PDB Short entry for 3Q8L HEADER HYDROLASE/DNA 06-JAN-11 3Q8L TITLE CRYSTAL STRUCTURE OF HUMAN FLAP ENDONUCLEASE FEN1 (WT) IN COMPLEX WITH TITLE 2 SUBSTRATE 5'-FLAP DNA, SM3+, AND K+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAP ENDONUCLEASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FEN-1, DNASE IV, FLAP STRUCTURE-SPECIFIC ENDONUCLEASE 1, COMPND 5 MATURATION FACTOR 1, MF1, HFEN-1; COMPND 6 EC: 3.1.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'- COMPND 10 D(*AP*CP*TP*CP*TP*GP*CP*CP*TP*CP*AP*AP*GP*AP*CP*GP*GP*T)-3'); COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: TEMPLATE STRAND OF DNA SUBSTRATE; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (5'-D(*TP*TP*GP*AP*GP*GP*CP*AP*GP*AP*GP*T)-3'); COMPND 16 CHAIN: E; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: 5'-FLAP STRAND OF DNA SUBSTRATE; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: DNA (5'-D(*AP*CP*CP*GP*TP*CP*C)-3'); COMPND 21 CHAIN: F; COMPND 22 ENGINEERED: YES; COMPND 23 OTHER_DETAILS: 3'-FLAP STRAND OF DNA SUBSTRATE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FEN1, RAD2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET29B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHESIZED; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 OTHER_DETAILS: SYNTHESIZED; SOURCE 17 MOL_ID: 4; SOURCE 18 SYNTHETIC: YES; SOURCE 19 OTHER_DETAILS: SYNTHESIZED KEYWDS HELIX-3 TURN-HELIX, HYDROPHOBIC WEDGE, 3' FLAP BINDING SITE, KEYWDS 2 HYDROLASE-DNA COMPLEX, DNA REPAIR, REPLICATION, FLAP ENDONUCLEASE, KEYWDS 3 FEN, FEN1, DNA, NUCLEASE, 5' FLAP, SS-DSDNA JUNCTION, HELIX-2 TURN- KEYWDS 4 HELIX, H2TH, H3TH, DIVALENT CATION, METAL HELICAL GATEWAY, CAP, ACID KEYWDS 5 BLOCK, TWO METAL MECHANISM, UNPAIRED, 5' NUCLEASE, HUMAN, LONG PATCH KEYWDS 6 BASE EXCISION REPAIR EXPDTA X-RAY DIFFRACTION AUTHOR S.E.TSUTAKAWA,S.CLASSEN,B.R.CHAPADOS,A.ARVAI,D.L.FINGER,G.GUENTHER, AUTHOR 2 C.G.TOMLINSON,P.THOMPSON,A.H.SARKER,B.SHEN,P.K.COOPER,J.A.GRASBY, AUTHOR 3 J.A.TAINER REVDAT 2 13-SEP-23 3Q8L 1 REMARK SEQADV LINK REVDAT 1 27-APR-11 3Q8L 0 JRNL AUTH S.E.TSUTAKAWA,S.CLASSEN,B.R.CHAPADOS,A.S.ARVAI,L.D.FINGER, JRNL AUTH 2 G.GUENTHER,C.G.TOMLINSON,P.THOMPSON,A.H.SARKER,B.SHEN, JRNL AUTH 3 P.K.COOPER,J.A.GRASBY,J.A.TAINER JRNL TITL HUMAN FLAP ENDONUCLEASE STRUCTURES, DNA DOUBLE-BASE JRNL TITL 2 FLIPPING, AND A UNIFIED UNDERSTANDING OF THE FEN1 JRNL TITL 3 SUPERFAMILY. JRNL REF CELL(CAMBRIDGE,MASS.) V. 145 198 2011 JRNL REFN ISSN 0092-8674 JRNL PMID 21496641 JRNL DOI 10.1016/J.CELL.2011.03.004 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1460 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.4813 - 4.9740 0.99 2887 144 0.1358 0.1778 REMARK 3 2 4.9740 - 3.9573 1.00 2804 155 0.1198 0.1352 REMARK 3 3 3.9573 - 3.4598 1.00 2778 161 0.1459 0.1897 REMARK 3 4 3.4598 - 3.1447 1.00 2765 144 0.1724 0.2054 REMARK 3 5 3.1447 - 2.9200 1.00 2728 158 0.1768 0.2509 REMARK 3 6 2.9200 - 2.7483 1.00 2761 142 0.1988 0.2585 REMARK 3 7 2.7483 - 2.6109 1.00 2749 135 0.1931 0.2508 REMARK 3 8 2.6109 - 2.4975 1.00 2751 123 0.2306 0.2954 REMARK 3 9 2.4975 - 2.4015 1.00 2756 155 0.2628 0.3423 REMARK 3 10 2.4015 - 2.3190 1.00 2700 143 0.2734 0.3076 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 59.57 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.86730 REMARK 3 B22 (A**2) : 3.86730 REMARK 3 B33 (A**2) : -7.73460 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3700 REMARK 3 ANGLE : 1.030 5105 REMARK 3 CHIRALITY : 0.062 559 REMARK 3 PLANARITY : 0.004 541 REMARK 3 DIHEDRAL : 19.519 1468 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:116) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2369 -6.2190 5.4382 REMARK 3 T TENSOR REMARK 3 T11: 0.1617 T22: 0.1312 REMARK 3 T33: 0.1199 T12: 0.0399 REMARK 3 T13: -0.0359 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 0.2443 L22: 0.2503 REMARK 3 L33: 0.0704 L12: 0.0514 REMARK 3 L13: 0.1342 L23: 0.0242 REMARK 3 S TENSOR REMARK 3 S11: -0.0251 S12: -0.1052 S13: -0.0693 REMARK 3 S21: 0.2243 S22: 0.0604 S23: -0.1496 REMARK 3 S31: 0.0296 S32: 0.0380 S33: -0.0046 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 117:175) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7343 -4.1684 6.9345 REMARK 3 T TENSOR REMARK 3 T11: 0.2618 T22: 0.2237 REMARK 3 T33: 0.2317 T12: 0.0270 REMARK 3 T13: -0.0037 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.0996 L22: 0.2620 REMARK 3 L33: 0.2924 L12: 0.0730 REMARK 3 L13: 0.0791 L23: 0.1466 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: -0.0612 S13: -0.0754 REMARK 3 S21: 0.1555 S22: 0.0874 S23: -0.0639 REMARK 3 S31: 0.1459 S32: -0.0346 S33: -0.0314 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 176:274) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0407 -23.9097 -7.1543 REMARK 3 T TENSOR REMARK 3 T11: 0.4498 T22: 0.2887 REMARK 3 T33: 0.3256 T12: 0.0900 REMARK 3 T13: -0.0326 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 0.5856 L22: 0.2004 REMARK 3 L33: 0.5524 L12: -0.2696 REMARK 3 L13: 0.0228 L23: -0.2219 REMARK 3 S TENSOR REMARK 3 S11: -0.1442 S12: -0.1974 S13: -0.1336 REMARK 3 S21: 0.1124 S22: 0.1897 S23: -0.0362 REMARK 3 S31: 0.3016 S32: 0.1022 S33: -0.0208 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 275:342) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6488 6.8023 -0.4858 REMARK 3 T TENSOR REMARK 3 T11: 0.2903 T22: 0.2960 REMARK 3 T33: 0.2972 T12: -0.0101 REMARK 3 T13: -0.0155 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 0.1497 L22: 0.0743 REMARK 3 L33: 0.2070 L12: 0.0117 REMARK 3 L13: -0.0592 L23: 0.0350 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: -0.0360 S13: 0.0756 REMARK 3 S21: -0.0433 S22: -0.0117 S23: 0.0627 REMARK 3 S31: -0.0253 S32: -0.0416 S33: 0.0124 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN D AND RESID 1:9) REMARK 3 ORIGIN FOR THE GROUP (A): 34.2784 -32.2498 4.8789 REMARK 3 T TENSOR REMARK 3 T11: 0.9125 T22: 0.4588 REMARK 3 T33: 0.7674 T12: 0.3501 REMARK 3 T13: -0.0135 T23: -0.3146 REMARK 3 L TENSOR REMARK 3 L11: 0.0988 L22: 0.3525 REMARK 3 L33: 0.3356 L12: 0.1422 REMARK 3 L13: -0.1529 L23: -0.3431 REMARK 3 S TENSOR REMARK 3 S11: 0.0266 S12: -0.0777 S13: 0.0328 REMARK 3 S21: 0.0568 S22: 0.0149 S23: -0.2383 REMARK 3 S31: -0.0490 S32: 0.0030 S33: -0.0651 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN D AND RESID 10:13) REMARK 3 ORIGIN FOR THE GROUP (A): 34.8939 -9.1842 9.8077 REMARK 3 T TENSOR REMARK 3 T11: 0.5023 T22: 0.2668 REMARK 3 T33: 0.6582 T12: 0.2946 REMARK 3 T13: 0.0730 T23: -0.1139 REMARK 3 L TENSOR REMARK 3 L11: 0.0708 L22: 0.0850 REMARK 3 L33: 0.0776 L12: 0.0298 REMARK 3 L13: 0.0242 L23: -0.0127 REMARK 3 S TENSOR REMARK 3 S11: 0.0039 S12: 0.0052 S13: -0.0189 REMARK 3 S21: 0.0122 S22: 0.0022 S23: -0.0251 REMARK 3 S31: 0.0023 S32: 0.0061 S33: -0.0112 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN D AND RESID 14:18) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6129 10.4574 7.9784 REMARK 3 T TENSOR REMARK 3 T11: 0.2404 T22: 0.6854 REMARK 3 T33: 0.7201 T12: -0.0772 REMARK 3 T13: -0.0034 T23: 0.0611 REMARK 3 L TENSOR REMARK 3 L11: 0.6286 L22: 0.0073 REMARK 3 L33: 0.5370 L12: 0.0668 REMARK 3 L13: 0.5813 L23: 0.0612 REMARK 3 S TENSOR REMARK 3 S11: 0.0237 S12: 0.0048 S13: -0.0821 REMARK 3 S21: -0.0544 S22: -0.1035 S23: -0.4422 REMARK 3 S31: -0.0845 S32: 0.3852 S33: 0.0025 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN E) REMARK 3 ORIGIN FOR THE GROUP (A): 34.3962 -28.9558 5.2901 REMARK 3 T TENSOR REMARK 3 T11: 1.0558 T22: 0.5251 REMARK 3 T33: 0.9881 T12: 0.4471 REMARK 3 T13: -0.1257 T23: -0.2851 REMARK 3 L TENSOR REMARK 3 L11: 0.7064 L22: 0.1397 REMARK 3 L33: 0.4456 L12: -0.1009 REMARK 3 L13: -0.0609 L23: 0.0305 REMARK 3 S TENSOR REMARK 3 S11: 0.2542 S12: -0.0084 S13: 0.3661 REMARK 3 S21: -0.0317 S22: -0.0442 S23: -0.1140 REMARK 3 S31: 0.0098 S32: -0.0333 S33: -0.1538 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN F) REMARK 3 ORIGIN FOR THE GROUP (A): 40.7522 6.0592 12.6932 REMARK 3 T TENSOR REMARK 3 T11: 0.2837 T22: 0.8364 REMARK 3 T33: 0.3963 T12: 0.0678 REMARK 3 T13: -0.0080 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 3.0542 L22: 0.1561 REMARK 3 L33: 0.4473 L12: -0.3954 REMARK 3 L13: -1.0491 L23: 0.2330 REMARK 3 S TENSOR REMARK 3 S11: -0.1374 S12: -0.1599 S13: 0.2156 REMARK 3 S21: -0.0305 S22: -0.0310 S23: -0.1378 REMARK 3 S31: 0.0710 S32: 0.2713 S33: 0.0745 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q8L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063330. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.116 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29199 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.319 REMARK 200 RESOLUTION RANGE LOW (A) : 91.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.57800 REMARK 200 R SYM FOR SHELL (I) : 0.57800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3Q8K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% MPEG 2K, 20% KCL, 0.5 MM REMARK 280 SM2(SO4)3, 50 MM BIS-TRIS PH 7.0 AND 5% ETHYLENE GLYCOL, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.68333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.36667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 69.36667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.68333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 476 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 511 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 611 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG D 6 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC D 7 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT D 9 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT E 1 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT E 2 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG E 6 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG E 9 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DG E 9 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC F 7 O4' - C1' - N1 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 14 42.90 -142.54 REMARK 500 ALA A 117 30.02 -78.88 REMARK 500 SER A 157 -117.79 -134.96 REMARK 500 LYS A 200 130.42 -29.66 REMARK 500 LYS A 254 -44.98 79.66 REMARK 500 LEU A 275 30.88 -98.96 REMARK 500 CYS A 311 -65.22 -90.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SM A1003 SM REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 57 OE1 REMARK 620 2 GLU A 57 OE2 53.6 REMARK 620 3 GLU A 313 OE1 81.2 133.4 REMARK 620 4 HOH A 574 O 140.2 141.9 67.6 REMARK 620 5 HOH A 575 O 74.8 76.6 81.5 76.6 REMARK 620 6 HOH A 605 O 118.5 70.1 137.4 75.4 69.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SM A1004 SM REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 57 OE1 REMARK 620 2 GLU A 59 OE2 110.3 REMARK 620 3 GLU A 59 OE1 81.7 55.3 REMARK 620 4 GLU A 313 OE2 65.7 129.1 74.5 REMARK 620 5 HOH A 576 O 84.3 68.6 111.4 148.6 REMARK 620 6 HOH A 577 O 138.9 79.9 130.5 138.5 61.9 REMARK 620 7 HOH A 658 O 148.0 74.5 75.7 86.4 124.9 72.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SM A1001 SM REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 86 OD1 REMARK 620 2 ASP A 86 OD2 41.6 REMARK 620 3 HOH A 361 O 89.1 110.4 REMARK 620 4 HOH A 376 O 129.8 103.7 69.0 REMARK 620 5 HOH A 422 O 153.7 152.3 95.3 75.4 REMARK 620 6 HOH A 683 O 74.2 48.0 79.9 58.2 132.1 REMARK 620 7 SO4 A1201 O2 143.4 103.5 120.0 55.6 52.6 88.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SM A1002 SM REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 160 OE2 REMARK 620 2 GLU A 160 OE1 49.5 REMARK 620 3 ASP A 179 OD2 125.8 76.9 REMARK 620 4 ASP A 181 OD2 116.0 124.5 85.1 REMARK 620 5 ASP A 181 OD1 76.4 70.2 78.3 54.8 REMARK 620 6 HOH A 356 O 75.0 122.3 158.6 90.2 115.6 REMARK 620 7 HOH A 379 O 109.9 73.0 50.6 129.7 122.1 121.7 REMARK 620 8 HOH A 422 O 68.0 76.5 111.8 156.7 141.9 68.2 61.8 REMARK 620 9 HOH E 277 O 146.5 152.6 85.7 73.8 126.9 72.9 79.7 91.0 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 238 O REMARK 620 2 HOH A 362 O 101.7 REMARK 620 3 HOH A 653 O 107.2 97.4 REMARK 620 4 DT D 5 OP1 83.3 150.5 108.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SM A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SM A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SM A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SM A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3Q8K RELATED DB: PDB REMARK 900 RELATED ID: 3Q8M RELATED DB: PDB DBREF 3Q8L A 2 336 UNP P39748 FEN1_HUMAN 2 336 DBREF 3Q8L D 1 18 PDB 3Q8L 3Q8L 1 18 DBREF 3Q8L E 1 12 PDB 3Q8L 3Q8L 1 12 DBREF 3Q8L F 1 7 PDB 3Q8L 3Q8L 1 7 SEQADV 3Q8L LEU A 337 UNP P39748 EXPRESSION TAG SEQADV 3Q8L GLU A 338 UNP P39748 EXPRESSION TAG SEQADV 3Q8L VAL A 339 UNP P39748 EXPRESSION TAG SEQADV 3Q8L LEU A 340 UNP P39748 EXPRESSION TAG SEQADV 3Q8L PHE A 341 UNP P39748 EXPRESSION TAG SEQADV 3Q8L GLN A 342 UNP P39748 EXPRESSION TAG SEQRES 1 A 341 GLY ILE GLN GLY LEU ALA LYS LEU ILE ALA ASP VAL ALA SEQRES 2 A 341 PRO SER ALA ILE ARG GLU ASN ASP ILE LYS SER TYR PHE SEQRES 3 A 341 GLY ARG LYS VAL ALA ILE ASP ALA SER MET SER ILE TYR SEQRES 4 A 341 GLN PHE LEU ILE ALA VAL ARG GLN GLY GLY ASP VAL LEU SEQRES 5 A 341 GLN ASN GLU GLU GLY GLU THR THR SER HIS LEU MET GLY SEQRES 6 A 341 MET PHE TYR ARG THR ILE ARG MET MET GLU ASN GLY ILE SEQRES 7 A 341 LYS PRO VAL TYR VAL PHE ASP GLY LYS PRO PRO GLN LEU SEQRES 8 A 341 LYS SER GLY GLU LEU ALA LYS ARG SER GLU ARG ARG ALA SEQRES 9 A 341 GLU ALA GLU LYS GLN LEU GLN GLN ALA GLN ALA ALA GLY SEQRES 10 A 341 ALA GLU GLN GLU VAL GLU LYS PHE THR LYS ARG LEU VAL SEQRES 11 A 341 LYS VAL THR LYS GLN HIS ASN ASP GLU CYS LYS HIS LEU SEQRES 12 A 341 LEU SER LEU MET GLY ILE PRO TYR LEU ASP ALA PRO SER SEQRES 13 A 341 GLU ALA GLU ALA SER CYS ALA ALA LEU VAL LYS ALA GLY SEQRES 14 A 341 LYS VAL TYR ALA ALA ALA THR GLU ASP MET ASP CYS LEU SEQRES 15 A 341 THR PHE GLY SER PRO VAL LEU MET ARG HIS LEU THR ALA SEQRES 16 A 341 SER GLU ALA LYS LYS LEU PRO ILE GLN GLU PHE HIS LEU SEQRES 17 A 341 SER ARG ILE LEU GLN GLU LEU GLY LEU ASN GLN GLU GLN SEQRES 18 A 341 PHE VAL ASP LEU CYS ILE LEU LEU GLY SER ASP TYR CYS SEQRES 19 A 341 GLU SER ILE ARG GLY ILE GLY PRO LYS ARG ALA VAL ASP SEQRES 20 A 341 LEU ILE GLN LYS HIS LYS SER ILE GLU GLU ILE VAL ARG SEQRES 21 A 341 ARG LEU ASP PRO ASN LYS TYR PRO VAL PRO GLU ASN TRP SEQRES 22 A 341 LEU HIS LYS GLU ALA HIS GLN LEU PHE LEU GLU PRO GLU SEQRES 23 A 341 VAL LEU ASP PRO GLU SER VAL GLU LEU LYS TRP SER GLU SEQRES 24 A 341 PRO ASN GLU GLU GLU LEU ILE LYS PHE MET CYS GLY GLU SEQRES 25 A 341 LYS GLN PHE SER GLU GLU ARG ILE ARG SER GLY VAL LYS SEQRES 26 A 341 ARG LEU SER LYS SER ARG GLN GLY SER THR LEU GLU VAL SEQRES 27 A 341 LEU PHE GLN SEQRES 1 D 18 DA DC DT DC DT DG DC DC DT DC DA DA DG SEQRES 2 D 18 DA DC DG DG DT SEQRES 1 E 12 DT DT DG DA DG DG DC DA DG DA DG DT SEQRES 1 F 7 DA DC DC DG DT DC DC HET SM A1001 1 HET SM A1002 1 HET SM A1003 1 HET SM A1004 1 HET K A1101 1 HET SO4 A1201 5 HET SO4 A1202 5 HETNAM SM SAMARIUM (III) ION HETNAM K POTASSIUM ION HETNAM SO4 SULFATE ION FORMUL 5 SM 4(SM 3+) FORMUL 9 K K 1+ FORMUL 10 SO4 2(O4 S 2-) FORMUL 12 HOH *402(H2 O) HELIX 1 1 GLY A 5 ALA A 14 1 10 HELIX 2 2 ASP A 22 PHE A 27 5 6 HELIX 3 3 ALA A 35 VAL A 46 1 12 HELIX 4 4 THR A 61 ASN A 77 1 17 HELIX 5 5 PRO A 90 LEU A 92 5 3 HELIX 6 6 LYS A 93 ALA A 117 1 25 HELIX 7 7 ALA A 119 VAL A 131 1 13 HELIX 8 8 THR A 134 GLY A 149 1 16 HELIX 9 9 GLU A 158 ALA A 169 1 12 HELIX 10 10 MET A 180 PHE A 185 1 6 HELIX 11 11 LEU A 209 GLY A 217 1 9 HELIX 12 12 ASN A 219 GLY A 231 1 13 HELIX 13 13 GLY A 242 LYS A 254 1 13 HELIX 14 14 SER A 255 LEU A 263 1 9 HELIX 15 15 LEU A 275 GLU A 285 1 11 HELIX 16 16 ASN A 302 CYS A 311 1 10 HELIX 17 17 SER A 317 THR A 336 1 20 SHEET 1 A 7 ILE A 18 GLU A 20 0 SHEET 2 A 7 GLN A 205 HIS A 208 -1 O GLU A 206 N ARG A 19 SHEET 3 A 7 VAL A 189 ARG A 192 -1 N LEU A 190 O PHE A 207 SHEET 4 A 7 ALA A 174 ALA A 176 1 N ALA A 175 O MET A 191 SHEET 5 A 7 LYS A 30 ASP A 34 1 N ALA A 32 O ALA A 176 SHEET 6 A 7 LYS A 80 PHE A 85 1 O VAL A 84 N ILE A 33 SHEET 7 A 7 TYR A 152 ASP A 154 1 O LEU A 153 N PHE A 85 SHEET 1 B 2 ARG A 47 GLN A 48 0 SHEET 2 B 2 ASP A 51 VAL A 52 -1 O ASP A 51 N GLN A 48 LINK OE1 GLU A 57 SM SM A1003 1555 1555 2.37 LINK OE2 GLU A 57 SM SM A1003 1555 1555 2.42 LINK OE1 GLU A 57 SM SM A1004 1555 1555 2.33 LINK OE2 GLU A 59 SM SM A1004 1555 1555 2.32 LINK OE1 GLU A 59 SM SM A1004 1555 1555 2.38 LINK OD1 ASP A 86 SM SM A1001 1555 1555 2.96 LINK OD2 ASP A 86 SM SM A1001 1555 1555 3.17 LINK OE2 GLU A 160 SM SM A1002 1555 1555 2.62 LINK OE1 GLU A 160 SM SM A1002 1555 1555 2.68 LINK OD2 ASP A 179 SM SM A1002 1555 1555 2.29 LINK OD2 ASP A 181 SM SM A1002 1555 1555 2.29 LINK OD1 ASP A 181 SM SM A1002 1555 1555 2.39 LINK O ILE A 238 K K A1101 1555 1555 3.44 LINK OE1 GLU A 313 SM SM A1003 1555 1555 2.46 LINK OE2 GLU A 313 SM SM A1004 1555 1555 2.36 LINK O HOH A 356 SM SM A1002 1555 1555 2.30 LINK O HOH A 361 SM SM A1001 1555 1555 2.31 LINK O HOH A 362 K K A1101 1555 1555 3.18 LINK O HOH A 376 SM SM A1001 1555 1555 2.30 LINK O HOH A 379 SM SM A1002 1555 1555 2.92 LINK O HOH A 422 SM SM A1001 1555 1555 2.49 LINK O HOH A 422 SM SM A1002 1555 1555 2.48 LINK O HOH A 574 SM SM A1003 1555 1555 2.88 LINK O HOH A 575 SM SM A1003 1555 1555 2.50 LINK O HOH A 576 SM SM A1004 1555 1555 2.86 LINK O HOH A 577 SM SM A1004 1555 1555 2.48 LINK O HOH A 605 SM SM A1003 1555 1555 2.92 LINK O HOH A 653 K K A1101 1555 1555 3.47 LINK O HOH A 658 SM SM A1004 1555 1555 2.80 LINK O HOH A 683 SM SM A1001 1555 1555 2.74 LINK SM SM A1001 O2 SO4 A1201 1555 1555 2.50 LINK SM SM A1002 O HOH E 277 1555 1555 3.05 LINK K K A1101 OP1 DT D 5 1555 1555 2.93 SITE 1 AC1 7 ASP A 86 GLU A 158 HOH A 361 HOH A 376 SITE 2 AC1 7 HOH A 422 HOH A 683 SO4 A1201 SITE 1 AC2 8 GLU A 160 ASP A 179 ASP A 181 HOH A 356 SITE 2 AC2 8 HOH A 379 HOH A 422 SO4 A1201 HOH E 277 SITE 1 AC3 7 GLU A 57 GLU A 285 GLU A 313 GLN A 342 SITE 2 AC3 7 HOH A 574 HOH A 575 HOH A 605 SITE 1 AC4 7 GLU A 57 GLU A 59 GLU A 313 GLN A 342 SITE 2 AC4 7 HOH A 576 HOH A 577 HOH A 658 SITE 1 AC5 4 SER A 237 ILE A 238 ILE A 241 DT D 5 SITE 1 AC6 10 LYS A 93 ARG A 100 ASP A 233 HOH A 376 SITE 2 AC6 10 HOH A 379 HOH A 422 SM A1001 SM A1002 SITE 3 AC6 10 DT E 1 HOH E 277 SITE 1 AC7 4 GLU A 198 HOH A 404 HOH A 407 DG D 16 CRYST1 105.140 105.140 104.050 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009511 0.005491 0.000000 0.00000 SCALE2 0.000000 0.010983 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009611 0.00000