PDB Short entry for 3S6D HEADER ISOMERASE 25-MAY-11 3S6D TITLE CRYSTAL STRUCTURE OF A PUTATIVE TRIOSEPHOSPHATE ISOMERASE FROM TITLE 2 COCCIDIOIDES IMMITIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TIM, TRIOSE-PHOSPHATE ISOMERASE; COMPND 5 EC: 5.3.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COCCIDIOIDES IMMITIS RS; SOURCE 3 ORGANISM_COMMON: VALLEY FEVER FUNGUS; SOURCE 4 ORGANISM_TAXID: 246410; SOURCE 5 STRAIN: RS; SOURCE 6 GENE: CIMG_07933; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PAVA0421 KEYWDS SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, KEYWDS 2 PATHOGENIC FUNGUS, EUKARYOTE, TIM BARREL, TRIOSEPHOSPHATE ISOMERASE, KEYWDS 3 TPI, DIHYDROXYACETONE PHOSPHATE, D-GLYCERALDEHYDE 3-PHOSPHATE, KEYWDS 4 GLYCOLYSIS, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 13-SEP-23 3S6D 1 REMARK SEQADV LINK REVDAT 1 22-JUN-11 3S6D 0 JRNL AUTH T.E.EDWARDS,J.ABENDROTH, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 3 (SSGCID) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE TRIOSEPHOSPHATE ISOMERASE JRNL TITL 2 FROM COCCIDIOIDES IMMITIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 14145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 720 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 853 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2011 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : -0.92000 REMARK 3 B33 (A**2) : 1.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.207 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.292 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2057 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2804 ; 1.380 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 269 ; 6.039 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;29.101 ;23.165 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 316 ;13.258 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;14.884 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 326 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1557 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1345 ; 0.746 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2154 ; 1.351 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 712 ; 2.133 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 649 ; 3.516 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5091 7.1768 4.9990 REMARK 3 T TENSOR REMARK 3 T11: 0.0783 T22: 0.0586 REMARK 3 T33: 0.0715 T12: -0.0043 REMARK 3 T13: 0.0076 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.0478 L22: 0.8452 REMARK 3 L33: 0.3407 L12: 0.1473 REMARK 3 L13: 0.0655 L23: -0.0900 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: -0.0028 S13: -0.0084 REMARK 3 S21: -0.0404 S22: 0.0042 S23: -0.0113 REMARK 3 S31: -0.0237 S32: 0.0244 S33: -0.0004 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8162 4.0566 23.4041 REMARK 3 T TENSOR REMARK 3 T11: 0.0531 T22: 0.0636 REMARK 3 T33: 0.0371 T12: 0.0033 REMARK 3 T13: -0.0061 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 0.7339 L22: 0.8057 REMARK 3 L33: 0.9173 L12: 0.6407 REMARK 3 L13: 0.2527 L23: 0.6003 REMARK 3 S TENSOR REMARK 3 S11: 0.0663 S12: -0.0825 S13: -0.0588 REMARK 3 S21: 0.0210 S22: -0.0599 S23: -0.0049 REMARK 3 S31: -0.0372 S32: -0.0222 S33: -0.0064 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 201 A 230 REMARK 3 ORIGIN FOR THE GROUP (A): 20.6729 16.4834 26.4377 REMARK 3 T TENSOR REMARK 3 T11: 0.0657 T22: 0.1078 REMARK 3 T33: 0.0159 T12: 0.0203 REMARK 3 T13: 0.0163 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.6603 L22: 5.2930 REMARK 3 L33: 1.4897 L12: 1.8631 REMARK 3 L13: 0.0890 L23: 0.4249 REMARK 3 S TENSOR REMARK 3 S11: 0.0501 S12: -0.0270 S13: 0.0796 REMARK 3 S21: 0.0702 S22: -0.0992 S23: 0.2190 REMARK 3 S31: -0.1519 S32: 0.0000 S33: 0.0491 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 231 A 288 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9297 17.6402 13.5294 REMARK 3 T TENSOR REMARK 3 T11: 0.0586 T22: 0.0714 REMARK 3 T33: 0.0880 T12: -0.0094 REMARK 3 T13: 0.0170 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.1217 L22: 0.9555 REMARK 3 L33: 0.9685 L12: -0.2212 REMARK 3 L13: 0.2356 L23: 0.0843 REMARK 3 S TENSOR REMARK 3 S11: -0.0684 S12: 0.0243 S13: 0.0218 REMARK 3 S21: 0.0630 S22: 0.0661 S23: -0.0733 REMARK 3 S31: -0.2069 S32: 0.1076 S33: 0.0023 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3S6D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065817. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9765 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14215 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 3M9Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: COIMA.00717.A.A1 PS00678 AT 27 MG/ML REMARK 280 AGAINST PACT SCREEN F5, 0.2 M NANO3, 0.1 M BISTRIS PROPANE PH REMARK 280 6.5, 20% PEG 3350 WITH 20% ETHYLENE GLYCOL AS CRYO-PROTECTANT, REMARK 280 CRYSTAL TRACKING ID 221044E12, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 65.03500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.23000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 65.03500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.23000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 LEU A 5 REMARK 465 ALA A 6 REMARK 465 GLY A 7 REMARK 465 PRO A 82 REMARK 465 GLN A 83 REMARK 465 ASP A 84 REMARK 465 ALA A 85 REMARK 465 ASP A 86 REMARK 465 THR A 87 REMARK 465 GLY A 208 REMARK 465 LYS A 209 REMARK 465 PRO A 210 REMARK 465 GLN A 211 REMARK 465 PRO A 212 REMARK 465 ARG A 289 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 ARG A 42 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 48 CG CD OE1 NE2 REMARK 470 ARG A 51 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 53 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 PRO A 88 CG CD REMARK 470 ARG A 116 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 139 CG CD OE1 NE2 REMARK 470 ILE A 207 CG1 CG2 CD1 REMARK 470 ARG A 214 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 216 CG OD1 OD2 REMARK 470 ARG A 269 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 LYS A 279 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 314 O HOH A 376 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 23 -132.18 45.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 290 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 109 OE2 REMARK 620 2 HOH A 359 O 78.0 REMARK 620 3 HOH A 360 O 85.8 74.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 290 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: COIMA.00717.A RELATED DB: TARGETDB DBREF 3S6D A 1 289 UNP P0CL22 TPIS_COCIM 1 289 SEQADV 3S6D MET A -20 UNP P0CL22 EXPRESSION TAG SEQADV 3S6D ALA A -19 UNP P0CL22 EXPRESSION TAG SEQADV 3S6D HIS A -18 UNP P0CL22 EXPRESSION TAG SEQADV 3S6D HIS A -17 UNP P0CL22 EXPRESSION TAG SEQADV 3S6D HIS A -16 UNP P0CL22 EXPRESSION TAG SEQADV 3S6D HIS A -15 UNP P0CL22 EXPRESSION TAG SEQADV 3S6D HIS A -14 UNP P0CL22 EXPRESSION TAG SEQADV 3S6D HIS A -13 UNP P0CL22 EXPRESSION TAG SEQADV 3S6D MET A -12 UNP P0CL22 EXPRESSION TAG SEQADV 3S6D GLY A -11 UNP P0CL22 EXPRESSION TAG SEQADV 3S6D THR A -10 UNP P0CL22 EXPRESSION TAG SEQADV 3S6D LEU A -9 UNP P0CL22 EXPRESSION TAG SEQADV 3S6D GLU A -8 UNP P0CL22 EXPRESSION TAG SEQADV 3S6D ALA A -7 UNP P0CL22 EXPRESSION TAG SEQADV 3S6D GLN A -6 UNP P0CL22 EXPRESSION TAG SEQADV 3S6D THR A -5 UNP P0CL22 EXPRESSION TAG SEQADV 3S6D GLN A -4 UNP P0CL22 EXPRESSION TAG SEQADV 3S6D GLY A -3 UNP P0CL22 EXPRESSION TAG SEQADV 3S6D PRO A -2 UNP P0CL22 EXPRESSION TAG SEQADV 3S6D GLY A -1 UNP P0CL22 EXPRESSION TAG SEQADV 3S6D SER A 0 UNP P0CL22 EXPRESSION TAG SEQRES 1 A 310 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 310 ALA GLN THR GLN GLY PRO GLY SER MET ALA SER ALA LEU SEQRES 3 A 310 ALA GLY PRO ARG PHE PRO PRO LEU PRO LYS THR LEU LEU SEQRES 4 A 310 ILE ILE SER LEU LYS MET TYR PHE THR PRO SER ARG THR SEQRES 5 A 310 ILE ASP TYR ILE GLN GLY LEU LEU GLU PRO ARG ASN ASP SEQRES 6 A 310 ILE ILE ARG GLN GLU ASN ARG SER ARG LEU LEU LEU ALA SEQRES 7 A 310 LEU ILE PRO ASP PHE LEU THR ILE TYR PRO CYS SER GLU SEQRES 8 A 310 ALA ILE LYS GLU PHE GLU SER ASN LEU ALA ALA PRO GLN SEQRES 9 A 310 ASP ALA ASP THR PRO PRO PRO LEU LEU LEU GLY ALA GLN SEQRES 10 A 310 ASP CYS PHE TRP ASP SER LEU GLY PRO TYR THR GLY GLU SEQRES 11 A 310 ILE SER PRO VAL CYS LEU ARG ASP MET ASN VAL SER ILE SEQRES 12 A 310 VAL GLU LEU GLY HIS ALA GLU ARG ARG ALA ILE PHE GLY SEQRES 13 A 310 GLU THR ASP GLN GLN VAL ALA ARG LYS ALA ALA ALA ALA SEQRES 14 A 310 ALA ASP GLN GLY LEU ILE PRO LEU VAL CYS ILE GLY GLU SEQRES 15 A 310 VAL SER THR LEU GLY PRO ILE VAL SER GLU ALA ILE GLY SEQRES 16 A 310 ARG ALA VAL GLY GLU CYS GLU ALA GLN ILE ARG PRO VAL SEQRES 17 A 310 LEU GLU ALA LEU PRO ARG ASP ALA PRO VAL ILE PHE ALA SEQRES 18 A 310 TYR GLU PRO VAL TRP ALA ILE GLY LYS PRO GLN PRO ALA SEQRES 19 A 310 ARG VAL ASP HIS VAL GLY ALA VAL VAL SER GLY ILE ARG SEQRES 20 A 310 SER VAL ILE GLU ARG ILE ASP ARG HIS ARG LYS GLY GLU SEQRES 21 A 310 VAL ARG ILE LEU TYR GLY GLY SER ALA GLY PRO GLY LEU SEQRES 22 A 310 TRP GLY PRO GLY GLY LEU GLY LYS GLU VAL ASP GLY MET SEQRES 23 A 310 PHE LEU GLY ARG PHE ALA HIS ASP ILE GLU GLY VAL ARG SEQRES 24 A 310 LYS VAL VAL ARG GLU VAL GLU GLU SER LEU ARG HET NA A 290 1 HETNAM NA SODIUM ION FORMUL 2 NA NA 1+ FORMUL 3 HOH *146(H2 O) HELIX 1 1 THR A 27 GLU A 40 1 14 HELIX 2 2 PRO A 41 ASP A 44 5 4 HELIX 3 3 ARG A 47 ARG A 51 5 5 HELIX 4 4 ASP A 61 LEU A 63 5 3 HELIX 5 5 THR A 64 SER A 77 1 14 HELIX 6 6 SER A 111 MET A 118 1 8 HELIX 7 7 HIS A 127 GLY A 135 1 9 HELIX 8 8 THR A 137 GLN A 151 1 15 HELIX 9 9 ILE A 168 LEU A 191 1 24 HELIX 10 10 PRO A 203 ILE A 207 5 5 HELIX 11 11 ARG A 214 ARG A 234 1 21 HELIX 12 12 GLY A 257 GLU A 261 5 5 HELIX 13 13 ARG A 269 HIS A 272 5 4 HELIX 14 14 ASP A 273 LEU A 288 1 16 SHEET 1 A 9 THR A 16 SER A 21 0 SHEET 2 A 9 LEU A 54 ILE A 59 1 O ILE A 59 N ILE A 20 SHEET 3 A 9 LEU A 92 ALA A 95 1 O LEU A 92 N LEU A 56 SHEET 4 A 9 ILE A 122 LEU A 125 1 O GLU A 124 N ALA A 95 SHEET 5 A 9 ILE A 154 ILE A 159 1 O LEU A 156 N VAL A 123 SHEET 6 A 9 VAL A 197 TYR A 201 1 O ALA A 200 N ILE A 159 SHEET 7 A 9 VAL A 240 ALA A 248 1 O GLY A 245 N TYR A 201 SHEET 8 A 9 GLY A 264 LEU A 267 1 O GLY A 264 N TYR A 244 SHEET 9 A 9 THR A 16 SER A 21 1 N ILE A 19 O MET A 265 LINK OE2 GLU A 109 NA NA A 290 1555 1555 3.06 LINK NA NA A 290 O HOH A 359 1555 1555 2.52 LINK NA NA A 290 O HOH A 360 1555 1555 2.36 SITE 1 AC1 3 GLU A 109 HOH A 359 HOH A 360 CRYST1 130.070 42.460 50.210 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007688 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023552 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019916 0.00000