PDB Short entry for 3QT4 HEADER HYDROLASE 22-FEB-11 3QT4 TITLE STRUCTURE OF DIGESTIVE PROCATHEPSIN L 3 OF TENEBRIO MOLITOR LARVAL TITLE 2 MIDGUT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATHEPSIN-L-LIKE MIDGUT CYSTEINE PROTEINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.22.15; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TENEBRIO MOLITOR; SOURCE 3 ORGANISM_COMMON: YELLOW MEALWORM BEETLE; SOURCE 4 ORGANISM_TAXID: 7067; SOURCE 5 GENE: PCAL3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B (D3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PAE KEYWDS HYDROLASE, CYSTEINE PROTEINASE, ZYMOGEN, INTRAMOLECULAR DISSULPHIDE KEYWDS 2 BONDS, INSECT LARVAL MIDGUT EXPDTA X-RAY DIFFRACTION AUTHOR D.BETON,C.R.GUZZO,W.R.TERRA,C.S.FARAH REVDAT 5 13-SEP-23 3QT4 1 REMARK SEQADV REVDAT 4 08-NOV-17 3QT4 1 REMARK REVDAT 3 22-AUG-12 3QT4 1 JRNL REVDAT 2 20-JUN-12 3QT4 1 JRNL REVDAT 1 22-FEB-12 3QT4 0 JRNL AUTH D.BETON,C.R.GUZZO,A.F.RIBEIRO,C.S.FARAH,W.R.TERRA JRNL TITL THE 3D STRUCTURE AND FUNCTION OF DIGESTIVE CATHEPSIN L-LIKE JRNL TITL 2 PROTEINASES OF TENEBRIO MOLITOR LARVAL MIDGUT. JRNL REF INSECT BIOCHEM.MOL.BIOL. V. 42 655 2012 JRNL REFN ISSN 0965-1748 JRNL PMID 22659439 JRNL DOI 10.1016/J.IBMB.2012.04.010 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 19255 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1037 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1317 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.1600 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2362 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 134 REMARK 3 SOLVENT ATOMS : 262 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.697 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2639 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3557 ; 1.282 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 325 ; 5.686 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;32.283 ;24.769 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 407 ;14.242 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.749 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 342 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2013 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1868 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1843 ; 0.324 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 435 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 85 ; 0.191 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.119 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1566 ; 0.636 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2466 ; 1.112 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1222 ; 1.578 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1084 ; 2.181 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QT4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000064069. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.42 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20295 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.21500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2O6X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, 0.2 M AMMONIUM REMARK 280 DIHYDROGEN PHOSPHATE, PH 5.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 28.81700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.66100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 28.81700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.66100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 GLY A -7 REMARK 465 SER A -6 REMARK 465 ASP A -5 REMARK 465 LEU A -4 REMARK 465 GLU A -3 REMARK 465 ILE A -2 REMARK 465 CYS A -1 REMARK 465 SER A 0 REMARK 465 LEU A 1 REMARK 465 PRO A 2 REMARK 465 LYS A 81 REMARK 465 PRO A 82 REMARK 465 LYS A 83 REMARK 465 HIS A 84 REMARK 465 PRO A 85 REMARK 465 GLU A 86 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 177 -90.77 -123.86 REMARK 500 ASN A 258 -4.34 -141.64 REMARK 500 ASN A 270 55.60 36.00 REMARK 500 TYR A 297 64.75 -115.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 411 REMARK 610 PG4 A 412 REMARK 610 PG4 A 413 REMARK 610 PG4 A 414 REMARK 610 PG4 A 415 REMARK 610 PG4 A 416 REMARK 610 PG4 A 417 REMARK 610 PG6 A 418 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG6 A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG6 A 419 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QJ3 RELATED DB: PDB REMARK 900 PROCATHEPSIN L 2 FROM TENEBRIO MOLITOR LARVAL MIDGUT DBREF 3QT4 A 1 312 UNP Q7YXL2 Q7YXL2_TENMO 19 330 SEQADV 3QT4 MET A -16 UNP Q7YXL2 EXPRESSION TAG SEQADV 3QT4 HIS A -15 UNP Q7YXL2 EXPRESSION TAG SEQADV 3QT4 HIS A -14 UNP Q7YXL2 EXPRESSION TAG SEQADV 3QT4 HIS A -13 UNP Q7YXL2 EXPRESSION TAG SEQADV 3QT4 HIS A -12 UNP Q7YXL2 EXPRESSION TAG SEQADV 3QT4 HIS A -11 UNP Q7YXL2 EXPRESSION TAG SEQADV 3QT4 HIS A -10 UNP Q7YXL2 EXPRESSION TAG SEQADV 3QT4 LEU A -9 UNP Q7YXL2 EXPRESSION TAG SEQADV 3QT4 GLU A -8 UNP Q7YXL2 EXPRESSION TAG SEQADV 3QT4 GLY A -7 UNP Q7YXL2 EXPRESSION TAG SEQADV 3QT4 SER A -6 UNP Q7YXL2 EXPRESSION TAG SEQADV 3QT4 ASP A -5 UNP Q7YXL2 EXPRESSION TAG SEQADV 3QT4 LEU A -4 UNP Q7YXL2 EXPRESSION TAG SEQADV 3QT4 GLU A -3 UNP Q7YXL2 EXPRESSION TAG SEQADV 3QT4 ILE A -2 UNP Q7YXL2 EXPRESSION TAG SEQADV 3QT4 CYS A -1 UNP Q7YXL2 EXPRESSION TAG SEQADV 3QT4 SER A 0 UNP Q7YXL2 EXPRESSION TAG SEQADV 3QT4 SER A 122 UNP Q7YXL2 CYS 140 ENGINEERED MUTATION SEQRES 1 A 329 MET HIS HIS HIS HIS HIS HIS LEU GLU GLY SER ASP LEU SEQRES 2 A 329 GLU ILE CYS SER LEU PRO LYS SER LEU PHE GLN GLU GLN SEQRES 3 A 329 TRP SER GLN PHE LYS LEU THR HIS LYS LYS SER TYR SER SEQRES 4 A 329 SER PRO ILE GLU GLU ILE ARG ARG GLN LEU ILE PHE LYS SEQRES 5 A 329 ASP ASN VAL ALA LYS ILE ALA GLU HIS ASN ALA LYS PHE SEQRES 6 A 329 GLU LYS GLY GLU VAL THR TYR SER LYS ALA MET ASN GLN SEQRES 7 A 329 PHE GLY ASP MET SER LYS GLU GLU PHE LEU ALA TYR VAL SEQRES 8 A 329 ASN ARG GLY LYS ALA GLN LYS PRO LYS HIS PRO GLU ASN SEQRES 9 A 329 LEU ARG MET PRO TYR VAL SER SER LYS LYS PRO LEU ALA SEQRES 10 A 329 ALA SER VAL ASP TRP ARG SER ASN ALA VAL SER GLU VAL SEQRES 11 A 329 LYS ASP GLN GLY GLN CYS GLY SER SER TRP SER PHE SER SEQRES 12 A 329 THR THR GLY ALA VAL GLU GLY GLN LEU ALA LEU GLN ARG SEQRES 13 A 329 GLY ARG LEU THR SER LEU SER GLU GLN ASN LEU ILE ASP SEQRES 14 A 329 CYS SER SER SER TYR GLY ASN ALA GLY CYS ASP GLY GLY SEQRES 15 A 329 TRP MET ASP SER ALA PHE SER TYR ILE HIS ASP TYR GLY SEQRES 16 A 329 ILE MET SER GLU SER ALA TYR PRO TYR GLU ALA GLN GLY SEQRES 17 A 329 ASP TYR CYS ARG PHE ASP SER SER GLN SER VAL THR THR SEQRES 18 A 329 LEU SER GLY TYR TYR ASP LEU PRO SER GLY ASP GLU ASN SEQRES 19 A 329 SER LEU ALA ASP ALA VAL GLY GLN ALA GLY PRO VAL ALA SEQRES 20 A 329 VAL ALA ILE ASP ALA THR ASP GLU LEU GLN PHE TYR SER SEQRES 21 A 329 GLY GLY LEU PHE TYR ASP GLN THR CYS ASN GLN SER ASP SEQRES 22 A 329 LEU ASN HIS GLY VAL LEU VAL VAL GLY TYR GLY SER ASP SEQRES 23 A 329 ASN GLY GLN ASP TYR TRP ILE LEU LYS ASN SER TRP GLY SEQRES 24 A 329 SER GLY TRP GLY GLU SER GLY TYR TRP ARG GLN VAL ARG SEQRES 25 A 329 ASN TYR GLY ASN ASN CYS GLY ILE ALA THR ALA ALA SER SEQRES 26 A 329 TYR PRO ALA LEU HET PO4 A 401 5 HET PO4 A 402 5 HET PO4 A 403 5 HET PO4 A 404 5 HET PO4 A 405 5 HET PO4 A 406 5 HET PO4 A 407 5 HET PO4 A 408 5 HET PO4 A 409 5 HET PO4 A 410 5 HET PG4 A 411 10 HET PG4 A 412 10 HET PG4 A 413 6 HET PG4 A 414 7 HET PG4 A 415 10 HET PG4 A 416 5 HET PG4 A 417 6 HET PG6 A 418 12 HET PG6 A 419 18 HETNAM PO4 PHOSPHATE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PG6 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]- HETNAM 2 PG6 ETHOXY}-ETHANE FORMUL 2 PO4 10(O4 P 3-) FORMUL 12 PG4 7(C8 H18 O5) FORMUL 19 PG6 2(C12 H26 O6) FORMUL 21 HOH *262(H2 O) HELIX 1 1 SER A 4 HIS A 17 1 14 HELIX 2 2 SER A 23 LYS A 50 1 28 HELIX 3 3 ASN A 60 MET A 65 5 6 HELIX 4 4 SER A 66 GLY A 77 1 12 HELIX 5 5 SER A 121 GLY A 140 1 20 HELIX 6 6 SER A 146 SER A 154 1 9 HELIX 7 7 SER A 155 GLY A 158 5 4 HELIX 8 8 ALA A 160 GLY A 164 5 5 HELIX 9 9 TRP A 166 TYR A 177 1 12 HELIX 10 10 ASP A 197 SER A 201 5 5 HELIX 11 11 ASP A 215 ALA A 226 1 12 HELIX 12 12 THR A 236 GLN A 240 5 5 HELIX 13 13 ASN A 299 ILE A 303 5 5 SHEET 1 A 6 TYR A 55 LYS A 57 0 SHEET 2 A 6 TYR A 242 PHE A 247 -1 O GLY A 244 N SER A 56 SHEET 3 A 6 TYR A 290 VAL A 294 1 O ARG A 292 N PHE A 247 SHEET 4 A 6 GLN A 272 LYS A 278 -1 N LEU A 277 O TRP A 291 SHEET 5 A 6 HIS A 259 ASP A 269 -1 N ASP A 269 O GLN A 272 SHEET 6 A 6 VAL A 103 ASP A 104 -1 N VAL A 103 O TYR A 266 SHEET 1 B 6 TYR A 55 LYS A 57 0 SHEET 2 B 6 TYR A 242 PHE A 247 -1 O GLY A 244 N SER A 56 SHEET 3 B 6 TYR A 290 VAL A 294 1 O ARG A 292 N PHE A 247 SHEET 4 B 6 GLN A 272 LYS A 278 -1 N LEU A 277 O TRP A 291 SHEET 5 B 6 HIS A 259 ASP A 269 -1 N ASP A 269 O GLN A 272 SHEET 6 B 6 VAL A 229 ILE A 233 -1 N VAL A 229 O VAL A 263 SHEET 1 C 3 ARG A 89 PRO A 91 0 SHEET 2 C 3 GLY A 207 ASP A 210 1 O TYR A 208 N MET A 90 SHEET 3 C 3 SER A 308 ALA A 311 -1 O ALA A 311 N GLY A 207 SSBOND 1 CYS A 119 CYS A 162 1555 1555 2.03 SSBOND 2 CYS A 153 CYS A 194 1555 1555 2.06 SSBOND 3 CYS A 252 CYS A 301 1555 1555 2.04 SITE 1 AC1 11 TYR A 73 VAL A 74 GLY A 77 GLN A 116 SITE 2 AC1 11 GLY A 120 SER A 121 SER A 122 ASN A 258 SITE 3 AC1 11 HIS A 259 HOH A 504 HOH A 662 SITE 1 AC2 4 VAL A 103 ASP A 104 TRP A 105 HOH A 511 SITE 1 AC3 6 ARG A 76 CYS A 162 GLN A 190 GLY A 191 SITE 2 AC3 6 HOH A 557 HOH A 750 SITE 1 AC4 2 PHE A 48 GLU A 49 SITE 1 AC5 7 HIS A 44 LYS A 47 TYR A 55 GLU A 238 SITE 2 AC5 7 GLN A 250 HOH A 512 HOH A 758 SITE 1 AC6 7 THR A 16 HIS A 17 LYS A 18 GLN A 61 SITE 2 AC6 7 HOH A 602 HOH A 681 HOH A 687 SITE 1 AC7 3 LYS A 18 HOH A 729 HOH A 753 SITE 1 AC8 3 TYR A 157 ASP A 176 HOH A 627 SITE 1 AC9 5 GLY A 191 ASP A 192 TYR A 193 HOH A 589 SITE 2 AC9 5 HOH A 703 SITE 1 BC1 5 TYR A 21 SER A 22 GLU A 26 ARG A 30 SITE 2 BC1 5 PG6 A 419 SITE 1 BC2 7 SER A 213 GLY A 214 TYR A 248 GLN A 272 SITE 2 BC2 7 TYR A 297 HOH A 608 HOH A 620 SITE 1 BC3 6 SER A 66 GLU A 68 GLU A 69 ALA A 72 SITE 2 BC3 6 LYS A 97 HOH A 571 SITE 1 BC4 10 GLY A 77 LYS A 78 ALA A 79 SER A 122 SITE 2 BC4 10 TRP A 123 TRP A 166 LEU A 257 ASN A 258 SITE 3 BC4 10 GLY A 260 HOH A 504 SITE 1 BC5 3 ASP A 115 GLY A 117 TYR A 187 SITE 1 BC6 9 GLN A 12 PHE A 13 HIS A 17 MET A 59 SITE 2 BC6 9 ASN A 60 HOH A 569 HOH A 580 HOH A 603 SITE 3 BC6 9 HOH A 653 SITE 1 BC7 1 GLN A 200 SITE 1 BC8 7 PHE A 6 LYS A 35 VAL A 38 ALA A 39 SITE 2 BC8 7 ALA A 42 HOH A 572 HOH A 612 SITE 1 BC9 8 LYS A 3 SER A 4 GLU A 8 ASP A 176 SITE 2 BC9 8 TYR A 177 ASP A 197 SER A 198 HOH A 527 SITE 1 CC1 10 LYS A 19 ARG A 30 GLN A 61 ASP A 64 SITE 2 CC1 10 MET A 65 GLU A 69 TYR A 73 GLY A 117 SITE 3 CC1 10 GLN A 118 PO4 A 410 CRYST1 57.634 89.322 70.076 90.00 92.50 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017351 0.000000 0.000758 0.00000 SCALE2 0.000000 0.011195 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014284 0.00000