PDB Short entry for 3QVL HEADER ISOMERASE 25-FEB-11 3QVL TITLE ALLANTOIN RACEMASE FROM KLEBSIELLA PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE HYDANTOIN RACEMASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 272620; SOURCE 4 STRAIN: ATCC 700721 / MGH 78578; SOURCE 5 GENE: HPXA, KPN78578_17580, KPN_01788; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.B.FRENCH,D.B.NEAU,S.E.EALICK REVDAT 5 21-FEB-24 3QVL 1 REMARK SEQADV REVDAT 4 08-NOV-17 3QVL 1 REMARK REVDAT 3 06-JUL-11 3QVL 1 JRNL REVDAT 2 22-JUN-11 3QVL 1 JRNL REVDAT 1 04-MAY-11 3QVL 0 JRNL AUTH J.B.FRENCH,D.B.NEAU,S.E.EALICK JRNL TITL CHARACTERIZATION OF THE STRUCTURE AND FUNCTION OF KLEBSIELLA JRNL TITL 2 PNEUMONIAE ALLANTOIN RACEMASE. JRNL REF J.MOL.BIOL. V. 410 447 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21616082 JRNL DOI 10.1016/J.JMB.2011.05.016 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 108.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 52474 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2675 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3559 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3490 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 443 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.42000 REMARK 3 B12 (A**2) : -0.14000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.458 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3571 ; 0.005 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4859 ; 0.927 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 490 ; 4.574 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;27.887 ;23.559 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 553 ;13.136 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;15.145 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 597 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2646 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2440 ; 0.171 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3873 ; 0.326 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1131 ; 0.444 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 986 ; 0.805 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3QVL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064158. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : CRYO-COOLED SI(111) REMARK 200 DOUBLECRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52509 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 108.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 15.30 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : 0.30100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 0.1 M SODIUM ACETATE PH REMARK 280 3.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.47700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.47700 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.47700 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 63.47700 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 63.47700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 63.47700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -146.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 124.95500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 62.47750 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 108.21420 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 62.47750 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 108.21420 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -63.47700 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 124.95500 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -63.47700 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -63.47700 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -152.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 253 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 289 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 448 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 286 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 297 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 357 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 417 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 3 OG REMARK 470 ARG A 41 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 HIS A 129 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 133 CG CD OE1 NE2 REMARK 470 GLN A 138 CG CD OE1 NE2 REMARK 470 ASP A 147 CG OD1 OD2 REMARK 470 LYS A 173 CD CE NZ REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 470 ARG A 196 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 199 CG CD NE CZ NH1 NH2 REMARK 470 SER B 3 OG REMARK 470 ARG B 41 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 HIS B 129 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 133 CG CD OE1 NE2 REMARK 470 GLN B 138 CG CD OE1 NE2 REMARK 470 ASP B 147 CG OD1 OD2 REMARK 470 LYS B 173 CD CE NZ REMARK 470 GLN B 193 CG CD OE1 NE2 REMARK 470 ARG B 196 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 199 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 78 42.34 -97.76 REMARK 500 ALA A 78 42.53 -97.76 REMARK 500 THR A 119 -63.58 -96.29 REMARK 500 ALA B 78 47.54 -94.58 REMARK 500 THR B 119 -61.35 -94.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5HY A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5HY B 1 DBREF 3QVL A 3 247 UNP A6T9E8 A6T9E8_KLEP7 3 247 DBREF 3QVL B 3 247 UNP A6T9E8 A6T9E8_KLEP7 3 247 SEQADV 3QVL SER A 79 UNP A6T9E8 CYS 79 CONFLICT SEQADV 3QVL SER A 184 UNP A6T9E8 CYS 184 CONFLICT SEQADV 3QVL GLN A 193 UNP A6T9E8 GLU 193 CONFLICT SEQADV 3QVL SER B 79 UNP A6T9E8 CYS 79 CONFLICT SEQADV 3QVL SER B 184 UNP A6T9E8 CYS 184 CONFLICT SEQADV 3QVL GLN B 193 UNP A6T9E8 GLU 193 CONFLICT SEQRES 1 A 245 SER VAL ARG ILE GLN VAL ILE ASN PRO ASN THR SER LEU SEQRES 2 A 245 ALA MET THR GLU THR ILE GLY ALA ALA ALA ARG ALA VAL SEQRES 3 A 245 ALA ALA PRO GLY THR GLU ILE LEU ALA VAL CYS PRO ARG SEQRES 4 A 245 ALA GLY VAL PRO SER ILE GLU GLY HIS PHE ASP GLU ALA SEQRES 5 A 245 ILE ALA ALA VAL GLY VAL LEU GLU GLN ILE ARG ALA GLY SEQRES 6 A 245 ARG GLU GLN GLY VAL ASP GLY HIS VAL ILE ALA SER PHE SEQRES 7 A 245 GLY ASP PRO GLY LEU LEU ALA ALA ARG GLU LEU ALA GLN SEQRES 8 A 245 GLY PRO VAL ILE GLY ILE ALA GLU ALA ALA MET HIS MET SEQRES 9 A 245 ALA THR MET VAL ALA THR ARG PHE SER ILE VAL THR THR SEQRES 10 A 245 LEU PRO ARG THR LEU ILE ILE ALA ARG HIS LEU LEU HIS SEQRES 11 A 245 GLN TYR GLY PHE HIS GLN HIS CYS ALA ALA LEU HIS ALA SEQRES 12 A 245 ILE ASP LEU PRO VAL LEU ALA LEU GLU ASP GLY SER GLY SEQRES 13 A 245 LEU ALA GLN GLU LYS VAL ARG GLU ARG CYS ILE ARG ALA SEQRES 14 A 245 LEU LYS GLU ASP GLY SER GLY ALA ILE VAL LEU GLY SER SEQRES 15 A 245 GLY GLY MET ALA THR LEU ALA GLN GLN LEU THR ARG GLU SEQRES 16 A 245 LEU ARG VAL PRO VAL ILE ASP GLY VAL SER ALA ALA VAL SEQRES 17 A 245 LYS MET VAL GLU SER LEU VAL ALA LEU GLY LEU ALA THR SEQRES 18 A 245 SER LYS HIS GLY ASP LEU ALA PHE PRO GLU LYS LYS ALA SEQRES 19 A 245 LEU SER GLY GLN PHE GLN SER LEU ASN PRO PHE SEQRES 1 B 245 SER VAL ARG ILE GLN VAL ILE ASN PRO ASN THR SER LEU SEQRES 2 B 245 ALA MET THR GLU THR ILE GLY ALA ALA ALA ARG ALA VAL SEQRES 3 B 245 ALA ALA PRO GLY THR GLU ILE LEU ALA VAL CYS PRO ARG SEQRES 4 B 245 ALA GLY VAL PRO SER ILE GLU GLY HIS PHE ASP GLU ALA SEQRES 5 B 245 ILE ALA ALA VAL GLY VAL LEU GLU GLN ILE ARG ALA GLY SEQRES 6 B 245 ARG GLU GLN GLY VAL ASP GLY HIS VAL ILE ALA SER PHE SEQRES 7 B 245 GLY ASP PRO GLY LEU LEU ALA ALA ARG GLU LEU ALA GLN SEQRES 8 B 245 GLY PRO VAL ILE GLY ILE ALA GLU ALA ALA MET HIS MET SEQRES 9 B 245 ALA THR MET VAL ALA THR ARG PHE SER ILE VAL THR THR SEQRES 10 B 245 LEU PRO ARG THR LEU ILE ILE ALA ARG HIS LEU LEU HIS SEQRES 11 B 245 GLN TYR GLY PHE HIS GLN HIS CYS ALA ALA LEU HIS ALA SEQRES 12 B 245 ILE ASP LEU PRO VAL LEU ALA LEU GLU ASP GLY SER GLY SEQRES 13 B 245 LEU ALA GLN GLU LYS VAL ARG GLU ARG CYS ILE ARG ALA SEQRES 14 B 245 LEU LYS GLU ASP GLY SER GLY ALA ILE VAL LEU GLY SER SEQRES 15 B 245 GLY GLY MET ALA THR LEU ALA GLN GLN LEU THR ARG GLU SEQRES 16 B 245 LEU ARG VAL PRO VAL ILE ASP GLY VAL SER ALA ALA VAL SEQRES 17 B 245 LYS MET VAL GLU SER LEU VAL ALA LEU GLY LEU ALA THR SEQRES 18 B 245 SER LYS HIS GLY ASP LEU ALA PHE PRO GLU LYS LYS ALA SEQRES 19 B 245 LEU SER GLY GLN PHE GLN SER LEU ASN PRO PHE HET 5HY A 1 11 HET 5HY B 1 11 HETNAM 5HY [(4R)-2,5-DIOXOIMIDAZOLIDIN-4-YL]ACETIC ACID HETSYN 5HY HYDANTOIN-5-ACETIC ACID FORMUL 3 5HY 2(C5 H6 N2 O4) FORMUL 5 HOH *443(H2 O) HELIX 1 1 SER A 14 ALA A 29 1 16 HELIX 2 2 GLY A 49 GLY A 71 1 23 HELIX 3 3 GLY A 84 ALA A 92 1 9 HELIX 4 4 ILE A 99 ALA A 111 1 13 HELIX 5 5 LEU A 120 ARG A 122 5 3 HELIX 6 6 THR A 123 GLY A 135 1 13 HELIX 7 7 PHE A 136 GLN A 138 5 3 HELIX 8 8 PRO A 149 ASP A 155 5 7 HELIX 9 9 GLY A 158 ASP A 175 1 18 HELIX 10 10 SER A 184 THR A 189 5 6 HELIX 11 11 LEU A 190 ARG A 199 1 10 HELIX 12 12 ASP A 204 LEU A 219 1 16 HELIX 13 13 SER A 238 GLN A 242 5 5 HELIX 14 14 SER B 14 ALA B 29 1 16 HELIX 15 15 GLY B 49 GLY B 71 1 23 HELIX 16 16 GLY B 84 ALA B 92 1 9 HELIX 17 17 ILE B 99 ALA B 111 1 13 HELIX 18 18 LEU B 120 ARG B 122 5 3 HELIX 19 19 THR B 123 GLY B 135 1 13 HELIX 20 20 PHE B 136 GLN B 138 5 3 HELIX 21 21 PRO B 149 ASP B 155 5 7 HELIX 22 22 GLY B 158 ASP B 175 1 18 HELIX 23 23 SER B 184 THR B 189 5 6 HELIX 24 24 LEU B 190 ARG B 199 1 10 HELIX 25 25 ASP B 204 LEU B 219 1 16 HELIX 26 26 SER B 238 ASN B 245 5 8 SHEET 1 A 4 THR A 33 VAL A 38 0 SHEET 2 A 4 VAL A 4 ILE A 9 1 N VAL A 4 O GLU A 34 SHEET 3 A 4 GLY A 74 ILE A 77 1 O VAL A 76 N ILE A 9 SHEET 4 A 4 VAL A 96 GLY A 98 1 O ILE A 97 N ILE A 77 SHEET 1 B 4 CYS A 140 ALA A 145 0 SHEET 2 B 4 PHE A 114 THR A 118 1 N THR A 118 O HIS A 144 SHEET 3 B 4 ALA A 179 LEU A 182 1 O VAL A 181 N SER A 115 SHEET 4 B 4 VAL A 202 ILE A 203 1 O ILE A 203 N ILE A 180 SHEET 1 C 4 THR B 33 VAL B 38 0 SHEET 2 C 4 VAL B 4 ILE B 9 1 N VAL B 4 O GLU B 34 SHEET 3 C 4 GLY B 74 ILE B 77 1 O VAL B 76 N ILE B 9 SHEET 4 C 4 VAL B 96 GLY B 98 1 O ILE B 97 N HIS B 75 SHEET 1 D 4 CYS B 140 ALA B 145 0 SHEET 2 D 4 PHE B 114 THR B 118 1 N THR B 118 O HIS B 144 SHEET 3 D 4 ALA B 179 GLY B 183 1 O GLY B 183 N VAL B 117 SHEET 4 D 4 VAL B 202 ILE B 203 1 O ILE B 203 N ILE B 180 SITE 1 AC1 12 ASN A 12 ILE A 47 SER A 79 PHE A 80 SITE 2 AC1 12 THR A 118 THR A 119 VAL A 150 GLY A 183 SITE 3 AC1 12 SER A 184 GLY A 185 HOH A 308 HOH A 327 SITE 1 AC2 12 ASN B 12 ILE B 47 SER B 79 PHE B 80 SITE 2 AC2 12 THR B 118 THR B 119 VAL B 150 GLY B 183 SITE 3 AC2 12 SER B 184 GLY B 185 HOH B 314 HOH B 342 CRYST1 124.955 124.955 126.954 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008003 0.004620 0.000000 0.00000 SCALE2 0.000000 0.009241 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007877 0.00000