PDB Short entry for 3S5O HEADER LYASE 23-MAY-11 3S5O TITLE CRYSTAL STRUCTURE OF HUMAN 4-HYDROXY-2-OXOGLUTARATE ALDOLASE BOUND TO TITLE 2 PYRUVATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXY-2-OXOGLUTARATE ALDOLASE, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DIHYDRODIPICOLINATE SYNTHASE-LIKE, DHDPS-LIKE PROTEIN, 2- COMPND 5 KETO-4-HYDROXYGLUTARATE ALDOLASE, KHG-ALDOLASE, PROTEIN 569272; COMPND 6 EC: 4.1.3.16; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: C10ORF65, DHDPSL, HOGA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMAL KEYWDS ALDOLASE, BETA BARREL, SCHIFF BASE, HYDROXYPROLINE METABOLISM, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR T.J.RIEDEL,W.T.LOWTHER REVDAT 1 26-OCT-11 3S5O 0 JRNL AUTH T.J.RIEDEL,L.C.JOHNSON,J.KNIGHT,R.R.HANTGAN,R.P.HOLMES, JRNL AUTH 2 W.T.LOWTHER JRNL TITL STRUCTURAL AND BIOCHEMICAL STUDIES OF HUMAN JRNL TITL 2 4-HYDROXY-2-OXOGLUTARATE ALDOLASE: IMPLICATIONS FOR JRNL TITL 3 HYDROXYPROLINE METABOLISM IN PRIMARY HYPEROXALURIA. JRNL REF PLOS ONE V. 6 26021 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 21998747 JRNL DOI 10.1371/JOURNAL.PONE.0026021 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0063 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 45315 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2287 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3119 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 194 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2246 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 211 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : 0.78000 REMARK 3 B12 (A**2) : -0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.330 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2330 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3156 ; 1.429 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 299 ; 5.712 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;40.151 ;23.617 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 370 ;14.222 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;16.999 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 357 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1754 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1476 ; 0.707 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2374 ; 1.327 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 854 ; 2.277 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 779 ; 3.771 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3S5O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-11. REMARK 100 THE RCSB ID CODE IS RCSB065792. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45370 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 35.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.820 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : 0.35400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, KSCN, BIS TRIS PROPANE, REMARK 280 TCEP, ETHELYENE GLYCOL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.12933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.25867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.12933 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.25867 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.12933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 72.25867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 36.12933 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 72.25867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 70.61500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 122.30877 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 144.51733 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 70.61500 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 122.30877 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 144.51733 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 21 REMARK 465 PRO A 22 REMARK 465 LEU A 23 REMARK 465 GLY A 24 REMARK 465 SER A 25 REMARK 465 ALA A 26 REMARK 465 SER A 27 REMARK 465 GLY A 28 REMARK 465 GLU A 29 REMARK 465 GLY A 30 REMARK 465 LYS A 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 139 -7.23 -146.53 REMARK 500 TYR A 141 55.28 -92.83 REMARK 500 PHE A 217 107.16 -161.35 REMARK 500 LEU A 246 51.26 -118.35 REMARK 500 THR A 280 -97.32 -126.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 328 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 192 O REMARK 620 2 SER A 187 O 101.9 REMARK 620 3 HIS A 189 O 81.1 90.5 REMARK 620 4 ASP A 216 O 88.3 100.0 166.4 REMARK 620 5 HOH A 371 O 98.0 159.3 86.9 86.2 REMARK 620 6 HOH A 342 O 170.2 73.9 107.6 83.8 87.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 328 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3S5N RELATED DB: PDB DBREF 3S5O A 26 327 UNP Q86XE5 HOGA1_HUMAN 26 327 SEQADV 3S5O GLY A 21 UNP Q86XE5 EXPRESSION TAG SEQADV 3S5O PRO A 22 UNP Q86XE5 EXPRESSION TAG SEQADV 3S5O LEU A 23 UNP Q86XE5 EXPRESSION TAG SEQADV 3S5O GLY A 24 UNP Q86XE5 EXPRESSION TAG SEQADV 3S5O SER A 25 UNP Q86XE5 EXPRESSION TAG SEQRES 1 A 307 GLY PRO LEU GLY SER ALA SER GLY GLU GLY LYS LYS VAL SEQRES 2 A 307 ASP ILE ALA GLY ILE TYR PRO PRO VAL THR THR PRO PHE SEQRES 3 A 307 THR ALA THR ALA GLU VAL ASP TYR GLY LYS LEU GLU GLU SEQRES 4 A 307 ASN LEU HIS LYS LEU GLY THR PHE PRO PHE ARG GLY PHE SEQRES 5 A 307 VAL VAL GLN GLY SER ASN GLY GLU PHE PRO PHE LEU THR SEQRES 6 A 307 SER SER GLU ARG LEU GLU VAL VAL SER ARG VAL ARG GLN SEQRES 7 A 307 ALA MET PRO LYS ASN ARG LEU LEU LEU ALA GLY SER GLY SEQRES 8 A 307 CYS GLU SER THR GLN ALA THR VAL GLU MET THR VAL SER SEQRES 9 A 307 MET ALA GLN VAL GLY ALA ASP ALA ALA MET VAL VAL THR SEQRES 10 A 307 PRO CYS TYR TYR ARG GLY ARG MET SER SER ALA ALA LEU SEQRES 11 A 307 ILE HIS HIS TYR THR LYS VAL ALA ASP LEU SER PRO ILE SEQRES 12 A 307 PRO VAL VAL LEU TYR SER VAL PRO ALA ASN THR GLY LEU SEQRES 13 A 307 ASP LEU PRO VAL ASP ALA VAL VAL THR LEU SER GLN HIS SEQRES 14 A 307 PRO ASN ILE VAL GLY MET KPI ASP SER GLY GLY ASP VAL SEQRES 15 A 307 THR ARG ILE GLY LEU ILE VAL HIS LYS THR ARG LYS GLN SEQRES 16 A 307 ASP PHE GLN VAL LEU ALA GLY SER ALA GLY PHE LEU MET SEQRES 17 A 307 ALA SER TYR ALA LEU GLY ALA VAL GLY GLY VAL CYS ALA SEQRES 18 A 307 LEU ALA ASN VAL LEU GLY ALA GLN VAL CYS GLN LEU GLU SEQRES 19 A 307 ARG LEU CYS CYS THR GLY GLN TRP GLU ASP ALA GLN LYS SEQRES 20 A 307 LEU GLN HIS ARG LEU ILE GLU PRO ASN ALA ALA VAL THR SEQRES 21 A 307 ARG ARG PHE GLY ILE PRO GLY LEU LYS LYS ILE MET ASP SEQRES 22 A 307 TRP PHE GLY TYR TYR GLY GLY PRO CYS ARG ALA PRO LEU SEQRES 23 A 307 GLN GLU LEU SER PRO ALA GLU GLU GLU ALA LEU ARG MET SEQRES 24 A 307 ASP PHE THR SER ASN GLY TRP LEU MODRES 3S5O KPI A 196 LYS HET KPI A 196 14 HET EDO A 1 4 HET EDO A 2 4 HET EDO A 3 4 HET EDO A 4 4 HET EDO A 5 4 HET EDO A 6 4 HET K A 328 1 HETNAM KPI (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-PROPAN-2-YLIDENE) HETNAM 2 KPI AMINO]HEXANOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM K POTASSIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 KPI C9 H16 N2 O4 FORMUL 2 EDO 6(C2 H6 O2) FORMUL 8 K K 1+ FORMUL 9 HOH *211(H2 O) HELIX 1 1 ASP A 53 GLY A 65 1 13 HELIX 2 2 GLY A 76 LEU A 84 5 9 HELIX 3 3 THR A 85 ALA A 99 1 15 HELIX 4 4 SER A 114 VAL A 128 1 15 HELIX 5 5 TYR A 141 MET A 145 5 5 HELIX 6 6 SER A 146 SER A 161 1 16 HELIX 7 7 VAL A 170 GLY A 175 1 6 HELIX 8 8 PRO A 179 GLN A 188 1 10 HELIX 9 9 ASP A 201 THR A 212 1 12 HELIX 10 10 SER A 223 GLY A 225 5 3 HELIX 11 11 PHE A 226 GLY A 234 1 9 HELIX 12 12 ALA A 241 VAL A 245 5 5 HELIX 13 13 LEU A 246 THR A 259 1 14 HELIX 14 14 GLN A 261 VAL A 279 1 19 HELIX 15 15 PHE A 283 GLY A 296 1 14 HELIX 16 16 SER A 310 SER A 323 1 14 SHEET 1 A 2 GLY A 37 TYR A 39 0 SHEET 2 A 2 GLY A 237 VAL A 239 1 O GLY A 238 N TYR A 39 SHEET 1 B 6 GLY A 71 VAL A 74 0 SHEET 2 B 6 LEU A 105 GLY A 109 1 O GLY A 109 N VAL A 74 SHEET 3 B 6 ALA A 132 VAL A 136 1 O ALA A 132 N ALA A 108 SHEET 4 B 6 VAL A 165 SER A 169 1 O VAL A 166 N ALA A 133 SHEET 5 B 6 ILE A 192 ASP A 197 1 O KPI A 196 N LEU A 167 SHEET 6 B 6 GLN A 218 ALA A 221 1 O LEU A 220 N MET A 195 LINK C MET A 195 N KPI A 196 1555 1555 1.51 LINK C KPI A 196 N ASP A 197 1555 1555 1.45 LINK O ILE A 192 K K A 328 1555 1555 2.56 LINK O SER A 187 K K A 328 1555 1555 2.68 LINK O HIS A 189 K K A 328 1555 1555 2.69 LINK O ASP A 216 K K A 328 1555 1555 2.71 LINK K K A 328 O HOH A 371 1555 1555 2.73 LINK K K A 328 O HOH A 342 1555 1555 2.96 CISPEP 1 ALA A 304 PRO A 305 0 15.45 SITE 1 AC1 4 GLU A 59 LYS A 63 HOH A 527 HOH A 533 SITE 1 AC2 6 LYS A 63 PHE A 295 GLY A 296 TYR A 297 SITE 2 AC2 6 HOH A 526 HOH A 527 SITE 1 AC3 8 EDO A 6 TYR A 141 ARG A 144 GLY A 284 SITE 2 AC3 8 ILE A 285 PRO A 286 HOH A 478 HOH A 529 SITE 1 AC4 8 VAL A 42 THR A 43 PRO A 45 LEU A 57 SITE 2 AC4 8 ASN A 60 LEU A 64 ASN A 244 MET A 292 SITE 1 AC5 5 EDO A 3 SER A 77 ASN A 173 HOH A 341 SITE 2 AC5 5 HOH A 537 SITE 1 AC6 6 SER A 187 HIS A 189 ILE A 192 ASP A 216 SITE 2 AC6 6 HOH A 342 HOH A 371 CRYST1 141.230 141.230 108.388 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007081 0.004088 0.000000 0.00000 SCALE2 0.000000 0.008176 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009226 0.00000