PDB Short entry for 3R93 HEADER CELL CYCLE 24-MAR-11 3R93 TITLE CRYSTAL STRUCTURE OF THE CHROMO DOMAIN OF M-PHASE PHOSPHOPROTEIN 8 TITLE 2 BOUND TO H3K9ME3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: M-PHASE PHOSPHOPROTEIN 8; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TWO HYBRID-ASSOCIATED PROTEIN 3 WITH RANBPM, TWA3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: H3K9ME3 PEPTIDE; COMPND 8 CHAIN: E, F, G, H; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MPHOSPH8, MPP8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS EPIGENETICS, CELL CYCLE, M-PHASE, CHROMODOMAIN, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR J.LI,Z.LI,J.RUAN,C.XU,Y.TONG,P.W.PAN,W.TEMPEL,L.CROMBET,J.MIN,J.ZANG, AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 13-SEP-23 3R93 1 LINK REVDAT 4 08-NOV-17 3R93 1 REMARK REVDAT 3 21-MAR-12 3R93 1 JRNL REVDAT 2 19-OCT-11 3R93 1 JRNL VERSN REVDAT 1 06-APR-11 3R93 0 JRNL AUTH J.LI,Z.LI,J.RUAN,C.XU,Y.TONG,P.W.PAN,W.TEMPEL,L.CROMBET, JRNL AUTH 2 J.MIN,J.ZANG JRNL TITL STRUCTURAL BASIS FOR SPECIFIC BINDING OF HUMAN MPP8 JRNL TITL 2 CHROMODOMAIN TO HISTONE H3 METHYLATED AT LYSINE 9. JRNL REF PLOS ONE V. 6 25104 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 22022377 JRNL DOI 10.1371/JOURNAL.PONE.0025104 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 24241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS (SFTOOLS) REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.103 REMARK 3 FREE R VALUE TEST SET COUNT : 1237 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.11 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1645 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2178 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.82800 REMARK 3 B22 (A**2) : 0.90300 REMARK 3 B33 (A**2) : 1.92500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.147 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.486 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2210 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1478 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2980 ; 1.369 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3616 ; 0.803 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 275 ; 5.878 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;38.148 ;24.783 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 373 ;14.573 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;20.282 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 335 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2419 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 431 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1391 ; 0.579 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 574 ; 0.138 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2196 ; 1.142 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 819 ; 2.019 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 784 ; 3.238 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 7.6416 23.1219 13.7621 REMARK 3 T TENSOR REMARK 3 T11: 0.1617 T22: 0.1160 REMARK 3 T33: 0.2553 T12: -0.0129 REMARK 3 T13: 0.0120 T23: -0.0924 REMARK 3 L TENSOR REMARK 3 L11: 8.3645 L22: 4.7554 REMARK 3 L33: 4.1926 L12: -1.0106 REMARK 3 L13: 0.6883 L23: -1.2499 REMARK 3 S TENSOR REMARK 3 S11: -0.0851 S12: -0.7086 S13: 0.5864 REMARK 3 S21: 0.3101 S22: -0.0024 S23: -0.0706 REMARK 3 S31: -0.3619 S32: 0.0664 S33: 0.0875 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 57 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): -28.2140 28.9309 16.1108 REMARK 3 T TENSOR REMARK 3 T11: 0.1182 T22: 0.2003 REMARK 3 T33: 0.0849 T12: 0.0110 REMARK 3 T13: -0.0539 T23: 0.0647 REMARK 3 L TENSOR REMARK 3 L11: 7.2610 L22: 6.7971 REMARK 3 L33: 5.0924 L12: 0.2408 REMARK 3 L13: -0.9237 L23: 2.2377 REMARK 3 S TENSOR REMARK 3 S11: 0.0430 S12: -0.7127 S13: -0.4147 REMARK 3 S21: 0.4189 S22: 0.0339 S23: -0.4506 REMARK 3 S31: 0.2146 S32: 0.1465 S33: -0.0769 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 57 C 114 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2962 23.7773 -1.0496 REMARK 3 T TENSOR REMARK 3 T11: 0.0937 T22: 0.0270 REMARK 3 T33: 0.2594 T12: 0.0016 REMARK 3 T13: 0.0613 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 6.2901 L22: 3.8660 REMARK 3 L33: 4.1750 L12: 0.6015 REMARK 3 L13: 2.7645 L23: 1.3686 REMARK 3 S TENSOR REMARK 3 S11: -0.0402 S12: 0.0310 S13: 0.5298 REMARK 3 S21: 0.0724 S22: -0.1452 S23: 0.0557 REMARK 3 S31: -0.1993 S32: -0.0438 S33: 0.1854 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 56 D 114 REMARK 3 ORIGIN FOR THE GROUP (A): -7.7307 7.7953 29.6997 REMARK 3 T TENSOR REMARK 3 T11: 0.2194 T22: 0.4412 REMARK 3 T33: 0.0646 T12: 0.0521 REMARK 3 T13: 0.0386 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 6.3348 L22: 6.7067 REMARK 3 L33: 7.0467 L12: -1.1084 REMARK 3 L13: 0.2976 L23: -2.5647 REMARK 3 S TENSOR REMARK 3 S11: 0.0236 S12: -0.4549 S13: 0.2373 REMARK 3 S21: 0.4417 S22: 0.1873 S23: 0.3608 REMARK 3 S31: -0.2768 S32: -0.3277 S33: -0.2109 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 4 E 15 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6432 18.1418 22.0438 REMARK 3 T TENSOR REMARK 3 T11: 0.2679 T22: 0.4094 REMARK 3 T33: 0.2358 T12: 0.0965 REMARK 3 T13: -0.0639 T23: -0.1446 REMARK 3 L TENSOR REMARK 3 L11: 12.2690 L22: 8.4499 REMARK 3 L33: 6.6965 L12: 5.8094 REMARK 3 L13: -3.1847 L23: -3.5280 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: -1.8250 S13: 0.7268 REMARK 3 S21: -0.0803 S22: -0.6403 S23: -0.2628 REMARK 3 S31: -0.2706 S32: -0.0167 S33: 0.6561 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 2 F 15 REMARK 3 ORIGIN FOR THE GROUP (A): -29.5733 20.1712 13.0099 REMARK 3 T TENSOR REMARK 3 T11: 0.1956 T22: 0.1964 REMARK 3 T33: 0.2996 T12: 0.0672 REMARK 3 T13: -0.0270 T23: 0.0777 REMARK 3 L TENSOR REMARK 3 L11: 12.8424 L22: 6.5269 REMARK 3 L33: 16.5804 L12: 2.9100 REMARK 3 L13: 11.9157 L23: 3.4024 REMARK 3 S TENSOR REMARK 3 S11: 0.3221 S12: -0.5702 S13: -0.8140 REMARK 3 S21: 0.5294 S22: -0.0128 S23: -0.5267 REMARK 3 S31: 0.8159 S32: -0.0988 S33: -0.3093 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 4 G 15 REMARK 3 ORIGIN FOR THE GROUP (A): -5.6351 18.7831 -9.5567 REMARK 3 T TENSOR REMARK 3 T11: 0.0986 T22: 0.1722 REMARK 3 T33: 0.1914 T12: -0.0660 REMARK 3 T13: 0.0113 T23: 0.0531 REMARK 3 L TENSOR REMARK 3 L11: 21.5920 L22: 20.7885 REMARK 3 L33: 2.9341 L12: -16.6000 REMARK 3 L13: -0.0287 L23: 1.0745 REMARK 3 S TENSOR REMARK 3 S11: 0.0645 S12: 0.9934 S13: 0.4975 REMARK 3 S21: 0.0965 S22: -0.4343 S23: 0.1042 REMARK 3 S31: -0.1814 S32: 0.4417 S33: 0.3698 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 4 H 15 REMARK 3 ORIGIN FOR THE GROUP (A): -5.7694 16.6567 24.9892 REMARK 3 T TENSOR REMARK 3 T11: 0.2849 T22: 0.3819 REMARK 3 T33: 0.2264 T12: 0.1249 REMARK 3 T13: -0.0467 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 24.2297 L22: 5.9870 REMARK 3 L33: 17.4879 L12: 1.4668 REMARK 3 L13: -17.9224 L23: -1.1334 REMARK 3 S TENSOR REMARK 3 S11: 0.2208 S12: -0.5771 S13: 1.1764 REMARK 3 S21: 0.4591 S22: 0.1264 S23: -0.1679 REMARK 3 S31: -0.7145 S32: -0.0996 S33: -0.3472 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED. THE PROGRAMS BUCCANEER, COOT REMARK 3 WERE USED AS WELL AS THE MOLPROBITY SERVER. REMARK 4 REMARK 4 3R93 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064643. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24361 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.73500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3LWE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG2000-MME, 8-FOLD EXCESS OF REMARK 280 H3K9ME3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.57400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.00250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.57400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.00250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY INFORMATION FOR REMARK 300 THE STRUCTURE IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 55 REMARK 465 GLU A 56 REMARK 465 ALA A 115 REMARK 465 LYS A 116 REMARK 465 GLY B 55 REMARK 465 GLU B 56 REMARK 465 ALA B 115 REMARK 465 LYS B 116 REMARK 465 GLY C 55 REMARK 465 GLU C 56 REMARK 465 ALA C 115 REMARK 465 LYS C 116 REMARK 465 GLY D 55 REMARK 465 ALA D 115 REMARK 465 LYS D 116 REMARK 465 ALA E 1 REMARK 465 ARG E 2 REMARK 465 THR E 3 REMARK 465 ALA F 1 REMARK 465 ALA G 1 REMARK 465 ARG G 2 REMARK 465 THR G 3 REMARK 465 ALA H 1 REMARK 465 ARG H 2 REMARK 465 THR H 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 57 CG OD1 OD2 REMARK 470 LYS A 73 CE NZ REMARK 470 ILE A 94 CG1 CG2 CD1 REMARK 470 GLU A 97 CG CD OE1 OE2 REMARK 470 LYS A 100 CD CE NZ REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 LYS B 63 CE NZ REMARK 470 LYS B 73 NZ REMARK 470 ILE B 94 CG1 CG2 CD1 REMARK 470 GLU B 97 CG CD OE1 OE2 REMARK 470 LYS B 100 CG CD CE NZ REMARK 470 GLU B 101 CG CD OE1 OE2 REMARK 470 GLU B 105 CG CD OE1 OE2 REMARK 470 LYS B 108 CE NZ REMARK 470 LYS B 109 CG CD CE NZ REMARK 470 ASP C 57 CG OD1 OD2 REMARK 470 LYS C 73 CE NZ REMARK 470 ILE C 94 CG1 CG2 CD1 REMARK 470 GLU C 97 CG CD OE1 OE2 REMARK 470 LYS C 100 CG CD CE NZ REMARK 470 GLU C 101 CG CD OE1 OE2 REMARK 470 GLU C 105 CG CD OE1 OE2 REMARK 470 ARG C 107 NE CZ NH1 NH2 REMARK 470 LYS C 108 CG CD CE NZ REMARK 470 LYS C 109 CG CD CE NZ REMARK 470 GLU D 56 CG CD OE1 OE2 REMARK 470 LYS D 81 CE NZ REMARK 470 ILE D 94 CG1 CG2 CD1 REMARK 470 GLU D 97 CG CD OE1 OE2 REMARK 470 LYS D 100 CD CE NZ REMARK 470 GLU D 101 CG CD OE1 OE2 REMARK 470 GLU D 105 CG CD OE1 OE2 REMARK 470 LYS D 109 CG CD CE NZ REMARK 470 LYS E 4 CG CD CE NZ REMARK 470 ARG E 8 NE CZ NH1 NH2 REMARK 470 LYS E 14 CE NZ REMARK 470 ARG F 2 CG CD NE CZ NH1 NH2 REMARK 470 THR F 3 OG1 CG2 REMARK 470 LYS G 4 CG CD CE NZ REMARK 470 LYS G 14 NZ REMARK 470 LYS H 4 CG CD CE NZ REMARK 470 LYS H 14 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP C 87 UNK UNX C 1 1.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 67 CG - SD - CE ANGL. DEV. = -10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LWE RELATED DB: PDB DBREF 3R93 A 55 116 UNP Q99549 MPP8_HUMAN 55 116 DBREF 3R93 B 55 116 UNP Q99549 MPP8_HUMAN 55 116 DBREF 3R93 C 55 116 UNP Q99549 MPP8_HUMAN 55 116 DBREF 3R93 D 55 116 UNP Q99549 MPP8_HUMAN 55 116 DBREF 3R93 E 1 15 PDB 3R93 3R93 1 15 DBREF 3R93 F 1 15 PDB 3R93 3R93 1 15 DBREF 3R93 G 1 15 PDB 3R93 3R93 1 15 DBREF 3R93 H 1 15 PDB 3R93 3R93 1 15 SEQRES 1 A 62 GLY GLU ASP VAL PHE GLU VAL GLU LYS ILE LEU ASP MET SEQRES 2 A 62 LYS THR GLU GLY GLY LYS VAL LEU TYR LYS VAL ARG TRP SEQRES 3 A 62 LYS GLY TYR THR SER ASP ASP ASP THR TRP GLU PRO GLU SEQRES 4 A 62 ILE HIS LEU GLU ASP CYS LYS GLU VAL LEU LEU GLU PHE SEQRES 5 A 62 ARG LYS LYS ILE ALA GLU ASN LYS ALA LYS SEQRES 1 B 62 GLY GLU ASP VAL PHE GLU VAL GLU LYS ILE LEU ASP MET SEQRES 2 B 62 LYS THR GLU GLY GLY LYS VAL LEU TYR LYS VAL ARG TRP SEQRES 3 B 62 LYS GLY TYR THR SER ASP ASP ASP THR TRP GLU PRO GLU SEQRES 4 B 62 ILE HIS LEU GLU ASP CYS LYS GLU VAL LEU LEU GLU PHE SEQRES 5 B 62 ARG LYS LYS ILE ALA GLU ASN LYS ALA LYS SEQRES 1 C 62 GLY GLU ASP VAL PHE GLU VAL GLU LYS ILE LEU ASP MET SEQRES 2 C 62 LYS THR GLU GLY GLY LYS VAL LEU TYR LYS VAL ARG TRP SEQRES 3 C 62 LYS GLY TYR THR SER ASP ASP ASP THR TRP GLU PRO GLU SEQRES 4 C 62 ILE HIS LEU GLU ASP CYS LYS GLU VAL LEU LEU GLU PHE SEQRES 5 C 62 ARG LYS LYS ILE ALA GLU ASN LYS ALA LYS SEQRES 1 D 62 GLY GLU ASP VAL PHE GLU VAL GLU LYS ILE LEU ASP MET SEQRES 2 D 62 LYS THR GLU GLY GLY LYS VAL LEU TYR LYS VAL ARG TRP SEQRES 3 D 62 LYS GLY TYR THR SER ASP ASP ASP THR TRP GLU PRO GLU SEQRES 4 D 62 ILE HIS LEU GLU ASP CYS LYS GLU VAL LEU LEU GLU PHE SEQRES 5 D 62 ARG LYS LYS ILE ALA GLU ASN LYS ALA LYS SEQRES 1 E 15 ALA ARG THR LYS GLN THR ALA ARG M3L SER THR GLY GLY SEQRES 2 E 15 LYS ALA SEQRES 1 F 15 ALA ARG THR LYS GLN THR ALA ARG M3L SER THR GLY GLY SEQRES 2 F 15 LYS ALA SEQRES 1 G 15 ALA ARG THR LYS GLN THR ALA ARG M3L SER THR GLY GLY SEQRES 2 G 15 LYS ALA SEQRES 1 H 15 ALA ARG THR LYS GLN THR ALA ARG M3L SER THR GLY GLY SEQRES 2 H 15 LYS ALA MODRES 3R93 M3L E 9 LYS N-TRIMETHYLLYSINE MODRES 3R93 M3L F 9 LYS N-TRIMETHYLLYSINE MODRES 3R93 M3L G 9 LYS N-TRIMETHYLLYSINE MODRES 3R93 M3L H 9 LYS N-TRIMETHYLLYSINE HET M3L E 9 12 HET M3L F 9 12 HET M3L G 9 12 HET M3L H 9 12 HET UNX A 2 1 HET UNX C 1 1 HET UNX D 3 1 HETNAM M3L N-TRIMETHYLLYSINE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 5 M3L 4(C9 H21 N2 O2 1+) FORMUL 9 UNX 3(X) FORMUL 12 HOH *91(H2 O) HELIX 1 1 THR A 84 ASP A 87 5 4 HELIX 2 2 ILE A 94 GLU A 97 5 4 HELIX 3 3 CYS A 99 LYS A 114 1 16 HELIX 4 4 THR B 84 ASP B 88 5 5 HELIX 5 5 ILE B 94 LEU B 96 5 3 HELIX 6 6 CYS B 99 ASN B 113 1 15 HELIX 7 7 THR C 84 ASP C 88 5 5 HELIX 8 8 ILE C 94 GLU C 97 5 4 HELIX 9 9 CYS C 99 LYS C 114 1 16 HELIX 10 10 THR D 84 ASP D 87 5 4 HELIX 11 11 ILE D 94 GLU D 97 5 4 HELIX 12 12 CYS D 99 LYS D 114 1 16 SHEET 1 A 5 THR E 6 ARG E 8 0 SHEET 2 A 5 VAL A 58 GLU A 70 -1 N PHE A 59 O ALA E 7 SHEET 3 A 5 LYS A 73 TRP A 80 -1 O LEU A 75 N LYS A 68 SHEET 4 A 5 THR A 89 PRO A 92 -1 O THR A 89 N VAL A 78 SHEET 5 A 5 GLY H 13 LYS H 14 -1 O GLY H 13 N TRP A 90 SHEET 1 B 4 THR B 89 PRO B 92 0 SHEET 2 B 4 LYS B 73 TRP B 80 -1 N VAL B 78 O THR B 89 SHEET 3 B 4 VAL B 58 GLU B 70 -1 N LYS B 68 O LEU B 75 SHEET 4 B 4 THR F 6 ARG F 8 -1 O ALA F 7 N PHE B 59 SHEET 1 C 4 THR C 89 PRO C 92 0 SHEET 2 C 4 LYS C 73 TRP C 80 -1 N VAL C 78 O THR C 89 SHEET 3 C 4 VAL C 58 GLU C 70 -1 N LYS C 68 O LEU C 75 SHEET 4 C 4 THR G 6 ARG G 8 -1 O ALA G 7 N PHE C 59 SHEET 1 D 5 GLY E 13 LYS E 14 0 SHEET 2 D 5 THR D 89 PRO D 92 -1 N TRP D 90 O GLY E 13 SHEET 3 D 5 LYS D 73 TRP D 80 -1 N VAL D 78 O THR D 89 SHEET 4 D 5 VAL D 58 GLU D 70 -1 N LEU D 65 O LYS D 77 SHEET 5 D 5 THR H 6 ARG H 8 -1 O ALA H 7 N PHE D 59 LINK C ARG E 8 N M3L E 9 1555 1555 1.34 LINK C M3L E 9 N SER E 10 1555 1555 1.34 LINK C ARG F 8 N M3L F 9 1555 1555 1.33 LINK C M3L F 9 N SER F 10 1555 1555 1.33 LINK C ARG G 8 N M3L G 9 1555 1555 1.33 LINK C M3L G 9 N SER G 10 1555 1555 1.33 LINK C ARG H 8 N M3L H 9 1555 1555 1.33 LINK C M3L H 9 N SER H 10 1555 1555 1.34 CRYST1 71.148 74.005 72.609 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014055 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013772 0.00000