PDB Short entry for 3RT5 HEADER HYDROLASE 03-MAY-11 3RT5 TITLE LYSOZYME IN 30% PROPANOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C, ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS GLOBULAR PROTEIN, HYDROLASE, CYTOPLASMIC VESICLES(LYSOSOMES) EXPDTA X-RAY DIFFRACTION AUTHOR P.SHARMA,A.K.SOLANKI,ASHISH REVDAT 1 15-JUN-11 3RT5 0 JRNL AUTH P.SHARMA,A.K.SOLANKI,ASHISH JRNL TITL CRYSTAL STRUCTURE OF LYSOZYME IN 30% PROPANOL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 11858 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.3602 - 2.7773 0.99 2944 156 0.1938 0.2037 REMARK 3 2 2.7773 - 2.2049 0.99 2806 146 0.1714 0.2265 REMARK 3 3 2.2049 - 1.9263 0.99 2788 138 0.1511 0.2138 REMARK 3 4 1.9263 - 1.7502 0.99 2752 128 0.2001 0.2490 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.40 REMARK 3 SHRINKAGE RADIUS : 0.04 REMARK 3 K_SOL : 0.52 REMARK 3 B_SOL : 80.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.09700 REMARK 3 B22 (A**2) : 2.09700 REMARK 3 B33 (A**2) : -4.19410 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.023 1065 REMARK 3 ANGLE : 1.033 1411 REMARK 3 CHIRALITY : 0.079 144 REMARK 3 PLANARITY : 0.004 182 REMARK 3 DIHEDRAL : 12.014 366 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RT5 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAY-11. REMARK 100 THE RCSB ID CODE IS RCSB065344. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12009 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 42.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.09600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 16.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40MM SODIUM ACETATE, 150MM SODIUM REMARK 280 CHLORIDE, 30% 2-PROPANOL, PH 3.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.48050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.96750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.96750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.72075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.96750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.96750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.24025 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.96750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.96750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.72075 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.96750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.96750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.24025 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.48050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH X 174 LIES ON A SPECIAL POSITION. REMARK 375 HOH X 244 LIES ON A SPECIAL POSITION. REMARK 375 CL CL X 155 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OXT LEU X 129 OXT LEU X 129 7554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA X 130 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH X 230 O REMARK 620 2 SER X 81 O 155.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA X 135 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH X 215 O REMARK 620 2 ASP X 87 O 120.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA X 133 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH X 214 O REMARK 620 2 SER X 85 O 120.6 REMARK 620 3 HOH X 211 O 107.4 109.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA X 136 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH X 172 O REMARK 620 2 ASN X 37 O 125.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA X 130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA X 131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA X 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA X 133 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA X 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA X 135 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA X 136 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA X 137 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA X 138 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA X 139 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA X 140 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA X 141 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA X 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA X 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL X 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT X 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL X 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL X 148 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL X 149 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL X 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL X 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL X 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL X 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL X 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL X 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL X 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL X 157 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL X 158 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL X 159 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL X 160 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YL0 RELATED DB: PDB REMARK 900 SAME PROTEIN IN 20% 2-PROPANOL DBREF 3RT5 X 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 X 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 X 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 X 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 X 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 X 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 X 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 X 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 X 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 X 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 X 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET NA X 130 1 HET NA X 131 1 HET NA X 132 1 HET NA X 133 1 HET NA X 134 1 HET NA X 135 1 HET NA X 136 1 HET NA X 137 1 HET IPA X 138 4 HET IPA X 139 4 HET IPA X 140 4 HET IPA X 141 4 HET IPA X 142 4 HET IPA X 143 4 HET POL X 145 4 HET ACT X 146 4 HET CL X 147 1 HET CL X 148 1 HET CL X 149 1 HET CL X 150 1 HET CL X 151 1 HET CL X 152 1 HET CL X 153 1 HET CL X 154 1 HET CL X 155 1 HET CL X 156 1 HET CL X 157 1 HET CL X 158 1 HET CL X 159 1 HET CL X 160 1 HETNAM NA SODIUM ION HETNAM IPA ISOPROPYL ALCOHOL HETNAM POL N-PROPANOL HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION HETSYN IPA 2-PROPANOL HETSYN POL 1-PROPONOL FORMUL 2 NA 8(NA 1+) FORMUL 10 IPA 6(C3 H8 O) FORMUL 16 POL C3 H8 O FORMUL 17 ACT C2 H3 O2 1- FORMUL 18 CL 14(CL 1-) FORMUL 32 HOH *87(H2 O) HELIX 1 1 GLY X 4 HIS X 15 1 12 HELIX 2 2 ASN X 19 TYR X 23 5 5 HELIX 3 3 SER X 24 ASN X 37 1 14 HELIX 4 4 PRO X 79 SER X 85 5 7 HELIX 5 5 ILE X 88 SER X 100 1 13 HELIX 6 6 ASN X 103 ALA X 107 5 5 HELIX 7 7 TRP X 108 CYS X 115 1 8 HELIX 8 8 ASP X 119 ARG X 125 5 7 SHEET 1 A 3 THR X 43 ARG X 45 0 SHEET 2 A 3 THR X 51 TYR X 53 -1 O ASP X 52 N ASN X 44 SHEET 3 A 3 ILE X 58 ASN X 59 -1 O ILE X 58 N TYR X 53 SSBOND 1 CYS X 6 CYS X 127 1555 1555 2.02 SSBOND 2 CYS X 30 CYS X 115 1555 1555 2.04 SSBOND 3 CYS X 64 CYS X 80 1555 1555 2.05 SSBOND 4 CYS X 76 CYS X 94 1555 1555 2.03 LINK NA NA X 130 O HOH X 230 1555 1555 2.38 LINK NA NA X 135 O HOH X 215 1555 1555 2.42 LINK NA NA X 133 O HOH X 214 1555 1555 2.43 LINK OD1 ASN X 27 NA NA X 132 1555 1555 2.51 LINK O ARG X 114 NA NA X 131 1555 1555 2.51 LINK O SER X 85 NA NA X 133 1555 1555 2.52 LINK NA NA X 136 O HOH X 172 1555 1555 2.57 LINK O ASP X 87 NA NA X 135 1555 1555 2.58 LINK O ASN X 37 NA NA X 136 1555 1555 2.62 LINK NA NA X 133 O HOH X 211 1555 1555 2.72 LINK O SER X 81 NA NA X 130 1555 1555 3.02 SITE 1 AC1 3 SER X 81 SER X 85 HOH X 230 SITE 1 AC2 4 ARG X 114 NA X 134 IPA X 143 HOH X 163 SITE 1 AC3 4 ASN X 27 GLY X 117 NA X 134 CL X 154 SITE 1 AC4 5 SER X 85 ASP X 87 ILE X 88 HOH X 211 SITE 2 AC4 5 HOH X 214 SITE 1 AC5 4 TRP X 111 ARG X 114 NA X 131 NA X 132 SITE 1 AC6 4 ASP X 87 THR X 89 ALA X 90 HOH X 215 SITE 1 AC7 4 ASN X 37 PHE X 38 ARG X 73 HOH X 172 SITE 1 AC8 5 VAL X 2 ASN X 65 GLY X 67 CL X 160 SITE 2 AC8 5 HOH X 221 SITE 1 AC9 4 ALA X 122 TRP X 123 IPA X 143 ACT X 146 SITE 1 BC1 9 VAL X 99 SER X 100 ASP X 101 GLY X 102 SITE 2 BC1 9 ASN X 103 GLY X 104 VAL X 109 CL X 156 SITE 3 BC1 9 HOH X 209 SITE 1 BC2 6 ASN X 65 SER X 72 ARG X 73 ASN X 74 SITE 2 BC2 6 HOH X 219 HOH X 241 SITE 1 BC3 5 ASN X 19 GLY X 22 PHE X 34 GLU X 35 SITE 2 BC3 5 HOH X 206 SITE 1 BC4 8 GLN X 57 ILE X 58 ASN X 59 TRP X 63 SITE 2 BC4 8 ALA X 107 TRP X 108 CL X 153 HOH X 235 SITE 1 BC5 7 PHE X 34 GLY X 117 TRP X 123 NA X 131 SITE 2 BC5 7 IPA X 138 ACT X 146 CL X 154 SITE 1 BC6 3 HIS X 15 ASN X 93 ARG X 128 SITE 1 BC7 4 GLY X 117 THR X 118 IPA X 138 IPA X 143 SITE 1 BC8 7 ASN X 65 GLY X 67 ARG X 68 THR X 69 SITE 2 BC8 7 SER X 72 HOH X 208 HOH X 220 SITE 1 BC9 3 SER X 24 GLY X 26 GLN X 121 SITE 1 CC1 1 ILE X 88 SITE 1 CC2 6 TYR X 53 GLY X 54 ILE X 55 LEU X 56 SITE 2 CC2 6 GLN X 57 SER X 91 SITE 1 CC3 2 ASN X 65 PRO X 79 SITE 1 CC4 6 GLY X 49 SER X 50 THR X 51 ASP X 66 SITE 2 CC4 6 ARG X 68 THR X 69 SITE 1 CC5 2 TRP X 63 IPA X 142 SITE 1 CC6 4 GLY X 117 THR X 118 NA X 132 IPA X 143 SITE 1 CC7 1 HOH X 218 SITE 1 CC8 5 TYR X 23 ALA X 110 ASN X 113 IPA X 139 SITE 2 CC8 5 HOH X 209 SITE 1 CC9 3 ASP X 48 SER X 50 ASN X 59 SITE 1 DC1 2 ARG X 73 ASN X 74 SITE 1 DC2 1 LYS X 33 SITE 1 DC3 3 LYS X 1 VAL X 2 NA X 137 CRYST1 77.935 77.935 36.961 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012831 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012831 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027056 0.00000