PDB Short entry for 3S6F HEADER TRANSFERASE 25-MAY-11 3S6F TITLE CRYSTAL STRUCTURE OF A PUTATIVE ACETYLTRANSFERASE (DR_1678) FROM TITLE 2 DEINOCOCCUS RADIODURANS R1 AT 1.19 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299; SOURCE 4 GENE: DR_1678; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS ACYL-COA N-ACYLTRANSFERASES, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 3S6F 1 REMARK SEQADV LINK REVDAT 3 25-OCT-17 3S6F 1 REMARK REVDAT 2 24-DEC-14 3S6F 1 TITLE REVDAT 1 06-JUL-11 3S6F 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL ACETYLTRANSFERASE JRNL TITL 2 (DR_1678) FROM DEINOCOCCUS RADIODURANS AT 1.19 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 63421 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.150 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3215 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.22 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4381 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 238 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1111 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 236 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.031 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.030 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.018 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.894 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1379 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 929 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1915 ; 1.833 ; 2.058 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2263 ; 1.040 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 176 ; 6.394 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 62 ;34.078 ;22.742 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 214 ;12.545 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.376 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 204 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1538 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 285 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 792 ; 1.653 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 318 ; 0.820 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1293 ; 2.471 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 587 ; 3.344 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 612 ; 4.755 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2308 ; 1.591 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 255 ; 9.935 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2262 ; 4.691 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 4. COENZYME A (COA) HAS BEEN MODELED BASED ON REMARK 3 DENSITY. 5. THERE IS SOME UNMODELED DENSITY NEAR COA SUGGESTING REMARK 3 THE PRESENCE OF A SMALL MOLECULE LIGAND. REMARK 4 REMARK 4 3S6F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065819. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97944,0.97916 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HO RIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE JUNE 12 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63440 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.190 REMARK 200 RESOLUTION RANGE LOW (A) : 39.253 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.52500 REMARK 200 R SYM FOR SHELL (I) : 0.52500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CA(OAC)2, 10.0% PEG-8000, 0.1M REMARK 280 IMIDAZOLE PH 8.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.75550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 25.75550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.58400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.26200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.58400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.26200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.75550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.58400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.26200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 25.75550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.58400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.26200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE REMARK 300 ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN REMARK 300 SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 75.16800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 77.26650 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLU A 144 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 95 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 2 -45.05 -135.33 REMARK 500 LEU A 71 -32.94 -134.99 REMARK 500 ASP A 103 40.24 -88.29 REMARK 500 ASP A 103 43.51 -90.72 REMARK 500 ALA A 127 -159.74 -138.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 86 O REMARK 620 2 SER A 86 OG 72.8 REMARK 620 3 HOH A 243 O 86.6 80.7 REMARK 620 4 HOH A 389 O 75.2 147.3 104.2 REMARK 620 5 HOH A 390 O 143.8 140.1 109.5 69.6 REMARK 620 6 HOH A 391 O 142.4 70.8 78.6 141.9 73.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 145 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 211 O REMARK 620 2 HOH A 221 O 79.4 REMARK 620 3 HOH A 231 O 82.8 136.4 REMARK 620 4 HOH A 242 O 74.9 70.8 140.6 REMARK 620 5 HOH A 305 O 145.6 87.1 126.5 70.8 REMARK 620 6 HOH A 385 O 80.2 142.3 71.0 73.5 92.3 REMARK 620 7 HOH A 388 O 111.5 75.7 74.4 144.1 95.3 141.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 376366 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3S6F A 1 144 UNP Q9RTS8 Q9RTS8_DEIRA 1 144 SEQADV 3S6F GLY A 0 UNP Q9RTS8 EXPRESSION TAG SEQRES 1 A 145 GLY MSE THR GLN ARG SER LEU ALA ASP ILE GLN PHE GLN SEQRES 2 A 145 THR THR LEU GLU GLY VAL THR PRO ALA GLN LEU GLY GLY SEQRES 3 A 145 PHE PHE GLU GLY TRP PRO ASN PRO PRO THR PRO GLU THR SEQRES 4 A 145 LEU TRP ARG ILE LEU ASP ARG ALA ALA VAL PHE VAL LEU SEQRES 5 A 145 ALA ARG THR PRO ASP GLY GLN VAL ILE GLY PHE VAL ASN SEQRES 6 A 145 ALA LEU SER ASP GLY ILE LEU ALA ALA SER ILE PRO LEU SEQRES 7 A 145 LEU GLU VAL GLN ALA GLY TRP ARG SER LEU GLY LEU GLY SEQRES 8 A 145 SER GLU LEU MSE ARG ARG VAL LEU THR GLU LEU GLY ASP SEQRES 9 A 145 LEU TYR MSE VAL ASP LEU SER CYS ASP ASP ASP VAL VAL SEQRES 10 A 145 PRO PHE TYR GLU ARG LEU GLY LEU LYS ARG ALA ASN ALA SEQRES 11 A 145 MSE PHE LEU ARG ARG TYR ASP ASN GLN ALA GLY ILE PRO SEQRES 12 A 145 ALA GLU MODRES 3S6F MSE A 1 MET SELENOMETHIONINE MODRES 3S6F MSE A 94 MET SELENOMETHIONINE MODRES 3S6F MSE A 106 MET SELENOMETHIONINE MODRES 3S6F MSE A 130 MET SELENOMETHIONINE HET MSE A 1 13 HET MSE A 94 8 HET MSE A 106 8 HET MSE A 130 8 HET COA A 200 96 HET CA A 145 1 HET CA A 201 1 HETNAM MSE SELENOMETHIONINE HETNAM COA COENZYME A HETNAM CA CALCIUM ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 COA C21 H36 N7 O16 P3 S FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *236(H2 O) HELIX 1 1 SER A 5 ILE A 9 5 5 HELIX 2 2 THR A 19 LEU A 23 5 5 HELIX 3 3 THR A 35 ALA A 46 1 12 HELIX 4 4 GLY A 88 GLY A 102 1 15 HELIX 5 5 ASP A 112 ASP A 114 5 3 HELIX 6 6 VAL A 115 LEU A 122 1 8 HELIX 7 7 ARG A 134 GLN A 138 5 5 SHEET 1 A 4 GLN A 10 GLN A 12 0 SHEET 2 A 4 VAL A 48 ARG A 53 -1 O ARG A 53 N GLN A 10 SHEET 3 A 4 VAL A 59 SER A 67 -1 O ILE A 60 N ALA A 52 SHEET 4 A 4 LEU A 78 VAL A 80 -1 O GLU A 79 N PHE A 62 SHEET 1 B 5 GLN A 10 GLN A 12 0 SHEET 2 B 5 VAL A 48 ARG A 53 -1 O ARG A 53 N GLN A 10 SHEET 3 B 5 VAL A 59 SER A 67 -1 O ILE A 60 N ALA A 52 SHEET 4 B 5 ALA A 72 SER A 74 -1 O SER A 74 N LEU A 66 SHEET 5 B 5 MSE A 106 ASP A 108 1 O MSE A 106 N ALA A 73 LINK C MSE A 1 N THR A 2 1555 1555 1.35 LINK C LEU A 93 N MSE A 94 1555 1555 1.34 LINK C MSE A 94 N ARG A 95 1555 1555 1.33 LINK C TYR A 105 N MSE A 106 1555 1555 1.33 LINK C MSE A 106 N VAL A 107 1555 1555 1.33 LINK C ALA A 129 N MSE A 130 1555 1555 1.32 LINK C MSE A 130 N PHE A 131 1555 1555 1.31 LINK O SER A 86 CA CA A 201 1555 1555 2.38 LINK OG SER A 86 CA CA A 201 1555 1555 2.44 LINK CA CA A 145 O HOH A 211 1555 1555 2.33 LINK CA CA A 145 O HOH A 221 1555 1555 2.48 LINK CA CA A 145 O HOH A 231 1555 1555 2.46 LINK CA CA A 145 O HOH A 242 1555 1555 2.55 LINK CA CA A 145 O HOH A 305 1555 1555 2.41 LINK CA CA A 145 O HOH A 385 1555 1555 2.24 LINK CA CA A 145 O HOH A 388 1555 1555 2.42 LINK CA CA A 201 O AHOH A 243 1555 1555 2.40 LINK CA CA A 201 O HOH A 389 1555 1555 2.31 LINK CA CA A 201 O HOH A 390 1555 1555 2.42 LINK CA CA A 201 O HOH A 391 1555 1555 2.45 SITE 1 AC1 28 GLN A 3 LEU A 78 GLU A 79 VAL A 80 SITE 2 AC1 28 ARG A 85 SER A 86 LEU A 87 GLY A 88 SITE 3 AC1 28 LEU A 89 GLY A 90 SER A 91 CYS A 111 SITE 4 AC1 28 ASP A 114 VAL A 115 PHE A 118 TYR A 119 SITE 5 AC1 28 ARG A 121 HOH A 206 HOH A 214 HOH A 222 SITE 6 AC1 28 HOH A 243 HOH A 263 HOH A 294 HOH A 341 SITE 7 AC1 28 HOH A 371 HOH A 391 HOH A 410 HOH A 417 SITE 1 AC2 8 HOH A 211 HOH A 221 HOH A 231 HOH A 242 SITE 2 AC2 8 HOH A 305 HOH A 339 HOH A 385 HOH A 388 SITE 1 AC3 6 PRO A 31 SER A 86 HOH A 243 HOH A 389 SITE 2 AC3 6 HOH A 390 HOH A 391 CRYST1 75.168 102.524 51.511 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013304 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009754 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019413 0.00000 HETATM 1 N MSE A 1 10.934 27.832 11.858 1.00 35.35 N ANISOU 1 N MSE A 1 4336 4580 4512 162 -68 -49 N HETATM 2 CA AMSE A 1 11.455 28.370 13.177 0.50 34.10 C ANISOU 2 CA AMSE A 1 4122 4414 4419 101 -46 0 C HETATM 3 CA BMSE A 1 11.354 28.252 13.217 0.50 34.67 C ANISOU 3 CA BMSE A 1 4192 4511 4469 116 -38 9 C HETATM 4 C MSE A 1 12.691 27.536 13.612 1.00 33.16 C ANISOU 4 C MSE A 1 4031 4313 4255 123 -63 1 C HETATM 5 O MSE A 1 12.980 27.309 14.849 1.00 34.66 O ANISOU 5 O MSE A 1 4135 4507 4526 39 -117 0 O HETATM 6 CB AMSE A 1 10.368 28.390 14.282 0.50 34.36 C ANISOU 6 CB AMSE A 1 4190 4423 4443 111 -11 -9 C HETATM 7 CB BMSE A 1 10.194 27.926 14.182 0.50 35.33 C ANISOU 7 CB BMSE A 1 4311 4585 4525 130 15 12 C HETATM 8 CG AMSE A 1 8.974 28.937 13.888 0.50 32.42 C ANISOU 8 CG AMSE A 1 4000 3994 4322 48 0 -66 C HETATM 9 CG BMSE A 1 8.926 28.800 14.039 0.50 35.85 C ANISOU 9 CG BMSE A 1 4352 4641 4626 175 47 9 C HETATM 10 SE AMSE A 1 7.564 27.586 13.646 0.38 30.30 SE ANISOU 10 SE AMSE A 1 3739 3317 4454 419 117 -595 SE HETATM 11 SE BMSE A 1 7.832 28.701 12.405 0.37 36.17 SE ANISOU 11 SE BMSE A 1 4091 4971 4678 981 237 80 SE HETATM 12 CE AMSE A 1 7.641 27.579 11.784 0.50 17.83 C ANISOU 12 CE AMSE A 1 1742 1520 3511 -597 -310 426 C HETATM 13 CE BMSE A 1 7.612 26.795 12.169 0.50 35.82 C ANISOU 13 CE BMSE A 1 4414 4926 4268 176 82 -1 C