PDB Short entry for 3SHV HEADER CELL CYCLE 17-JUN-11 3SHV TITLE CRYSTAL STRUCTURE OF HUMAN MCPH1 TANDEM BRCT DOMAINS-GAMMA H2AX TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICROCEPHALIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 639-835; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE H2A.X; COMPND 8 CHAIN: C, D; COMPND 9 FRAGMENT: RESIDUES IN UNP 134-143; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MCPH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS TANDEM BRCT DOMAINS H2AX, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR Z.H.SHAO,F.D.LI,W.YAN REVDAT 4 01-NOV-23 3SHV 1 REMARK SEQADV LINK REVDAT 3 08-NOV-17 3SHV 1 REMARK REVDAT 2 19-JUN-13 3SHV 1 JRNL REVDAT 1 28-DEC-11 3SHV 0 JRNL AUTH Z.H.SHAO,F.D.LI,S.M.-H.SY,W.YAN,Z.ZHANG,D.GONG,B.WEN, JRNL AUTH 2 M.S.Y.HUEN,Q.GONG,J.WU,Y.SHI JRNL TITL SPECIFIC RECOGNITION OF PHOSPHORYLATED TAIL OF H2AX BY THE JRNL TITL 2 TANDEM BRCT DOMAINS OF MCPH1 REVEALED BY COMPLEX STRUCTURE JRNL REF J.STRUCT.BIOL. V. 177 459 2012 JRNL REFN ISSN 1047-8477 JRNL PMID 22154951 JRNL DOI 10.1016/J.JSB.2011.11.022 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 31018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1564 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2062 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3048 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.066 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3112 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4245 ; 1.458 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 386 ; 6.171 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;34.757 ;23.621 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 513 ;14.385 ;15.058 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;19.037 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 481 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2308 ; 0.007 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1954 ; 0.917 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3176 ; 1.739 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1158 ; 2.560 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1069 ; 4.145 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3SHV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066221. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : PLANE GRATING REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31077 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 3SHT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE TRIHYDRATE, 100MM REMARK 280 TRIS HYDROCHLORIDE(PH 8.5), 30%(W/V) PEG4000 , VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 61.38600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.43000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 61.38600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.43000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 630 REMARK 465 GLY A 631 REMARK 465 HIS A 632 REMARK 465 HIS A 633 REMARK 465 HIS A 634 REMARK 465 HIS A 635 REMARK 465 HIS A 636 REMARK 465 HIS A 637 REMARK 465 MET A 638 REMARK 465 LYS A 639 REMARK 465 SER A 640 REMARK 465 GLY A 641 REMARK 465 ARG A 642 REMARK 465 GLY A 643 REMARK 465 LYS A 644 REMARK 465 SER A 834 REMARK 465 GLN A 835 REMARK 465 MET B 630 REMARK 465 GLY B 631 REMARK 465 HIS B 632 REMARK 465 HIS B 633 REMARK 465 HIS B 634 REMARK 465 HIS B 635 REMARK 465 HIS B 636 REMARK 465 HIS B 637 REMARK 465 MET B 638 REMARK 465 LYS B 639 REMARK 465 SER B 640 REMARK 465 GLY B 641 REMARK 465 ARG B 642 REMARK 465 GLY B 643 REMARK 465 LYS B 644 REMARK 465 GLN B 835 REMARK 465 LYS C 133 REMARK 465 LYS C 134 REMARK 465 ALA C 135 REMARK 465 THR C 136 REMARK 465 LYS D 133 REMARK 465 LYS D 134 REMARK 465 ALA D 135 REMARK 465 THR D 136 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 804 CD CE NZ REMARK 480 LYS B 645 CB CG CD CE NZ REMARK 480 LEU B 746 CB CG CD1 CD2 REMARK 480 SER B 834 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU C 141 O HOH C 196 1.74 REMARK 500 NH1 ARG A 791 O HOH A 182 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN C 137 O HOH A 97 1556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU B 746 CA LEU B 746 CB 0.180 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 741 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 741 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 671 -161.35 63.63 REMARK 500 LEU A 730 48.32 -87.48 REMARK 500 SER B 654 50.95 39.00 REMARK 500 LYS B 671 -162.35 61.99 REMARK 500 PRO B 691 58.75 -69.22 REMARK 500 LEU B 730 48.69 -87.90 REMARK 500 LEU B 746 55.97 -109.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SHT RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS SEQUENCE IS FROM GENBANK NP_078872.2 MICROCEPHALIN ISOFORM 1. REMARK 999 MICROCEPHALIN HAS A NATURAL VARIATIONS AT RESIDUE 761 POSITION IN REMARK 999 UNIPROT DATABASE. DBREF 3SHV A 639 835 UNP Q8NEM0 MCPH1_HUMAN 639 835 DBREF 3SHV B 639 835 UNP Q8NEM0 MCPH1_HUMAN 639 835 DBREF 3SHV C 133 142 UNP P16104 H2AX_HUMAN 134 143 DBREF 3SHV D 133 142 UNP P16104 H2AX_HUMAN 134 143 SEQADV 3SHV MET A 630 UNP Q8NEM0 EXPRESSION TAG SEQADV 3SHV GLY A 631 UNP Q8NEM0 EXPRESSION TAG SEQADV 3SHV HIS A 632 UNP Q8NEM0 EXPRESSION TAG SEQADV 3SHV HIS A 633 UNP Q8NEM0 EXPRESSION TAG SEQADV 3SHV HIS A 634 UNP Q8NEM0 EXPRESSION TAG SEQADV 3SHV HIS A 635 UNP Q8NEM0 EXPRESSION TAG SEQADV 3SHV HIS A 636 UNP Q8NEM0 EXPRESSION TAG SEQADV 3SHV HIS A 637 UNP Q8NEM0 EXPRESSION TAG SEQADV 3SHV MET A 638 UNP Q8NEM0 EXPRESSION TAG SEQADV 3SHV ALA A 761 UNP Q8NEM0 VAL 761 SEE REMARK 999 SEQADV 3SHV MET B 630 UNP Q8NEM0 EXPRESSION TAG SEQADV 3SHV GLY B 631 UNP Q8NEM0 EXPRESSION TAG SEQADV 3SHV HIS B 632 UNP Q8NEM0 EXPRESSION TAG SEQADV 3SHV HIS B 633 UNP Q8NEM0 EXPRESSION TAG SEQADV 3SHV HIS B 634 UNP Q8NEM0 EXPRESSION TAG SEQADV 3SHV HIS B 635 UNP Q8NEM0 EXPRESSION TAG SEQADV 3SHV HIS B 636 UNP Q8NEM0 EXPRESSION TAG SEQADV 3SHV HIS B 637 UNP Q8NEM0 EXPRESSION TAG SEQADV 3SHV MET B 638 UNP Q8NEM0 EXPRESSION TAG SEQADV 3SHV ALA B 761 UNP Q8NEM0 VAL 761 SEE REMARK 999 SEQRES 1 A 206 MET GLY HIS HIS HIS HIS HIS HIS MET LYS SER GLY ARG SEQRES 2 A 206 GLY LYS LYS PRO THR ARG THR LEU VAL MET THR SER MET SEQRES 3 A 206 PRO SER GLU LYS GLN ASN VAL VAL ILE GLN VAL VAL ASP SEQRES 4 A 206 LYS LEU LYS GLY PHE SER ILE ALA PRO ASP VAL CYS GLU SEQRES 5 A 206 THR THR THR HIS VAL LEU SER GLY LYS PRO LEU ARG THR SEQRES 6 A 206 LEU ASN VAL LEU LEU GLY ILE ALA ARG GLY CYS TRP VAL SEQRES 7 A 206 LEU SER TYR ASP TRP VAL LEU TRP SER LEU GLU LEU GLY SEQRES 8 A 206 HIS TRP ILE SER GLU GLU PRO PHE GLU LEU SER HIS HIS SEQRES 9 A 206 PHE PRO ALA ALA PRO LEU CYS ARG SER GLU CYS HIS LEU SEQRES 10 A 206 SER ALA GLY PRO TYR ARG GLY THR LEU PHE ALA ASP GLN SEQRES 11 A 206 PRO ALA MET PHE VAL SER PRO ALA SER SER PRO PRO VAL SEQRES 12 A 206 ALA LYS LEU CYS GLU LEU VAL HIS LEU CYS GLY GLY ARG SEQRES 13 A 206 VAL SER GLN VAL PRO ARG GLN ALA SER ILE VAL ILE GLY SEQRES 14 A 206 PRO TYR SER GLY LYS LYS LYS ALA THR VAL LYS TYR LEU SEQRES 15 A 206 SER GLU LYS TRP VAL LEU ASP SER ILE THR GLN HIS LYS SEQRES 16 A 206 VAL CYS ALA PRO GLU ASN TYR LEU LEU SER GLN SEQRES 1 B 206 MET GLY HIS HIS HIS HIS HIS HIS MET LYS SER GLY ARG SEQRES 2 B 206 GLY LYS LYS PRO THR ARG THR LEU VAL MET THR SER MET SEQRES 3 B 206 PRO SER GLU LYS GLN ASN VAL VAL ILE GLN VAL VAL ASP SEQRES 4 B 206 LYS LEU LYS GLY PHE SER ILE ALA PRO ASP VAL CYS GLU SEQRES 5 B 206 THR THR THR HIS VAL LEU SER GLY LYS PRO LEU ARG THR SEQRES 6 B 206 LEU ASN VAL LEU LEU GLY ILE ALA ARG GLY CYS TRP VAL SEQRES 7 B 206 LEU SER TYR ASP TRP VAL LEU TRP SER LEU GLU LEU GLY SEQRES 8 B 206 HIS TRP ILE SER GLU GLU PRO PHE GLU LEU SER HIS HIS SEQRES 9 B 206 PHE PRO ALA ALA PRO LEU CYS ARG SER GLU CYS HIS LEU SEQRES 10 B 206 SER ALA GLY PRO TYR ARG GLY THR LEU PHE ALA ASP GLN SEQRES 11 B 206 PRO ALA MET PHE VAL SER PRO ALA SER SER PRO PRO VAL SEQRES 12 B 206 ALA LYS LEU CYS GLU LEU VAL HIS LEU CYS GLY GLY ARG SEQRES 13 B 206 VAL SER GLN VAL PRO ARG GLN ALA SER ILE VAL ILE GLY SEQRES 14 B 206 PRO TYR SER GLY LYS LYS LYS ALA THR VAL LYS TYR LEU SEQRES 15 B 206 SER GLU LYS TRP VAL LEU ASP SER ILE THR GLN HIS LYS SEQRES 16 B 206 VAL CYS ALA PRO GLU ASN TYR LEU LEU SER GLN SEQRES 1 C 10 LYS LYS ALA THR GLN ALA SEP GLN GLU TYR SEQRES 1 D 10 LYS LYS ALA THR GLN ALA SEP GLN GLU TYR MODRES 3SHV SEP C 139 SER PHOSPHOSERINE MODRES 3SHV SEP D 139 SER PHOSPHOSERINE HET SEP C 139 10 HET SEP D 139 10 HETNAM SEP PHOSPHOSERINE HETSYN SEP PHOSPHONOSERINE FORMUL 3 SEP 2(C3 H8 N O6 P) FORMUL 5 HOH *182(H2 O) HELIX 1 1 PRO A 656 LYS A 671 1 16 HELIX 2 2 THR A 694 ARG A 703 1 10 HELIX 3 3 TYR A 710 GLY A 720 1 11 HELIX 4 4 GLU A 725 GLU A 729 5 5 HELIX 5 5 PRO A 735 SER A 747 1 13 HELIX 6 6 PRO A 771 CYS A 782 1 12 HELIX 7 7 VAL A 789 ALA A 793 5 5 HELIX 8 8 SER A 812 HIS A 823 1 12 HELIX 9 9 ALA A 827 LEU A 832 5 6 HELIX 10 10 PRO B 656 LYS B 671 1 16 HELIX 11 11 THR B 694 ARG B 703 1 10 HELIX 12 12 TYR B 710 LEU B 719 1 10 HELIX 13 13 GLU B 725 GLU B 729 5 5 HELIX 14 14 PRO B 735 LEU B 746 1 12 HELIX 15 15 PRO B 771 CYS B 782 1 12 HELIX 16 16 SER B 812 HIS B 823 1 12 HELIX 17 17 ALA B 827 TYR B 831 5 5 SHEET 1 A 4 SER A 674 ALA A 676 0 SHEET 2 A 4 THR A 649 THR A 653 1 N LEU A 650 O ALA A 676 SHEET 3 A 4 THR A 683 SER A 688 1 O LEU A 687 N VAL A 651 SHEET 4 A 4 TRP A 706 SER A 709 1 O LEU A 708 N VAL A 686 SHEET 1 B 4 VAL A 786 SER A 787 0 SHEET 2 B 4 MET A 762 VAL A 764 1 N MET A 762 O SER A 787 SHEET 3 B 4 ILE A 795 ILE A 797 1 O ILE A 797 N PHE A 763 SHEET 4 B 4 LYS A 809 LEU A 811 1 O LYS A 809 N VAL A 796 SHEET 1 C 4 SER B 674 ALA B 676 0 SHEET 2 C 4 THR B 649 THR B 653 1 N LEU B 650 O ALA B 676 SHEET 3 C 4 THR B 683 SER B 688 1 O THR B 684 N THR B 649 SHEET 4 C 4 TRP B 706 SER B 709 1 O TRP B 706 N VAL B 686 SHEET 1 D 4 VAL B 786 SER B 787 0 SHEET 2 D 4 MET B 762 VAL B 764 1 N MET B 762 O SER B 787 SHEET 3 D 4 ILE B 795 ILE B 797 1 O ILE B 795 N PHE B 763 SHEET 4 D 4 LYS B 809 LEU B 811 1 O LEU B 811 N VAL B 796 LINK C ALA C 138 N SEP C 139 1555 1555 1.33 LINK C SEP C 139 N GLN C 140 1555 1555 1.31 LINK C ALA D 138 N SEP D 139 1555 1555 1.33 LINK C SEP D 139 N GLN D 140 1555 1555 1.30 CISPEP 1 SER A 769 PRO A 770 0 1.37 CISPEP 2 GLY B 749 PRO B 750 0 4.27 CISPEP 3 SER B 769 PRO B 770 0 2.12 CRYST1 122.772 132.860 31.534 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008145 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007527 0.000000 0.00000 SCALE3 0.000000 0.000000 0.031712 0.00000