PDB Short entry for 3RZW HEADER PROTEIN BINDING 12-MAY-11 3RZW TITLE CRYSTAL STRUCTURE OF THE MONOBODY YSMB-9 BOUND TO HUMAN SUMO1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONOBODY YSMB-9; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SMALL UBIQUITIN-RELATED MODIFIER 1; COMPND 7 CHAIN: C, D; COMPND 8 SYNONYM: SUMO-1, GAP-MODIFYING PROTEIN 1, GMP1, SMT3 HOMOLOG 3, COMPND 9 SENTRIN, UBIQUITIN-HOMOLOGY DOMAIN PROTEIN PIC1, UBIQUITIN-LIKE COMPND 10 PROTEIN SMT3C, SMT3C, UBIQUITIN-LIKE PROTEIN UBL1; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SUMO1, SMT3C, SMT3H3, UBL1, OK/SW-CL.43; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET24A DERIVED; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHFT2; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PET24A DERIVED; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PHFT2 KEYWDS BETA SANDWICH, BETA GRASP, ANTIBODY MIMIC, ENGINEERED BINDING KEYWDS 2 PROTEIN, POST-TRANSLATIONAL MODIFICATION, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR R.N.GILBRETH,S.KOIDE REVDAT 4 28-FEB-24 3RZW 1 REMARK SEQADV REVDAT 3 08-NOV-17 3RZW 1 REMARK REVDAT 2 23-MAY-12 3RZW 1 JRNL REVDAT 1 28-DEC-11 3RZW 0 JRNL AUTH A.KOIDE,J.WOJCIK,R.N.GILBRETH,R.J.HOEY,S.KOIDE JRNL TITL TEACHING AN OLD SCAFFOLD NEW TRICKS: MONOBODIES CONSTRUCTED JRNL TITL 2 USING ALTERNATIVE SURFACES OF THE FN3 SCAFFOLD. JRNL REF J.MOL.BIOL. V. 415 393 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22198408 JRNL DOI 10.1016/J.JMB.2011.12.019 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 22699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1217 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1616 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2654 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.31000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 1.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.184 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.078 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2736 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3719 ; 1.828 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 329 ; 7.642 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;36.302 ;24.355 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 446 ;17.526 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;15.035 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 403 ; 0.137 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2084 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1647 ; 0.906 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2681 ; 1.662 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1089 ; 2.556 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1037 ; 4.013 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 54.267 20.224 3.021 REMARK 3 T TENSOR REMARK 3 T11: 0.0352 T22: 0.0533 REMARK 3 T33: 0.0418 T12: -0.0113 REMARK 3 T13: -0.0194 T23: 0.0397 REMARK 3 L TENSOR REMARK 3 L11: 4.4612 L22: 0.7994 REMARK 3 L33: 3.0261 L12: 0.4425 REMARK 3 L13: -2.6943 L23: -0.2765 REMARK 3 S TENSOR REMARK 3 S11: 0.0395 S12: -0.1701 S13: -0.0020 REMARK 3 S21: 0.0447 S22: -0.0240 S23: 0.0075 REMARK 3 S31: -0.0092 S32: 0.1546 S33: -0.0154 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 90 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0020 2.5920 -25.6260 REMARK 3 T TENSOR REMARK 3 T11: 0.0369 T22: 0.0347 REMARK 3 T33: 0.0420 T12: 0.0132 REMARK 3 T13: -0.0072 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 1.2566 L22: 6.0394 REMARK 3 L33: 2.5759 L12: -1.1507 REMARK 3 L13: 0.9248 L23: -3.0432 REMARK 3 S TENSOR REMARK 3 S11: -0.0736 S12: 0.0000 S13: 0.0327 REMARK 3 S21: 0.1781 S22: 0.0319 S23: -0.0390 REMARK 3 S31: -0.1114 S32: -0.0176 S33: 0.0416 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 20 C 94 REMARK 3 ORIGIN FOR THE GROUP (A): 33.592 -18.681 -13.895 REMARK 3 T TENSOR REMARK 3 T11: 0.0550 T22: 0.0239 REMARK 3 T33: 0.0275 T12: 0.0088 REMARK 3 T13: -0.0382 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 3.0221 L22: 3.5138 REMARK 3 L33: 4.0665 L12: 0.6550 REMARK 3 L13: -0.2748 L23: 0.6802 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: -0.0088 S13: 0.0061 REMARK 3 S21: 0.0118 S22: 0.0198 S23: -0.0327 REMARK 3 S31: -0.0414 S32: -0.0912 S33: -0.0154 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 20 D 97 REMARK 3 ORIGIN FOR THE GROUP (A): 33.7360 29.6300 -14.6430 REMARK 3 T TENSOR REMARK 3 T11: 0.0281 T22: 0.0933 REMARK 3 T33: 0.0109 T12: -0.0120 REMARK 3 T13: -0.0060 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 3.7968 L22: 3.4014 REMARK 3 L33: 1.4269 L12: -1.5505 REMARK 3 L13: 0.4963 L23: 0.0534 REMARK 3 S TENSOR REMARK 3 S11: 0.0455 S12: 0.0496 S13: 0.0753 REMARK 3 S21: 0.0151 S22: 0.0060 S23: -0.0147 REMARK 3 S31: -0.0007 S32: 0.0147 S33: -0.0514 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RZW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065584. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23917 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG-8000, 0.1M IMIDAZOLE, PH 8.0, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.28900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.28900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.67350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.91450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.67350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.91450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.28900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.67350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.91450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.28900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.67350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.91450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 SER A 0 REMARK 465 VAL A 1 REMARK 465 GLY B -4 REMARK 465 SER B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 SER B 0 REMARK 465 VAL B 1 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 ASP C 3 REMARK 465 GLN C 4 REMARK 465 GLU C 5 REMARK 465 ALA C 6 REMARK 465 LYS C 7 REMARK 465 PRO C 8 REMARK 465 SER C 9 REMARK 465 THR C 10 REMARK 465 GLU C 11 REMARK 465 ASP C 12 REMARK 465 LEU C 13 REMARK 465 GLY C 14 REMARK 465 ASP C 15 REMARK 465 LYS C 16 REMARK 465 LYS C 17 REMARK 465 GLU C 18 REMARK 465 GLY C 19 REMARK 465 THR C 95 REMARK 465 GLY C 96 REMARK 465 GLY C 97 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 ASP D 3 REMARK 465 GLN D 4 REMARK 465 GLU D 5 REMARK 465 ALA D 6 REMARK 465 LYS D 7 REMARK 465 PRO D 8 REMARK 465 SER D 9 REMARK 465 THR D 10 REMARK 465 GLU D 11 REMARK 465 ASP D 12 REMARK 465 LEU D 13 REMARK 465 GLY D 14 REMARK 465 ASP D 15 REMARK 465 LYS D 16 REMARK 465 LYS D 17 REMARK 465 GLU D 18 REMARK 465 GLY D 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 78 3.86 80.59 REMARK 500 SER C 31 -10.47 73.85 REMARK 500 ASP D 30 -29.06 -3.02 REMARK 500 SER D 31 -7.65 59.52 REMARK 500 SER D 32 141.45 -28.07 REMARK 500 GLU D 84 124.00 -39.10 REMARK 500 GLU D 85 3.54 81.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN D 29 ASP D 30 144.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 91 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 92 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UYO RELATED DB: PDB DBREF 3RZW C 1 97 UNP P63165 SUMO1_HUMAN 1 97 DBREF 3RZW D 1 97 UNP P63165 SUMO1_HUMAN 1 97 DBREF 3RZW A -4 90 PDB 3RZW 3RZW -4 90 DBREF 3RZW B -4 90 PDB 3RZW 3RZW -4 90 SEQADV 3RZW GLY C -1 UNP P63165 EXPRESSION TAG SEQADV 3RZW SER C 0 UNP P63165 EXPRESSION TAG SEQADV 3RZW ALA C 52 UNP P63165 CYS 52 ENGINEERED MUTATION SEQADV 3RZW GLY D -1 UNP P63165 EXPRESSION TAG SEQADV 3RZW SER D 0 UNP P63165 EXPRESSION TAG SEQADV 3RZW ALA D 52 UNP P63165 CYS 52 ENGINEERED MUTATION SEQRES 1 A 95 GLY SER GLY SER SER VAL SER SER VAL PRO THR LYS LEU SEQRES 2 A 95 GLU VAL VAL ALA ALA THR PRO THR SER LEU LEU ILE SER SEQRES 3 A 95 TRP ASP ALA GLY TYR TRP PHE ILE ASP TYR TYR ARG ILE SEQRES 4 A 95 THR TYR GLY GLU THR GLY GLY ASN SER PRO VAL GLN GLU SEQRES 5 A 95 PHE THR VAL PRO GLY TYR SER SER THR ALA THR ILE SER SEQRES 6 A 95 GLY LEU SER PRO GLY VAL ASP TYR THR ILE THR VAL TYR SEQRES 7 A 95 ALA TYR TYR ASP ASN TYR GLY TRP SER PRO ILE SER ILE SEQRES 8 A 95 ASN TYR ARG THR SEQRES 1 B 95 GLY SER GLY SER SER VAL SER SER VAL PRO THR LYS LEU SEQRES 2 B 95 GLU VAL VAL ALA ALA THR PRO THR SER LEU LEU ILE SER SEQRES 3 B 95 TRP ASP ALA GLY TYR TRP PHE ILE ASP TYR TYR ARG ILE SEQRES 4 B 95 THR TYR GLY GLU THR GLY GLY ASN SER PRO VAL GLN GLU SEQRES 5 B 95 PHE THR VAL PRO GLY TYR SER SER THR ALA THR ILE SER SEQRES 6 B 95 GLY LEU SER PRO GLY VAL ASP TYR THR ILE THR VAL TYR SEQRES 7 B 95 ALA TYR TYR ASP ASN TYR GLY TRP SER PRO ILE SER ILE SEQRES 8 B 95 ASN TYR ARG THR SEQRES 1 C 99 GLY SER MET SER ASP GLN GLU ALA LYS PRO SER THR GLU SEQRES 2 C 99 ASP LEU GLY ASP LYS LYS GLU GLY GLU TYR ILE LYS LEU SEQRES 3 C 99 LYS VAL ILE GLY GLN ASP SER SER GLU ILE HIS PHE LYS SEQRES 4 C 99 VAL LYS MET THR THR HIS LEU LYS LYS LEU LYS GLU SER SEQRES 5 C 99 TYR ALA GLN ARG GLN GLY VAL PRO MET ASN SER LEU ARG SEQRES 6 C 99 PHE LEU PHE GLU GLY GLN ARG ILE ALA ASP ASN HIS THR SEQRES 7 C 99 PRO LYS GLU LEU GLY MET GLU GLU GLU ASP VAL ILE GLU SEQRES 8 C 99 VAL TYR GLN GLU GLN THR GLY GLY SEQRES 1 D 99 GLY SER MET SER ASP GLN GLU ALA LYS PRO SER THR GLU SEQRES 2 D 99 ASP LEU GLY ASP LYS LYS GLU GLY GLU TYR ILE LYS LEU SEQRES 3 D 99 LYS VAL ILE GLY GLN ASP SER SER GLU ILE HIS PHE LYS SEQRES 4 D 99 VAL LYS MET THR THR HIS LEU LYS LYS LEU LYS GLU SER SEQRES 5 D 99 TYR ALA GLN ARG GLN GLY VAL PRO MET ASN SER LEU ARG SEQRES 6 D 99 PHE LEU PHE GLU GLY GLN ARG ILE ALA ASP ASN HIS THR SEQRES 7 D 99 PRO LYS GLU LEU GLY MET GLU GLU GLU ASP VAL ILE GLU SEQRES 8 D 99 VAL TYR GLN GLU GLN THR GLY GLY HET GOL B 91 6 HET GOL B 92 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *138(H2 O) HELIX 1 1 LEU C 44 GLY C 56 1 13 HELIX 2 2 PRO C 58 ASN C 60 5 3 HELIX 3 3 THR C 76 GLY C 81 1 6 HELIX 4 4 LEU D 44 GLY D 56 1 13 HELIX 5 5 PRO D 58 ASN D 60 5 3 HELIX 6 6 THR D 76 GLY D 81 1 6 SHEET 1 A 3 THR A 6 THR A 14 0 SHEET 2 A 3 SER A 17 ASP A 23 -1 O LEU A 19 N VAL A 11 SHEET 3 A 3 THR A 56 ILE A 59 -1 O ILE A 59 N LEU A 18 SHEET 1 B 4 GLN A 46 PRO A 51 0 SHEET 2 B 4 TYR A 31 GLU A 38 -1 N ILE A 34 O PHE A 48 SHEET 3 B 4 ASP A 67 TYR A 76 -1 O THR A 69 N GLY A 37 SHEET 4 B 4 TYR A 79 GLY A 80 -1 O TYR A 79 N TYR A 76 SHEET 1 C 4 GLN A 46 PRO A 51 0 SHEET 2 C 4 TYR A 31 GLU A 38 -1 N ILE A 34 O PHE A 48 SHEET 3 C 4 ASP A 67 TYR A 76 -1 O THR A 69 N GLY A 37 SHEET 4 C 4 ILE A 84 ARG A 89 -1 O ILE A 86 N ILE A 70 SHEET 1 D 3 THR B 6 THR B 14 0 SHEET 2 D 3 SER B 17 ASP B 23 -1 O SER B 17 N THR B 14 SHEET 3 D 3 THR B 56 ILE B 59 -1 O ALA B 57 N ILE B 20 SHEET 1 E 4 GLN B 46 PRO B 51 0 SHEET 2 E 4 TYR B 31 GLU B 38 -1 N TYR B 36 O GLN B 46 SHEET 3 E 4 ASP B 67 TYR B 76 -1 O THR B 69 N GLY B 37 SHEET 4 E 4 TYR B 79 GLY B 80 -1 O TYR B 79 N TYR B 76 SHEET 1 F 4 GLN B 46 PRO B 51 0 SHEET 2 F 4 TYR B 31 GLU B 38 -1 N TYR B 36 O GLN B 46 SHEET 3 F 4 ASP B 67 TYR B 76 -1 O THR B 69 N GLY B 37 SHEET 4 F 4 ILE B 84 ARG B 89 -1 O TYR B 88 N TYR B 68 SHEET 1 G 5 GLU C 33 LYS C 39 0 SHEET 2 G 5 TYR C 21 GLY C 28 -1 N LEU C 24 O PHE C 36 SHEET 3 G 5 ASP C 86 GLN C 92 1 O ILE C 88 N LYS C 25 SHEET 4 G 5 LEU C 62 PHE C 66 -1 N LEU C 65 O GLU C 89 SHEET 5 G 5 GLN C 69 ARG C 70 -1 O GLN C 69 N PHE C 66 SHEET 1 H 5 GLU D 33 LYS D 39 0 SHEET 2 H 5 TYR D 21 GLY D 28 -1 N VAL D 26 O ILE D 34 SHEET 3 H 5 VAL D 87 GLN D 92 1 O ILE D 88 N LYS D 25 SHEET 4 H 5 LEU D 62 PHE D 66 -1 N LEU D 65 O GLU D 89 SHEET 5 H 5 GLN D 69 ARG D 70 -1 O GLN D 69 N PHE D 66 CISPEP 1 VAL A 4 PRO A 5 0 0.32 CISPEP 2 VAL B 4 PRO B 5 0 -2.68 SITE 1 AC1 2 SER B 17 LEU B 18 SITE 1 AC2 5 TYR B 36 THR B 58 SER B 60 GLN D 92 SITE 2 AC2 5 GLN D 94 CRYST1 93.347 97.829 96.578 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010713 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010222 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010354 0.00000