES 8 D 229 LEU GLY VAL ASN ASP ILE LEU GLU ILE LYS PHE PHE GLU SEQRES 9 D 229 ASN ARG ALA ASN GLY GLN SER LYS GLY PHE ALA LEU VAL SEQRES 10 D 229 GLY VAL GLY SER GLU ALA SER SER LYS LYS LEU MET ASP SEQRES 11 D 229 LEU LEU PRO LYS ARG GLU LEU HIS GLY GLN ASN PRO VAL SEQRES 12 D 229 VAL THR PRO VAL ASN LYS GLN PHE LEU SER GLN PHE GLU SEQRES 13 D 229 MET GLN SER ARG LYS THR THR GLN SER GLY GLN MET SER SEQRES 14 D 229 GLY GLU GLY LYS ALA GLY PRO PRO GLY GLY SER SER ARG SEQRES 15 D 229 ALA ALA PHE PRO GLN GLY GLY ARG GLY ARG GLY ARG PHE SEQRES 16 D 229 PRO GLY ALA VAL PRO GLY GLY ASP ARG PHE PRO GLY PRO SEQRES 17 D 229 ALA GLY PRO GLY GLY PRO PRO PRO PRO PHE PRO ALA GLY SEQRES 18 D 229 GLN THR HIS HIS HIS HIS HIS HIS FORMUL 5 HOH *20(H2 O) HELIX 1 1 PRO A 41 THR A 43 5 3 HELIX 2 2 SER A 59 ILE A 74 1 16 HELIX 3 3 ASP A 116 GLY A 130 1 15 HELIX 4 4 LEU A 198 TYR A 202 1 5 HELIX 5 5 ASN A 204 GLY A 209 1 6 HELIX 6 6 ILE A 211 SER A 213 5 3 HELIX 7 7 SER A 214 SER A 220 1 7 HELIX 8 8 PRO B 41 THR B 43 5 3 HELIX 9 9 ALA B 61 ILE B 74 1 14 HELIX 10 10 ASP B 116 LEU B 129 1 14 HELIX 11 11 LEU B 198 TYR B 202 1 5 HELIX 12 12 ASN B 204 GLY B 209 1 6 HELIX 13 13 ILE B 211 SER B 213 5 3 HELIX 14 14 SER B 214 SER B 220 1 7 HELIX 15 15 THR C 93 SER C 103 1 11 HELIX 16 16 ALA C 135 ASP C 142 1 8 HELIX 17 17 ASN C 160 SER C 171 1 12 HELIX 18 18 ASP D 94 GLY D 105 1 12 HELIX 19 19 SER D 136 LEU D 143 1 8 HELIX 20 20 ASN D 160 MET D 169 1 10 SHEET 1 A 2 ARG A 35 LEU A 39 0 SHEET 2 A 2 PHE A 222 TYR A 226 1 O ASN A 223 N ILE A 37 SHEET 1 B 2 TYR A 45 LYS A 50 0 SHEET 2 B 2 ALA A 183 PRO A 188 1 O PHE A 185 N GLY A 48 SHEET 1 C 5 PHE A 103 LYS A 105 0 SHEET 2 C 5 PRO A 92 LEU A 99 -1 N LEU A 99 O PHE A 103 SHEET 3 C 5 ARG A 77 HIS A 87 -1 N VAL A 86 O HIS A 93 SHEET 4 C 5 GLU A 170 GLN A 178 1 O HIS A 171 N ARG A 77 SHEET 5 C 5 VAL A 140 ARG A 150 -1 N ILE A 145 O LEU A 174 SHEET 1 D 4 GLY A 108 GLU A 110 0 SHEET 2 D 4 ARG A 77 HIS A 87 -1 N VAL A 80 O GLY A 109 SHEET 3 D 4 PRO A 92 LEU A 99 -1 O HIS A 93 N VAL A 86 SHEET 4 D 4 LYS A 192 PRO A 197 -1 O VAL A 194 N LEU A 96 SHEET 1 E 2 THR B 36 LEU B 39 0 SHEET 2 E 2 ASN B 223 TYR B 226 1 O ILE B 225 N LEU B 39 SHEET 1 F 2 TYR B 45 PHE B 47 0 SHEET 2 F 2 ALA B 183 PHE B 185 1 O PHE B 185 N THR B 46 SHEET 1 G 4 GLY B 108 GLU B 110 0 SHEET 2 G 4 ARG B 77 VAL B 83 -1 N VAL B 80 O GLY B 109 SHEET 3 G 4 GLU B 170 GLN B 178 1 O VAL B 177 N VAL B 83 SHEET 4 G 4 VAL B 140 ARG B 150 -1 N TRP B 148 O LYS B 172 SHEET 1 H 3 ILE B 85 GLU B 88 0 SHEET 2 H 3 LEU B 91 GLN B 98 -1 O HIS B 93 N VAL B 86 SHEET 3 H 3 PHE B 104 LYS B 105 -1 O LYS B 105 N LEU B 97 SHEET 1 I 3 ILE B 85 GLU B 88 0 SHEET 2 I 3 LEU B 91 GLN B 98 -1 O HIS B 93 N VAL B 86 SHEET 3 I 3 LYS B 192 PRO B 197 -1 O ALA B 196 N VAL B 94 SHEET 1 J 4 ILE C 109 GLU C 116 0 SHEET 2 J 4 SER C 123 VAL C 131 -1 O LYS C 124 N PHE C 115 SHEET 3 J 4 ALA C 82 GLY C 86 -1 N LEU C 83 O VAL C 129 SHEET 4 J 4 VAL C 155 PRO C 158 -1 O THR C 157 N TYR C 84 SHEET 1 K 4 ILE D 109 GLU D 116 0 SHEET 2 K 4 SER D 123 VAL D 131 -1 O GLY D 130 N LEU D 110 SHEET 3 K 4 LEU D 83 GLY D 86 -1 N ILE D 85 O ALA D 127 SHEET 4 K 4 THR D 157 PRO D 158 -1 O THR D 157 N TYR D 84 CRYST1 139.323 139.323 139.323 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007178 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007178 0.00000