PDB Short entry for 3Q72 HEADER SIGNALING PROTEIN 04-JAN-11 3Q72 TITLE CRYSTAL STRUCTURE OF RAD G-DOMAIN-GTP ANALOG COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING PROTEIN RAD; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: G-DOMAIN, RESIDUES 90-255; COMPND 5 SYNONYM: RAD1, RAS ASSOCIATED WITH DIABETES; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RRAD, RAD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21D KEYWDS G-DOMAIN, G-PROTEIN, CAV2 BETA, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.SASSON,L.NAVON-PERRY,J.A.HIRSCH REVDAT 3 21-FEB-24 3Q72 1 REMARK LINK REVDAT 2 26-OCT-11 3Q72 1 JRNL REVDAT 1 21-SEP-11 3Q72 0 JRNL AUTH Y.SASSON,L.NAVON-PERRY,D.HUPPERT,J.A.HIRSCH JRNL TITL RGK FAMILY G-DOMAIN:GTP ANALOG COMPLEX STRUCTURES AND JRNL TITL 2 NUCLEOTIDE-BINDING PROPERTIES. JRNL REF J.MOL.BIOL. V. 413 372 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21903096 JRNL DOI 10.1016/J.JMB.2011.08.017 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.090 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 29628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.740 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 15.5737 - 3.9688 0.74 1661 111 0.1117 0.1824 REMARK 3 2 3.9688 - 3.1588 0.89 2023 146 0.1095 0.1689 REMARK 3 3 3.1588 - 2.7620 0.93 2089 135 0.1525 0.2428 REMARK 3 4 2.7620 - 2.5106 0.93 2083 152 0.1773 0.2905 REMARK 3 5 2.5106 - 2.3313 0.93 2097 154 0.1911 0.2167 REMARK 3 6 2.3313 - 2.1943 0.93 2081 148 0.2060 0.2664 REMARK 3 7 2.1943 - 2.0846 0.93 2117 168 0.2323 0.2063 REMARK 3 8 2.0846 - 1.9941 0.94 2079 136 0.2330 0.2616 REMARK 3 9 1.9941 - 1.9175 0.92 2085 151 0.2572 0.2683 REMARK 3 10 1.9175 - 1.8514 0.92 2051 141 0.2672 0.3266 REMARK 3 11 1.8514 - 1.7936 0.90 2032 137 0.2852 0.2937 REMARK 3 12 1.7936 - 1.7424 0.89 2016 134 0.2993 0.2827 REMARK 3 13 1.7424 - 1.6966 0.82 1804 132 0.3051 0.3421 REMARK 3 14 1.6966 - 1.6552 0.62 1427 105 0.3176 0.3339 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.42 REMARK 3 B_SOL : 62.91 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.42880 REMARK 3 B22 (A**2) : 3.42880 REMARK 3 B33 (A**2) : -6.85760 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2333 REMARK 3 ANGLE : 1.092 3163 REMARK 3 CHIRALITY : 0.063 362 REMARK 3 PLANARITY : 0.003 391 REMARK 3 DIHEDRAL : 17.390 866 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q72 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063275. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30044 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 59.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.33700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX (AUTOMR) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 400, 5% ETHYLENE GLYCOL 0.1M REMARK 280 MES, 0.2M CALCIUM ACETATE,, PH 5.7, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.55700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 103.11400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 115 REMARK 465 ASP A 116 REMARK 465 GLY A 117 REMARK 465 PRO A 118 REMARK 465 GLU A 119 REMARK 465 ALA A 120 REMARK 465 GLU A 121 REMARK 465 ALA A 122 REMARK 465 ALA A 123 REMARK 465 GLY A 124 REMARK 465 GLU A 147 REMARK 465 GLN A 148 REMARK 465 ASP A 149 REMARK 465 GLY A 150 REMARK 465 GLY A 151 REMARK 465 ARG A 152 REMARK 465 TRP A 153 REMARK 465 LEU A 154 REMARK 465 PRO A 155 REMARK 465 GLY A 156 REMARK 465 HIS A 157 REMARK 465 CYS A 158 REMARK 465 MET A 159 REMARK 465 ALA A 160 REMARK 465 MET A 161 REMARK 465 GLN A 192 REMARK 465 THR A 193 REMARK 465 ASP A 194 REMARK 465 GLU B 115 REMARK 465 ASP B 116 REMARK 465 GLY B 117 REMARK 465 PRO B 118 REMARK 465 GLU B 119 REMARK 465 ALA B 120 REMARK 465 GLU B 121 REMARK 465 ALA B 122 REMARK 465 GLN B 148 REMARK 465 ASP B 149 REMARK 465 GLY B 150 REMARK 465 GLY B 151 REMARK 465 ARG B 152 REMARK 465 TRP B 153 REMARK 465 LEU B 154 REMARK 465 PRO B 155 REMARK 465 GLY B 156 REMARK 465 HIS B 157 REMARK 465 CYS B 158 REMARK 465 MET B 159 REMARK 465 THR B 193 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 114 CG1 CG2 REMARK 470 THR A 126 OG1 CG2 REMARK 470 ASP A 128 CG OD1 OD2 REMARK 470 ASP A 195 CG OD1 OD2 REMARK 470 VAL B 114 CG1 CG2 REMARK 470 GLU B 178 CD OE1 OE2 REMARK 470 ASP B 195 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 217 O HOH B 262 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 129 137.48 177.93 REMARK 500 LYS A 204 33.07 70.89 REMARK 500 VAL B 91 23.96 112.36 REMARK 500 ARG B 129 128.87 157.76 REMARK 500 MET B 161 -49.69 82.18 REMARK 500 ARG B 191 -125.17 67.11 REMARK 500 LYS B 204 35.49 75.28 REMARK 500 ARG B 254 43.79 -79.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 252 O REMARK 620 2 HOH A 263 O 147.5 REMARK 620 3 HOH A 269 O 75.9 97.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 257 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 6 O REMARK 620 2 HOH A 17 O 166.0 REMARK 620 3 HOH A 84 O 97.2 96.7 REMARK 620 4 SER A 105 OG 88.2 91.4 98.8 REMARK 620 5 GNP A 256 O3G 79.2 97.1 98.4 159.8 REMARK 620 6 GNP A 256 O2B 71.6 94.5 168.5 83.5 77.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 87 O REMARK 620 2 ARG B 252 O 94.8 REMARK 620 3 ARG B 252 O 93.9 2.4 REMARK 620 4 ARG B 255 O 152.9 58.2 59.1 REMARK 620 5 HOH B 266 O 56.3 107.1 108.4 128.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 257 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 14 O REMARK 620 2 HOH B 21 O 169.8 REMARK 620 3 SER B 105 OG 82.5 103.5 REMARK 620 4 GLU B 147 OE1 72.3 98.1 102.8 REMARK 620 5 GNP B 256 O3G 70.7 105.1 149.8 82.4 REMARK 620 6 GNP B 256 O2B 93.4 95.0 87.8 160.6 80.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 256 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B 256 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DPX RELATED DB: PDB REMARK 900 RELATED ID: 3Q7P RELATED DB: PDB REMARK 900 RELATED ID: 3Q7Q RELATED DB: PDB DBREF 3Q72 A 90 255 UNP P55042 RAD_HUMAN 90 255 DBREF 3Q72 B 90 255 UNP P55042 RAD_HUMAN 90 255 SEQRES 1 A 166 SER VAL TYR LYS VAL LEU LEU LEU GLY ALA PRO GLY VAL SEQRES 2 A 166 GLY LYS SER ALA LEU ALA ARG ILE PHE GLY GLY VAL GLU SEQRES 3 A 166 ASP GLY PRO GLU ALA GLU ALA ALA GLY HIS THR TYR ASP SEQRES 4 A 166 ARG SER ILE VAL VAL ASP GLY GLU GLU ALA SER LEU MET SEQRES 5 A 166 VAL TYR ASP ILE TRP GLU GLN ASP GLY GLY ARG TRP LEU SEQRES 6 A 166 PRO GLY HIS CYS MET ALA MET GLY ASP ALA TYR VAL ILE SEQRES 7 A 166 VAL TYR SER VAL THR ASP LYS GLY SER PHE GLU LYS ALA SEQRES 8 A 166 SER GLU LEU ARG VAL GLN LEU ARG ARG ALA ARG GLN THR SEQRES 9 A 166 ASP ASP VAL PRO ILE ILE LEU VAL GLY ASN LYS SER ASP SEQRES 10 A 166 LEU VAL ARG SER ARG GLU VAL SER VAL ASP GLU GLY ARG SEQRES 11 A 166 ALA CYS ALA VAL VAL PHE ASP CYS LYS PHE ILE GLU THR SEQRES 12 A 166 SER ALA ALA LEU HIS HIS ASN VAL GLN ALA LEU PHE GLU SEQRES 13 A 166 GLY VAL VAL ARG GLN ILE ARG LEU ARG ARG SEQRES 1 B 166 SER VAL TYR LYS VAL LEU LEU LEU GLY ALA PRO GLY VAL SEQRES 2 B 166 GLY LYS SER ALA LEU ALA ARG ILE PHE GLY GLY VAL GLU SEQRES 3 B 166 ASP GLY PRO GLU ALA GLU ALA ALA GLY HIS THR TYR ASP SEQRES 4 B 166 ARG SER ILE VAL VAL ASP GLY GLU GLU ALA SER LEU MET SEQRES 5 B 166 VAL TYR ASP ILE TRP GLU GLN ASP GLY GLY ARG TRP LEU SEQRES 6 B 166 PRO GLY HIS CYS MET ALA MET GLY ASP ALA TYR VAL ILE SEQRES 7 B 166 VAL TYR SER VAL THR ASP LYS GLY SER PHE GLU LYS ALA SEQRES 8 B 166 SER GLU LEU ARG VAL GLN LEU ARG ARG ALA ARG GLN THR SEQRES 9 B 166 ASP ASP VAL PRO ILE ILE LEU VAL GLY ASN LYS SER ASP SEQRES 10 B 166 LEU VAL ARG SER ARG GLU VAL SER VAL ASP GLU GLY ARG SEQRES 11 B 166 ALA CYS ALA VAL VAL PHE ASP CYS LYS PHE ILE GLU THR SEQRES 12 B 166 SER ALA ALA LEU HIS HIS ASN VAL GLN ALA LEU PHE GLU SEQRES 13 B 166 GLY VAL VAL ARG GLN ILE ARG LEU ARG ARG HET GNP A 256 32 HET MG A 257 1 HET CA A 1 1 HET GNP B 256 32 HET MG B 257 1 HET CA B 1 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM CA CALCIUM ION FORMUL 3 GNP 2(C10 H17 N6 O13 P3) FORMUL 4 MG 2(MG 2+) FORMUL 5 CA 2(CA 2+) FORMUL 9 HOH *126(H2 O) HELIX 1 1 GLY A 103 GLY A 112 1 10 HELIX 2 2 ASP A 173 ALA A 190 1 18 HELIX 3 3 SER A 214 PHE A 225 1 12 HELIX 4 4 SER A 233 HIS A 237 5 5 HELIX 5 5 ASN A 239 ARG A 255 1 17 HELIX 6 6 GLY B 103 GLY B 113 1 11 HELIX 7 7 ASP B 173 ARG B 189 1 17 HELIX 8 8 SER B 214 PHE B 225 1 12 HELIX 9 9 ASN B 239 ARG B 254 1 16 SHEET 1 A 6 THR A 126 VAL A 133 0 SHEET 2 A 6 GLU A 136 ASP A 144 -1 O LEU A 140 N ARG A 129 SHEET 3 A 6 LYS A 93 GLY A 98 1 N VAL A 94 O TYR A 143 SHEET 4 A 6 ALA A 164 SER A 170 1 O VAL A 166 N LEU A 95 SHEET 5 A 6 ILE A 198 ASN A 203 1 O VAL A 201 N TYR A 169 SHEET 6 A 6 LYS A 228 GLU A 231 1 O LYS A 228 N LEU A 200 SHEET 1 B 3 THR B 126 TYR B 127 0 SHEET 2 B 3 GLU B 137 TYR B 143 -1 O VAL B 142 N TYR B 127 SHEET 3 B 3 SER B 130 VAL B 132 -1 N ILE B 131 O ALA B 138 SHEET 1 C 6 THR B 126 TYR B 127 0 SHEET 2 C 6 GLU B 137 TYR B 143 -1 O VAL B 142 N TYR B 127 SHEET 3 C 6 TYR B 92 GLY B 98 1 N VAL B 94 O TYR B 143 SHEET 4 C 6 ALA B 164 SER B 170 1 O VAL B 168 N LEU B 97 SHEET 5 C 6 ILE B 198 ASN B 203 1 O ASN B 203 N TYR B 169 SHEET 6 C 6 LYS B 228 GLU B 231 1 O LYS B 228 N LEU B 200 LINK CA CA A 1 O ARG A 252 1555 1555 2.63 LINK CA CA A 1 O HOH A 263 1555 1555 2.74 LINK CA CA A 1 O HOH A 269 1555 1555 2.77 LINK O HOH A 6 MG MG A 257 1555 1555 2.49 LINK O HOH A 17 MG MG A 257 1555 1555 2.38 LINK O HOH A 84 MG MG A 257 1555 1555 2.63 LINK OG SER A 105 MG MG A 257 1555 1555 2.31 LINK O3G GNP A 256 MG MG A 257 1555 1555 2.39 LINK O2B GNP A 256 MG MG A 257 1555 1555 2.42 LINK CA CA B 1 O HOH B 87 1555 1555 3.15 LINK CA CA B 1 O BARG B 252 1555 1555 3.03 LINK CA CA B 1 O AARG B 252 1555 1555 3.06 LINK CA CA B 1 O ARG B 255 1555 1555 2.67 LINK CA CA B 1 O HOH B 266 1555 1555 3.06 LINK O HOH B 14 MG MG B 257 1555 1555 2.71 LINK O HOH B 21 MG MG B 257 1555 1555 2.51 LINK OG SER B 105 MG MG B 257 1555 1555 2.36 LINK OE1 GLU B 147 MG MG B 257 1555 1555 2.30 LINK O3G GNP B 256 MG MG B 257 1555 1555 2.34 LINK O2B GNP B 256 MG MG B 257 1555 1555 2.39 CISPEP 1 GLY A 112 GLY A 113 0 -8.07 CISPEP 2 GLY A 113 VAL A 114 0 -2.87 CISPEP 3 VAL A 133 ASP A 134 0 -28.26 CISPEP 4 GLY B 113 VAL B 114 0 1.66 CISPEP 5 GLY B 124 HIS B 125 0 -5.12 CISPEP 6 VAL B 133 ASP B 134 0 -8.57 SITE 1 AC1 22 HOH A 6 HOH A 63 PRO A 100 GLY A 101 SITE 2 AC1 22 VAL A 102 GLY A 103 LYS A 104 SER A 105 SITE 3 AC1 22 ALA A 106 ASN A 203 LYS A 204 ASP A 206 SITE 4 AC1 22 LEU A 207 SER A 233 ALA A 234 ALA A 235 SITE 5 AC1 22 MG A 257 HOH A 266 HOH A 273 HOH B 75 SITE 6 AC1 22 ARG B 188 HOH B 258 SITE 1 AC2 6 HOH A 6 HOH A 17 HOH A 84 SER A 105 SITE 2 AC2 6 ASP A 144 GNP A 256 SITE 1 AC3 6 HOH A 74 GLU A 212 ARG A 252 ARG A 255 SITE 2 AC3 6 HOH A 263 HOH A 269 SITE 1 AC4 22 HOH B 14 HOH B 21 HOH B 38 HOH B 49 SITE 2 AC4 22 PRO B 100 GLY B 101 VAL B 102 GLY B 103 SITE 3 AC4 22 LYS B 104 SER B 105 ALA B 106 GLU B 147 SITE 4 AC4 22 ASN B 203 LYS B 204 ASP B 206 LEU B 207 SITE 5 AC4 22 SER B 233 ALA B 234 ALA B 235 MG B 257 SITE 6 AC4 22 HOH B 263 HOH B 268 SITE 1 AC5 5 HOH B 14 HOH B 21 SER B 105 GLU B 147 SITE 2 AC5 5 GNP B 256 SITE 1 AC6 5 ASP B 173 GLU B 212 ARG B 252 ARG B 255 SITE 2 AC6 5 HOH B 266 CRYST1 39.084 39.084 154.671 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025586 0.014772 0.000000 0.00000 SCALE2 0.000000 0.029544 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006465 0.00000