PDB Short entry for 3SJ5 HEADER SIGNALING PROTEIN 20-JUN-11 3SJ5 TITLE I5F MUTANT STRUCTURE OF T. TENGCONGENSIS H-NOX COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYL-ACCEPTING CHEMOTAXIS PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CALDANAEROBACTER SUBTERRANEUS; SOURCE 3 ORGANISM_TAXID: 119072; SOURCE 4 STRAIN: SUBSP. TENGCONGENSIS; SOURCE 5 GENE: TAR4, TTE0680; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: RP523; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCW KEYWDS NO OR O2-SENSING PROTEIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.E.WEINERT,C.M.PHILLIPS-PIRO,R.TRAN,R.A.MATHIES,M.A.MARLETTA REVDAT 3 25-OCT-17 3SJ5 1 REMARK REVDAT 2 24-AUG-11 3SJ5 1 JRNL REVDAT 1 20-JUL-11 3SJ5 0 JRNL AUTH E.E.WEINERT,C.M.PHILLIPS-PIRO,R.TRAN,R.A.MATHIES, JRNL AUTH 2 M.A.MARLETTA JRNL TITL CONTROLLING CONFORMATIONAL FLEXIBILITY OF AN O2-BINDING JRNL TITL 2 H-NOX DOMAIN. JRNL REF BIOCHEMISTRY V. 50 6832 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21721586 JRNL DOI 10.1021/BI200788X REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 43519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2202 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2171 - 4.2139 0.99 2742 157 0.1813 0.2243 REMARK 3 2 4.2139 - 3.3450 1.00 2732 123 0.1827 0.2472 REMARK 3 3 3.3450 - 2.9222 1.00 2692 143 0.2040 0.2353 REMARK 3 4 2.9222 - 2.6551 1.00 2696 127 0.2070 0.2672 REMARK 3 5 2.6551 - 2.4648 1.00 2648 155 0.2000 0.2387 REMARK 3 6 2.4648 - 2.3195 0.99 2679 133 0.2017 0.2472 REMARK 3 7 2.3195 - 2.2033 0.99 2680 130 0.1993 0.2618 REMARK 3 8 2.2033 - 2.1074 0.99 2655 130 0.1947 0.2338 REMARK 3 9 2.1074 - 2.0263 0.99 2624 140 0.1897 0.2766 REMARK 3 10 2.0263 - 1.9563 0.97 2612 154 0.1947 0.2330 REMARK 3 11 1.9563 - 1.8952 0.96 2577 158 0.2014 0.2404 REMARK 3 12 1.8952 - 1.8410 0.94 2505 131 0.2081 0.2892 REMARK 3 13 1.8410 - 1.7925 0.93 2478 131 0.2251 0.2443 REMARK 3 14 1.7925 - 1.7488 0.91 2444 123 0.2421 0.2972 REMARK 3 15 1.7488 - 1.7090 0.90 2378 132 0.2671 0.3099 REMARK 3 16 1.7090 - 1.6730 0.81 2175 135 0.2669 0.3347 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 46.21 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.47420 REMARK 3 B22 (A**2) : 5.66160 REMARK 3 B33 (A**2) : -3.18740 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.25410 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3308 REMARK 3 ANGLE : 0.992 4480 REMARK 3 CHIRALITY : 0.070 455 REMARK 3 PLANARITY : 0.005 564 REMARK 3 DIHEDRAL : 14.883 1254 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 1:62) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4598 13.4087 13.5072 REMARK 3 T TENSOR REMARK 3 T11: 0.1133 T22: 0.3351 REMARK 3 T33: 0.2091 T12: -0.0219 REMARK 3 T13: -0.0325 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.5789 L22: 0.6177 REMARK 3 L33: 1.3222 L12: -0.2870 REMARK 3 L13: 0.0449 L23: 0.0093 REMARK 3 S TENSOR REMARK 3 S11: 0.1735 S12: -0.5386 S13: 0.1628 REMARK 3 S21: 0.1109 S22: -0.1819 S23: -0.2048 REMARK 3 S31: -0.2913 S32: 0.1013 S33: 0.0643 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 63:185) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3261 10.4474 4.5469 REMARK 3 T TENSOR REMARK 3 T11: 0.0957 T22: 0.1585 REMARK 3 T33: 0.1181 T12: 0.0181 REMARK 3 T13: 0.0015 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.1911 L22: 0.6378 REMARK 3 L33: 1.1065 L12: -0.0078 REMARK 3 L13: 0.1483 L23: -0.1315 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: -0.0466 S13: -0.0289 REMARK 3 S21: 0.0188 S22: 0.0063 S23: -0.0012 REMARK 3 S31: -0.0004 S32: -0.2794 S33: 0.0143 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 1:44) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5938 1.2204 -32.4435 REMARK 3 T TENSOR REMARK 3 T11: 0.6351 T22: 0.2877 REMARK 3 T33: 0.1806 T12: -0.3380 REMARK 3 T13: 0.0079 T23: -0.2304 REMARK 3 L TENSOR REMARK 3 L11: 0.2276 L22: 0.3376 REMARK 3 L33: 0.4685 L12: 0.0535 REMARK 3 L13: 0.0568 L23: 0.4001 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: 0.3136 S13: -0.0037 REMARK 3 S21: -0.3502 S22: 0.1906 S23: -0.0451 REMARK 3 S31: -0.1936 S32: 0.0484 S33: 0.4870 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 45:90) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2439 7.0886 -24.6698 REMARK 3 T TENSOR REMARK 3 T11: 0.3412 T22: 0.1512 REMARK 3 T33: 0.1991 T12: -0.0375 REMARK 3 T13: 0.0219 T23: -0.0913 REMARK 3 L TENSOR REMARK 3 L11: 0.8850 L22: 0.0993 REMARK 3 L33: 0.2758 L12: -0.2297 REMARK 3 L13: 0.4531 L23: -0.0843 REMARK 3 S TENSOR REMARK 3 S11: 0.1538 S12: 0.3006 S13: -0.2043 REMARK 3 S21: 0.0627 S22: -0.0389 S23: -0.1182 REMARK 3 S31: 0.3221 S32: 0.0799 S33: 0.0390 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 91:137) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1108 23.0471 -24.1684 REMARK 3 T TENSOR REMARK 3 T11: 0.1667 T22: 0.1652 REMARK 3 T33: 0.1354 T12: -0.0037 REMARK 3 T13: 0.0073 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.1924 L22: 0.2620 REMARK 3 L33: 0.1988 L12: -0.1168 REMARK 3 L13: -0.1681 L23: 0.1253 REMARK 3 S TENSOR REMARK 3 S11: -0.0104 S12: 0.2135 S13: 0.0536 REMARK 3 S21: -0.0547 S22: -0.0349 S23: -0.0642 REMARK 3 S31: -0.1482 S32: -0.0252 S33: 0.0008 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 138:183) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2972 17.8675 -14.9986 REMARK 3 T TENSOR REMARK 3 T11: 0.1726 T22: 0.1153 REMARK 3 T33: 0.1516 T12: 0.0153 REMARK 3 T13: -0.0024 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.1414 L22: 0.1122 REMARK 3 L33: 0.4899 L12: 0.0358 REMARK 3 L13: -0.0829 L23: -0.0036 REMARK 3 S TENSOR REMARK 3 S11: 0.1244 S12: 0.0974 S13: 0.0740 REMARK 3 S21: 0.0580 S22: -0.0532 S23: -0.0505 REMARK 3 S31: 0.0845 S32: -0.0258 S33: 0.0067 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SJ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000066265. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977408 REMARK 200 MONOCHROMATOR : ASYMMETRIC CURVED CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45085 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 20 % PEG 3350, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.55800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE QUATERNARY STRUCTURE FOR THE H-NOX REMARK 300 DOMAIN IS MONOMERIC IN SOLUTION AS TESTED THROUGH GEL FILTRATION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 186 REMARK 465 LYS A 187 REMARK 465 ASN A 188 REMARK 465 GLU B 184 REMARK 465 TYR B 185 REMARK 465 LYS B 186 REMARK 465 LYS B 187 REMARK 465 ASN B 188 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 182 -9.56 -147.96 REMARK 500 LEU B 117 38.03 -141.63 REMARK 500 MET B 137 58.23 -94.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 102 NE2 REMARK 620 2 HEM A 500 NA 91.1 REMARK 620 3 HEM A 500 NB 86.3 91.2 REMARK 620 4 HEM A 500 NC 91.6 177.3 89.2 REMARK 620 5 HEM A 500 ND 92.0 88.2 178.2 91.5 REMARK 620 6 HOH A 339 O 178.5 87.4 93.2 89.8 88.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 102 NE2 REMARK 620 2 HEM B 502 NA 90.9 REMARK 620 3 HEM B 502 NB 87.7 89.8 REMARK 620 4 HEM B 502 NC 92.2 176.8 90.0 REMARK 620 5 HEM B 502 ND 90.8 90.5 178.4 89.7 REMARK 620 6 HOH B 190 O 176.2 87.5 88.9 89.4 92.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U55 RELATED DB: PDB REMARK 900 WILD TYPE TT H-NOX REMARK 900 RELATED ID: 1U4H RELATED DB: PDB REMARK 900 WILD TYPE TT H-NOX REMARK 900 RELATED ID: 1U56 RELATED DB: PDB REMARK 900 WILD TYPE TT H-NOX REMARK 900 RELATED ID: 3EEE RELATED DB: PDB REMARK 900 P115A TT H-NOX REMARK 900 RELATED ID: 3IQB RELATED DB: PDB REMARK 900 I75F/L144F TT H-NOX REMARK 900 RELATED ID: 3LAH RELATED DB: PDB REMARK 900 H102G TT H-NOX REMARK 900 RELATED ID: 3LAI RELATED DB: PDB REMARK 900 H102G TT H-NOX DBREF 3SJ5 A 1 188 UNP Q8RBX6 Q8RBX6_THETN 1 188 DBREF 3SJ5 B 1 188 UNP Q8RBX6 Q8RBX6_THETN 1 188 SEQADV 3SJ5 PHE A 5 UNP Q8RBX6 ILE 5 ENGINEERED MUTATION SEQADV 3SJ5 PHE B 5 UNP Q8RBX6 ILE 5 ENGINEERED MUTATION SEQRES 1 A 188 MET LYS GLY THR PHE VAL GLY THR TRP ILE LYS THR LEU SEQRES 2 A 188 ARG ASP LEU TYR GLY ASN ASP VAL VAL ASP GLU SER LEU SEQRES 3 A 188 LYS SER VAL GLY TRP GLU PRO ASP ARG VAL ILE THR PRO SEQRES 4 A 188 LEU GLU ASP ILE ASP ASP ASP GLU VAL ARG ARG ILE PHE SEQRES 5 A 188 ALA LYS VAL SER GLU LYS THR GLY LYS ASN VAL ASN GLU SEQRES 6 A 188 ILE TRP ARG GLU VAL GLY ARG GLN ASN ILE LYS THR PHE SEQRES 7 A 188 SER GLU TRP PHE PRO SER TYR PHE ALA GLY ARG ARG LEU SEQRES 8 A 188 VAL ASN PHE LEU MET MET MET ASP GLU VAL HIS LEU GLN SEQRES 9 A 188 LEU THR LYS MET ILE LYS GLY ALA THR PRO PRO ARG LEU SEQRES 10 A 188 ILE ALA LYS PRO VAL ALA LYS ASP ALA ILE GLU MET GLU SEQRES 11 A 188 TYR VAL SER LYS ARG LYS MET TYR ASP TYR PHE LEU GLY SEQRES 12 A 188 LEU ILE GLU GLY SER SER LYS PHE PHE LYS GLU GLU ILE SEQRES 13 A 188 SER VAL GLU GLU VAL GLU ARG GLY GLU LYS ASP GLY PHE SEQRES 14 A 188 SER ARG LEU LYS VAL ARG ILE LYS PHE LYS ASN PRO VAL SEQRES 15 A 188 PHE GLU TYR LYS LYS ASN SEQRES 1 B 188 MET LYS GLY THR PHE VAL GLY THR TRP ILE LYS THR LEU SEQRES 2 B 188 ARG ASP LEU TYR GLY ASN ASP VAL VAL ASP GLU SER LEU SEQRES 3 B 188 LYS SER VAL GLY TRP GLU PRO ASP ARG VAL ILE THR PRO SEQRES 4 B 188 LEU GLU ASP ILE ASP ASP ASP GLU VAL ARG ARG ILE PHE SEQRES 5 B 188 ALA LYS VAL SER GLU LYS THR GLY LYS ASN VAL ASN GLU SEQRES 6 B 188 ILE TRP ARG GLU VAL GLY ARG GLN ASN ILE LYS THR PHE SEQRES 7 B 188 SER GLU TRP PHE PRO SER TYR PHE ALA GLY ARG ARG LEU SEQRES 8 B 188 VAL ASN PHE LEU MET MET MET ASP GLU VAL HIS LEU GLN SEQRES 9 B 188 LEU THR LYS MET ILE LYS GLY ALA THR PRO PRO ARG LEU SEQRES 10 B 188 ILE ALA LYS PRO VAL ALA LYS ASP ALA ILE GLU MET GLU SEQRES 11 B 188 TYR VAL SER LYS ARG LYS MET TYR ASP TYR PHE LEU GLY SEQRES 12 B 188 LEU ILE GLU GLY SER SER LYS PHE PHE LYS GLU GLU ILE SEQRES 13 B 188 SER VAL GLU GLU VAL GLU ARG GLY GLU LYS ASP GLY PHE SEQRES 14 B 188 SER ARG LEU LYS VAL ARG ILE LYS PHE LYS ASN PRO VAL SEQRES 15 B 188 PHE GLU TYR LYS LYS ASN HET HEM A 500 43 HET HEM B 502 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *264(H2 O) HELIX 1 1 LYS A 2 GLY A 18 1 17 HELIX 2 2 GLY A 18 SER A 28 1 11 HELIX 3 3 ASP A 44 GLY A 60 1 17 HELIX 4 4 ASN A 62 PHE A 82 1 21 HELIX 5 5 PRO A 83 PHE A 86 5 4 HELIX 6 6 ARG A 90 MET A 97 1 8 HELIX 7 7 MET A 97 LEU A 105 1 9 HELIX 8 8 MET A 137 LYS A 153 1 17 HELIX 9 9 LYS B 2 GLY B 18 1 17 HELIX 10 10 GLY B 18 VAL B 29 1 12 HELIX 11 11 ASP B 44 LYS B 58 1 15 HELIX 12 12 ASN B 62 PHE B 82 1 21 HELIX 13 13 PRO B 83 PHE B 86 5 4 HELIX 14 14 ARG B 90 LYS B 107 1 18 HELIX 15 15 MET B 137 LYS B 153 1 17 SHEET 1 A 4 ARG A 116 ALA A 123 0 SHEET 2 A 4 ALA A 126 SER A 133 -1 O VAL A 132 N ARG A 116 SHEET 3 A 4 PHE A 169 PHE A 178 -1 O ILE A 176 N ILE A 127 SHEET 4 A 4 ILE A 156 LYS A 166 -1 N LYS A 166 O PHE A 169 SHEET 1 B 4 ALA B 119 ALA B 123 0 SHEET 2 B 4 ALA B 126 SER B 133 -1 O GLU B 128 N LYS B 120 SHEET 3 B 4 PHE B 169 PHE B 178 -1 O LEU B 172 N TYR B 131 SHEET 4 B 4 ILE B 156 LYS B 166 -1 N LYS B 166 O PHE B 169 LINK NE2 HIS A 102 FE HEM A 500 1555 1555 2.02 LINK NE2 HIS B 102 FE HEM B 502 1555 1555 2.05 LINK FE HEM B 502 O HOH B 190 1555 1555 2.06 LINK FE HEM A 500 O HOH A 339 1555 1555 2.17 SITE 1 AC1 24 MET A 1 LYS A 2 PHE A 5 PHE A 78 SITE 2 AC1 24 TYR A 85 PHE A 86 MET A 98 HIS A 102 SITE 3 AC1 24 LEU A 105 THR A 113 PRO A 114 PRO A 115 SITE 4 AC1 24 MET A 129 TYR A 131 SER A 133 ARG A 135 SITE 5 AC1 24 MET A 137 TYR A 140 PHE A 141 LEU A 144 SITE 6 AC1 24 ILE A 145 HOH A 252 HOH A 281 HOH A 339 SITE 1 AC2 19 PHE B 5 PHE B 78 PHE B 86 MET B 98 SITE 2 AC2 19 HIS B 102 LEU B 105 THR B 113 PRO B 114 SITE 3 AC2 19 PRO B 115 TYR B 131 SER B 133 ARG B 135 SITE 4 AC2 19 MET B 137 TYR B 140 LEU B 144 ILE B 145 SITE 5 AC2 19 HOH B 190 HOH B 194 HOH B 268 CRYST1 44.585 67.116 66.428 90.00 92.01 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022429 0.000000 0.000788 0.00000 SCALE2 0.000000 0.014900 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015063 0.00000