PDB Short entry for 3RBB HEADER VIRAL PROTEIN, PROTEIN BINDING 29-MAR-11 3RBB TITLE HIV-1 NEF PROTEIN IN COMPLEX WITH ENGINEERED HCK SH3 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN NEF; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: 3'ORF, NEGATIVE FACTOR, F-PROTEIN, C-TERMINAL CORE PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TYROSINE-PROTEIN KINASE HCK; COMPND 9 CHAIN: B, D; COMPND 10 SYNONYM: HEMOPOIETIC CELL KINASE, P59-HCK/P60-HCK; COMPND 11 EC: 2.7.10.2; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HIV-1 M:B_ARV2/SF2; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11685; SOURCE 5 STRAIN: SF2; SOURCE 6 GENE: HIV-1 NEF, NEF; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX-4T1 TEV; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: HCK; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PET-28B KEYWDS HIV-1 NEF, DILEUCINE MOTIF, SH3 DOMAIN, RECEPTOR INTERNALIZATION, KEYWDS 2 PXXP MOTIF, PROTEIN BINDING, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.A.HORENKAMP,A.SCHULTE,M.WEYAND,M.GEYER REVDAT 4 13-SEP-23 3RBB 1 REMARK SEQADV REVDAT 3 29-JUN-11 3RBB 1 JRNL REVDAT 2 22-JUN-11 3RBB 1 JRNL REVDAT 1 27-APR-11 3RBB 0 JRNL AUTH F.A.HORENKAMP,S.BREUER,A.SCHULTE,S.LULF,M.WEYAND,K.SAKSELA, JRNL AUTH 2 M.GEYER JRNL TITL CONFORMATION OF THE DILEUCINE-BASED SORTING MOTIF IN HIV-1 JRNL TITL 2 NEF REVEALED BY INTERMOLECULAR DOMAIN ASSEMBLY. JRNL REF TRAFFIC V. 12 867 2011 JRNL REFN ISSN 1398-9219 JRNL PMID 21477083 JRNL DOI 10.1111/J.1600-0854.2011.01205.X REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1429 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1984 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3120 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.87000 REMARK 3 B22 (A**2) : 2.58000 REMARK 3 B33 (A**2) : -3.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.206 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.523 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3268 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4450 ; 1.329 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 380 ; 5.926 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 161 ;34.616 ;23.043 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 511 ;16.141 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;19.430 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 449 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2554 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1901 ; 0.739 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3068 ; 1.364 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1367 ; 1.966 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1378 ; 3.194 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): 35.3980 59.2643 3.0359 REMARK 3 T TENSOR REMARK 3 T11: 0.0309 T22: 0.1352 REMARK 3 T33: 0.1553 T12: -0.0145 REMARK 3 T13: 0.0230 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.4880 L22: 2.2613 REMARK 3 L33: 2.6334 L12: 0.1011 REMARK 3 L13: 0.4979 L23: 0.0762 REMARK 3 S TENSOR REMARK 3 S11: 0.0556 S12: 0.0006 S13: -0.0988 REMARK 3 S21: -0.0010 S22: -0.0501 S23: 0.1341 REMARK 3 S31: 0.2641 S32: -0.1123 S33: -0.0054 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 79 B 138 REMARK 3 ORIGIN FOR THE GROUP (A): 43.1758 70.7861 33.3010 REMARK 3 T TENSOR REMARK 3 T11: 0.3147 T22: 0.2808 REMARK 3 T33: 0.0702 T12: -0.1401 REMARK 3 T13: -0.0252 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 3.4501 L22: 3.7758 REMARK 3 L33: 9.6026 L12: -1.8964 REMARK 3 L13: -1.7204 L23: 1.5551 REMARK 3 S TENSOR REMARK 3 S11: 0.1405 S12: -0.3713 S13: 0.1838 REMARK 3 S21: 0.6240 S22: -0.1109 S23: -0.3956 REMARK 3 S31: -0.4464 S32: 0.6004 S33: -0.0296 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 69 C 208 REMARK 3 ORIGIN FOR THE GROUP (A): 32.4478 30.6924 -4.7379 REMARK 3 T TENSOR REMARK 3 T11: 0.0902 T22: 0.0296 REMARK 3 T33: 0.0670 T12: -0.0241 REMARK 3 T13: 0.0112 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.9350 L22: 4.1162 REMARK 3 L33: 4.0561 L12: 0.8734 REMARK 3 L13: 0.9388 L23: 1.6543 REMARK 3 S TENSOR REMARK 3 S11: 0.0520 S12: 0.0808 S13: 0.2002 REMARK 3 S21: 0.1786 S22: -0.1642 S23: 0.1869 REMARK 3 S31: 0.4112 S32: 0.0412 S33: 0.1121 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 80 D 137 REMARK 3 ORIGIN FOR THE GROUP (A): 33.6164 18.7551 -31.6847 REMARK 3 T TENSOR REMARK 3 T11: 0.4214 T22: 0.2886 REMARK 3 T33: 0.0334 T12: 0.0397 REMARK 3 T13: 0.0003 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 2.9765 L22: 5.0167 REMARK 3 L33: 10.3464 L12: 0.2755 REMARK 3 L13: 1.8816 L23: 3.2874 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: 0.2912 S13: -0.2655 REMARK 3 S21: -0.3176 S22: 0.1489 S23: -0.1805 REMARK 3 S31: 0.9010 S32: 0.7994 S33: -0.1621 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RBB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064719. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977032 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28573 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5.5.0109 REMARK 200 STARTING MODEL: PDB ENTRY 1EFN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 8% ETHYLENE GLYCOL, 22% REMARK 280 PEG 8000, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.59500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.76500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.44000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.76500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.59500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.44000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 45 REMARK 465 ALA A 46 REMARK 465 MET A 47 REMARK 465 ALA A 48 REMARK 465 SER A 49 REMARK 465 SER A 50 REMARK 465 ASN A 51 REMARK 465 THR A 52 REMARK 465 ALA A 53 REMARK 465 ALA A 54 REMARK 465 THR A 55 REMARK 465 ASN A 56 REMARK 465 ALA A 57 REMARK 465 ASP A 58 REMARK 465 SER A 59 REMARK 465 ALA A 60 REMARK 465 TRP A 61 REMARK 465 LEU A 62 REMARK 465 GLU A 63 REMARK 465 ALA A 64 REMARK 465 GLN A 65 REMARK 465 GLU A 66 REMARK 465 GLU A 67 REMARK 465 GLU A 68 REMARK 465 GLU A 69 REMARK 465 VAL A 70 REMARK 465 GLY A 71 REMARK 465 ASP A 209 REMARK 465 ALA A 210 REMARK 465 MET B 78 REMARK 465 GLY C 45 REMARK 465 ALA C 46 REMARK 465 MET C 47 REMARK 465 ALA C 48 REMARK 465 SER C 49 REMARK 465 SER C 50 REMARK 465 ASN C 51 REMARK 465 THR C 52 REMARK 465 ALA C 53 REMARK 465 ALA C 54 REMARK 465 THR C 55 REMARK 465 ASN C 56 REMARK 465 ALA C 57 REMARK 465 ASP C 58 REMARK 465 SER C 59 REMARK 465 ALA C 60 REMARK 465 TRP C 61 REMARK 465 LEU C 62 REMARK 465 GLU C 63 REMARK 465 ALA C 64 REMARK 465 GLN C 65 REMARK 465 GLU C 66 REMARK 465 GLU C 67 REMARK 465 GLU C 68 REMARK 465 VAL C 157 REMARK 465 GLU C 158 REMARK 465 GLU C 159 REMARK 465 ALA C 160 REMARK 465 ASN C 161 REMARK 465 GLU C 162 REMARK 465 GLY C 163 REMARK 465 GLU C 164 REMARK 465 ASN C 165 REMARK 465 ASN C 166 REMARK 465 SER C 173 REMARK 465 LEU C 174 REMARK 465 HIS C 175 REMARK 465 GLY C 176 REMARK 465 MET C 177 REMARK 465 GLU C 178 REMARK 465 ASP C 179 REMARK 465 ASP C 209 REMARK 465 ALA C 210 REMARK 465 MET D 78 REMARK 465 GLU D 79 REMARK 465 SER D 138 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 72 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 LYS A 208 CG CD CE NZ REMARK 470 GLU B 79 CG CD OE1 OE2 REMARK 470 ARG B 123 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 69 CG CD OE1 OE2 REMARK 470 LYS C 156 CG CD CE NZ REMARK 470 LYS C 208 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY C 99 O HOH C 264 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EFN RELATED DB: PDB REMARK 900 RELATED ID: 1AVZ RELATED DB: PDB REMARK 900 RELATED ID: 2NEF RELATED DB: PDB REMARK 900 RELATED ID: 3REA RELATED DB: PDB REMARK 900 RELATED ID: 3REB RELATED DB: PDB DBREF 3RBB A 45 210 UNP P03407 NEF_HV1A2 45 210 DBREF 3RBB B 79 138 UNP P08631 HCK_HUMAN 79 138 DBREF 3RBB C 45 210 UNP P03407 NEF_HV1A2 45 210 DBREF 3RBB D 79 138 UNP P08631 HCK_HUMAN 79 138 SEQADV 3RBB MET A 47 UNP P03407 ILE 47 ENGINEERED MUTATION SEQADV 3RBB ALA A 48 UNP P03407 THR 48 ENGINEERED MUTATION SEQADV 3RBB SER A 59 UNP P03407 CYS 59 ENGINEERED MUTATION SEQADV 3RBB ALA A 210 UNP P03407 CYS 210 ENGINEERED MUTATION SEQADV 3RBB MET B 78 UNP P08631 INITIATING METHIONINE SEQADV 3RBB TYR B 90 UNP P08631 GLU 90 ENGINEERED MUTATION SEQADV 3RBB SER B 91 UNP P08631 ALA 91 ENGINEERED MUTATION SEQADV 3RBB PRO B 92 UNP P08631 ILE 92 ENGINEERED MUTATION SEQADV 3RBB PHE B 93 UNP P08631 HIS 93 ENGINEERED MUTATION SEQADV 3RBB SER B 94 UNP P08631 HIS 94 ENGINEERED MUTATION SEQADV 3RBB TRP B 95 UNP P08631 GLU 95 ENGINEERED MUTATION SEQADV 3RBB MET C 47 UNP P03407 ILE 47 ENGINEERED MUTATION SEQADV 3RBB ALA C 48 UNP P03407 THR 48 ENGINEERED MUTATION SEQADV 3RBB SER C 59 UNP P03407 CYS 59 ENGINEERED MUTATION SEQADV 3RBB ALA C 210 UNP P03407 CYS 210 ENGINEERED MUTATION SEQADV 3RBB MET D 78 UNP P08631 INITIATING METHIONINE SEQADV 3RBB TYR D 90 UNP P08631 GLU 90 ENGINEERED MUTATION SEQADV 3RBB SER D 91 UNP P08631 ALA 91 ENGINEERED MUTATION SEQADV 3RBB PRO D 92 UNP P08631 ILE 92 ENGINEERED MUTATION SEQADV 3RBB PHE D 93 UNP P08631 HIS 93 ENGINEERED MUTATION SEQADV 3RBB SER D 94 UNP P08631 HIS 94 ENGINEERED MUTATION SEQADV 3RBB TRP D 95 UNP P08631 GLU 95 ENGINEERED MUTATION SEQRES 1 A 166 GLY ALA MET ALA SER SER ASN THR ALA ALA THR ASN ALA SEQRES 2 A 166 ASP SER ALA TRP LEU GLU ALA GLN GLU GLU GLU GLU VAL SEQRES 3 A 166 GLY PHE PRO VAL ARG PRO GLN VAL PRO LEU ARG PRO MET SEQRES 4 A 166 THR TYR LYS ALA ALA LEU ASP ILE SER HIS PHE LEU LYS SEQRES 5 A 166 GLU LYS GLY GLY LEU GLU GLY LEU ILE TRP SER GLN ARG SEQRES 6 A 166 ARG GLN GLU ILE LEU ASP LEU TRP ILE TYR HIS THR GLN SEQRES 7 A 166 GLY TYR PHE PRO ASP TRP GLN ASN TYR THR PRO GLY PRO SEQRES 8 A 166 GLY ILE ARG TYR PRO LEU THR PHE GLY TRP CYS PHE LYS SEQRES 9 A 166 LEU VAL PRO VAL GLU PRO GLU LYS VAL GLU GLU ALA ASN SEQRES 10 A 166 GLU GLY GLU ASN ASN SER LEU LEU HIS PRO MET SER LEU SEQRES 11 A 166 HIS GLY MET GLU ASP ALA GLU LYS GLU VAL LEU VAL TRP SEQRES 12 A 166 ARG PHE ASP SER LYS LEU ALA PHE HIS HIS MET ALA ARG SEQRES 13 A 166 GLU LEU HIS PRO GLU TYR TYR LYS ASP ALA SEQRES 1 B 61 MET GLU ASP ILE ILE VAL VAL ALA LEU TYR ASP TYR TYR SEQRES 2 B 61 SER PRO PHE SER TRP ASP LEU SER PHE GLN LYS GLY ASP SEQRES 3 B 61 GLN MET VAL VAL LEU GLU GLU SER GLY GLU TRP TRP LYS SEQRES 4 B 61 ALA ARG SER LEU ALA THR ARG LYS GLU GLY TYR ILE PRO SEQRES 5 B 61 SER ASN TYR VAL ALA ARG VAL ASP SER SEQRES 1 C 166 GLY ALA MET ALA SER SER ASN THR ALA ALA THR ASN ALA SEQRES 2 C 166 ASP SER ALA TRP LEU GLU ALA GLN GLU GLU GLU GLU VAL SEQRES 3 C 166 GLY PHE PRO VAL ARG PRO GLN VAL PRO LEU ARG PRO MET SEQRES 4 C 166 THR TYR LYS ALA ALA LEU ASP ILE SER HIS PHE LEU LYS SEQRES 5 C 166 GLU LYS GLY GLY LEU GLU GLY LEU ILE TRP SER GLN ARG SEQRES 6 C 166 ARG GLN GLU ILE LEU ASP LEU TRP ILE TYR HIS THR GLN SEQRES 7 C 166 GLY TYR PHE PRO ASP TRP GLN ASN TYR THR PRO GLY PRO SEQRES 8 C 166 GLY ILE ARG TYR PRO LEU THR PHE GLY TRP CYS PHE LYS SEQRES 9 C 166 LEU VAL PRO VAL GLU PRO GLU LYS VAL GLU GLU ALA ASN SEQRES 10 C 166 GLU GLY GLU ASN ASN SER LEU LEU HIS PRO MET SER LEU SEQRES 11 C 166 HIS GLY MET GLU ASP ALA GLU LYS GLU VAL LEU VAL TRP SEQRES 12 C 166 ARG PHE ASP SER LYS LEU ALA PHE HIS HIS MET ALA ARG SEQRES 13 C 166 GLU LEU HIS PRO GLU TYR TYR LYS ASP ALA SEQRES 1 D 61 MET GLU ASP ILE ILE VAL VAL ALA LEU TYR ASP TYR TYR SEQRES 2 D 61 SER PRO PHE SER TRP ASP LEU SER PHE GLN LYS GLY ASP SEQRES 3 D 61 GLN MET VAL VAL LEU GLU GLU SER GLY GLU TRP TRP LYS SEQRES 4 D 61 ALA ARG SER LEU ALA THR ARG LYS GLU GLY TYR ILE PRO SEQRES 5 D 61 SER ASN TYR VAL ALA ARG VAL ASP SER HET EDO A 2 4 HET EDO C 1 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 HOH *208(H2 O) HELIX 1 1 THR A 84 GLY A 99 1 16 HELIX 2 2 SER A 107 GLY A 123 1 17 HELIX 3 3 ASN A 165 HIS A 170 1 6 HELIX 4 4 PRO A 171 LEU A 174 5 4 HELIX 5 5 SER A 191 PHE A 195 5 5 HELIX 6 6 HIS A 197 HIS A 203 1 7 HELIX 7 7 PRO A 204 TYR A 207 5 4 HELIX 8 8 THR C 84 GLY C 99 1 16 HELIX 9 9 SER C 107 GLY C 123 1 17 HELIX 10 10 SER C 191 PHE C 195 5 5 HELIX 11 11 HIS C 197 HIS C 203 1 7 HELIX 12 12 PRO C 204 TYR C 207 5 4 SHEET 1 A 2 PHE A 147 PRO A 151 0 SHEET 2 A 2 LEU A 185 PHE A 189 -1 O VAL A 186 N VAL A 150 SHEET 1 B 5 GLU B 125 PRO B 129 0 SHEET 2 B 5 TRP B 114 SER B 119 -1 N ALA B 117 O GLY B 126 SHEET 3 B 5 GLN B 104 GLU B 109 -1 N LEU B 108 O LYS B 116 SHEET 4 B 5 ILE B 82 ALA B 85 -1 N VAL B 83 O MET B 105 SHEET 5 B 5 VAL B 133 VAL B 136 -1 O VAL B 136 N ILE B 82 SHEET 1 C 2 PHE C 147 PRO C 151 0 SHEET 2 C 2 LEU C 185 PHE C 189 -1 O VAL C 186 N VAL C 150 SHEET 1 D 5 GLU D 125 PRO D 129 0 SHEET 2 D 5 TRP D 114 SER D 119 -1 N ALA D 117 O GLY D 126 SHEET 3 D 5 GLN D 104 GLU D 109 -1 N LEU D 108 O LYS D 116 SHEET 4 D 5 ILE D 82 ALA D 85 -1 N VAL D 83 O MET D 105 SHEET 5 D 5 VAL D 133 ARG D 135 -1 O ALA D 134 N VAL D 84 CISPEP 1 GLY A 134 PRO A 135 0 4.61 CISPEP 2 GLU A 159 ALA A 160 0 1.28 CISPEP 3 GLY C 134 PRO C 135 0 5.32 SITE 1 AC1 3 ALA A 180 VAL A 184 ARG C 110 SITE 1 AC2 5 HOH A 31 HOH A 36 TRP A 106 ARG A 138 SITE 2 AC2 5 LEU A 149 CRYST1 43.190 90.880 169.530 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023154 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011004 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005899 0.00000