PDB Short entry for 3SOW HEADER LIGASE 30-JUN-11 3SOW TITLE STRUCTURE OF UHRF1 PHD FINGER IN COMPLEX WITH HISTONE H3K4ME3 1-9 TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UHRF1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UHRF1 (UNP RESIDUES 298-367); COMPND 5 SYNONYM: INVERTED CCAAT BOX-BINDING PROTEIN OF 90 KDA, NUCLEAR COMPND 6 PROTEIN 95, NUCLEAR ZINC FINGER PROTEIN NP95, HUNP95, RING FINGER COMPND 7 PROTEIN 106, TRANSCRIPTION FACTOR ICBP90, UBIQUITIN-LIKE PHD AND RING COMPND 8 FINGER DOMAIN-CONTAINING PROTEIN 1, UBIQUITIN-LIKE-CONTAINING PHD AND COMPND 9 RING FINGER DOMAINS PROTEIN 1; COMPND 10 EC: 6.3.2.-; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: HISTONE H3; COMPND 14 CHAIN: C, D; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ICBP90, NP95, RNF106, UHRF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 OTHER_DETAILS: CHEMICALLY SYNTHESIZED KEYWDS ZN COORDINATED PHD FINGER, HISTONE BINDING, HISTONE H3, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR E.RAJAKUMARA,D.J.PATEL REVDAT 3 13-SEP-23 3SOW 1 REMARK LINK REVDAT 2 08-NOV-17 3SOW 1 REMARK REVDAT 1 03-AUG-11 3SOW 0 JRNL AUTH E.RAJAKUMARA,Z.WANG,H.MA,L.HU,H.CHEN,Y.LIN,R.GUO,F.WU,H.LI, JRNL AUTH 2 F.LAN,Y.G.SHI,Y.XU,D.J.PATEL,Y.SHI JRNL TITL PHD FINGER RECOGNITION OF UNMODIFIED HISTONE H3R2 LINKS JRNL TITL 2 UHRF1 TO REGULATION OF EUCHROMATIC GENE EXPRESSION. JRNL REF MOL.CELL V. 43 275 2011 JRNL REFN ISSN 1097-2765 JRNL PMID 21777816 JRNL DOI 10.1016/J.MOLCEL.2011.07.006 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.5_2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.090 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 12220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7795 - 3.0926 0.99 3309 154 0.2022 0.2382 REMARK 3 2 3.0926 - 2.4561 0.97 3030 151 0.2036 0.2527 REMARK 3 3 2.4561 - 2.1461 0.91 2759 163 0.1988 0.2298 REMARK 3 4 2.1461 - 1.9501 0.83 2517 137 0.2074 0.2927 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 40.84 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.77930 REMARK 3 B22 (A**2) : 5.77930 REMARK 3 B33 (A**2) : -11.55850 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1157 REMARK 3 ANGLE : 1.115 1563 REMARK 3 CHIRALITY : 0.073 162 REMARK 3 PLANARITY : 0.004 206 REMARK 3 DIHEDRAL : 19.233 451 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SOW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066469. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : CRYO-COOLED DOUBLE SI(111) REMARK 200 DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13122 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 13.70 REMARK 200 R MERGE FOR SHELL (I) : 0.78100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3SOU CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% W/V POLYETHYLENE GLYCOL 8,000, 0.2 REMARK 280 M SODIUM ACETATE TRIHYDRATE, 0.1 M SODIUM CACODYLATE TRIHYDRATE, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.74450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 21.31100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 21.31100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 137.61675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 21.31100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 21.31100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.87225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 21.31100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 21.31100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 137.61675 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 21.31100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 21.31100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.87225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 91.74450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HALF OF THE CONTENT IN THE ASYMMETRIC UNIT THAT CONTAINS REMARK 300 PROTEIN-PEPTIDE COMPLEX REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 311 REMARK 465 GLY A 312 REMARK 465 ALA A 380 REMARK 465 SER B 311 REMARK 465 GLY B 312 REMARK 465 ASN B 378 REMARK 465 ASP B 379 REMARK 465 ALA B 380 REMARK 465 ALA C 7 REMARK 465 ARG C 8 REMARK 465 LYS C 9 REMARK 465 ALA D 7 REMARK 465 ARG D 8 REMARK 465 LYS D 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 378 CG OD1 ND2 REMARK 470 GLN D 5 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 330 -155.62 -121.45 REMARK 500 GLU A 348 -61.38 -104.04 REMARK 500 ALA B 330 -154.95 -116.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 315 SG REMARK 620 2 CYS A 318 SG 110.6 REMARK 620 3 CYS A 326 SG 111.6 112.6 REMARK 620 4 CYS A 329 SG 108.0 100.3 113.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 331 SG REMARK 620 2 CYS A 334 SG 109.7 REMARK 620 3 HIS A 354 ND1 100.9 98.1 REMARK 620 4 CYS A 357 SG 124.3 107.5 113.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 3 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 346 SG REMARK 620 2 CYS A 349 SG 105.9 REMARK 620 3 CYS A 373 SG 109.0 114.3 REMARK 620 4 CYS A 376 SG 109.1 111.9 106.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 7 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 332 NE2 REMARK 620 2 GLU A 375 OE2 105.9 REMARK 620 3 HIS B 317 ND1 109.1 124.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 8 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 317 ND1 REMARK 620 2 HIS B 332 NE2 111.4 REMARK 620 3 GLU B 375 OE2 117.0 108.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 4 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 331 SG REMARK 620 2 CYS B 334 SG 109.6 REMARK 620 3 HIS B 354 ND1 100.1 97.1 REMARK 620 4 CYS B 357 SG 122.7 110.1 114.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 5 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 315 SG REMARK 620 2 CYS B 318 SG 110.5 REMARK 620 3 CYS B 326 SG 114.2 112.2 REMARK 620 4 CYS B 329 SG 107.6 99.9 111.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 6 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 346 SG REMARK 620 2 CYS B 349 SG 103.2 REMARK 620 3 CYS B 373 SG 109.9 113.9 REMARK 620 4 CYS B 376 SG 111.3 109.3 109.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 8 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SOU RELATED DB: PDB REMARK 900 STRUCTURE OF UHRF1 PROTEIN IN COMPLEX WITH HISTONE PEPTIDE REMARK 900 RELATED ID: 3SOX RELATED DB: PDB REMARK 900 STRUCTURE OF UHRF1 PROTEIN IN THE FREE FORM DBREF 3SOW A 311 380 UNP Q96T88 UHRF1_HUMAN 298 367 DBREF 3SOW B 311 380 UNP Q96T88 UHRF1_HUMAN 298 367 DBREF 3SOW C 1 9 PDB 3SOW 3SOW 1 9 DBREF 3SOW D 1 9 PDB 3SOW 3SOW 1 9 SEQRES 1 A 70 SER GLY PRO SER CYS LYS HIS CYS LYS ASP ASP VAL ASN SEQRES 2 A 70 ARG LEU CYS ARG VAL CYS ALA CYS HIS LEU CYS GLY GLY SEQRES 3 A 70 ARG GLN ASP PRO ASP LYS GLN LEU MET CYS ASP GLU CYS SEQRES 4 A 70 ASP MET ALA PHE HIS ILE TYR CYS LEU ASP PRO PRO LEU SEQRES 5 A 70 SER SER VAL PRO SER GLU ASP GLU TRP TYR CYS PRO GLU SEQRES 6 A 70 CYS ARG ASN ASP ALA SEQRES 1 B 70 SER GLY PRO SER CYS LYS HIS CYS LYS ASP ASP VAL ASN SEQRES 2 B 70 ARG LEU CYS ARG VAL CYS ALA CYS HIS LEU CYS GLY GLY SEQRES 3 B 70 ARG GLN ASP PRO ASP LYS GLN LEU MET CYS ASP GLU CYS SEQRES 4 B 70 ASP MET ALA PHE HIS ILE TYR CYS LEU ASP PRO PRO LEU SEQRES 5 B 70 SER SER VAL PRO SER GLU ASP GLU TRP TYR CYS PRO GLU SEQRES 6 B 70 CYS ARG ASN ASP ALA SEQRES 1 C 9 ALA ARG THR M3L GLN THR ALA ARG LYS SEQRES 1 D 9 ALA ARG THR M3L GLN THR ALA ARG LYS MODRES 3SOW M3L C 4 LYS N-TRIMETHYLLYSINE MODRES 3SOW M3L D 4 LYS N-TRIMETHYLLYSINE HET M3L C 4 12 HET M3L D 4 12 HET ZN A 1 1 HET ZN A 2 1 HET ZN A 3 1 HET ZN A 7 1 HET ZN B 4 1 HET ZN B 5 1 HET ZN B 6 1 HET ZN B 8 1 HETNAM M3L N-TRIMETHYLLYSINE HETNAM ZN ZINC ION FORMUL 3 M3L 2(C9 H21 N2 O2 1+) FORMUL 5 ZN 8(ZN 2+) FORMUL 13 HOH *47(H2 O) HELIX 1 1 ASP A 339 ASP A 341 5 3 HELIX 2 2 TYR A 356 LEU A 358 5 3 HELIX 3 3 ASP B 339 ASP B 341 5 3 SHEET 1 A 2 GLN A 343 MET A 345 0 SHEET 2 A 2 ALA A 352 HIS A 354 -1 O PHE A 353 N LEU A 344 SHEET 1 B 2 GLN B 343 MET B 345 0 SHEET 2 B 2 ALA B 352 HIS B 354 -1 O PHE B 353 N LEU B 344 LINK C THR C 3 N M3L C 4 1555 1555 1.33 LINK C M3L C 4 N GLN C 5 1555 1555 1.33 LINK C THR D 3 N M3L D 4 1555 1555 1.33 LINK C M3L D 4 N GLN D 5 1555 1555 1.33 LINK ZN ZN A 1 SG CYS A 315 1555 1555 2.38 LINK ZN ZN A 1 SG CYS A 318 1555 1555 2.45 LINK ZN ZN A 1 SG CYS A 326 1555 1555 2.31 LINK ZN ZN A 1 SG CYS A 329 1555 1555 2.34 LINK ZN ZN A 2 SG CYS A 331 1555 1555 2.28 LINK ZN ZN A 2 SG CYS A 334 1555 1555 2.44 LINK ZN ZN A 2 ND1 HIS A 354 1555 1555 2.14 LINK ZN ZN A 2 SG CYS A 357 1555 1555 2.33 LINK ZN ZN A 3 SG CYS A 346 1555 1555 2.47 LINK ZN ZN A 3 SG CYS A 349 1555 1555 2.40 LINK ZN ZN A 3 SG CYS A 373 1555 1555 2.39 LINK ZN ZN A 3 SG CYS A 376 1555 1555 2.40 LINK ZN ZN A 7 NE2 HIS A 332 1555 1555 2.08 LINK ZN ZN A 7 OE2 GLU A 375 1555 1555 2.01 LINK ZN ZN A 7 ND1 HIS B 317 1555 1555 1.93 LINK ND1 HIS A 317 ZN ZN B 8 1555 1555 1.98 LINK ZN ZN B 4 SG CYS B 331 1555 1555 2.37 LINK ZN ZN B 4 SG CYS B 334 1555 1555 2.41 LINK ZN ZN B 4 ND1 HIS B 354 1555 1555 2.11 LINK ZN ZN B 4 SG CYS B 357 1555 1555 2.29 LINK ZN ZN B 5 SG CYS B 315 1555 1555 2.43 LINK ZN ZN B 5 SG CYS B 318 1555 1555 2.34 LINK ZN ZN B 5 SG CYS B 326 1555 1555 2.37 LINK ZN ZN B 5 SG CYS B 329 1555 1555 2.35 LINK ZN ZN B 6 SG CYS B 346 1555 1555 2.44 LINK ZN ZN B 6 SG CYS B 349 1555 1555 2.42 LINK ZN ZN B 6 SG CYS B 373 1555 1555 2.27 LINK ZN ZN B 6 SG CYS B 376 1555 1555 2.37 LINK ZN ZN B 8 NE2 HIS B 332 1555 1555 2.09 LINK ZN ZN B 8 OE2 GLU B 375 1555 1555 2.05 CISPEP 1 ASP A 359 PRO A 360 0 0.80 CISPEP 2 ASP B 359 PRO B 360 0 7.09 SITE 1 AC1 4 CYS A 315 CYS A 318 CYS A 326 CYS A 329 SITE 1 AC2 4 CYS A 331 CYS A 334 HIS A 354 CYS A 357 SITE 1 AC3 4 CYS A 346 CYS A 349 CYS A 373 CYS A 376 SITE 1 AC4 3 HIS A 332 GLU A 375 HIS B 317 SITE 1 AC5 4 CYS B 331 CYS B 334 HIS B 354 CYS B 357 SITE 1 AC6 4 CYS B 315 CYS B 318 CYS B 326 CYS B 329 SITE 1 AC7 4 CYS B 346 CYS B 349 CYS B 373 CYS B 376 SITE 1 AC8 4 HIS A 317 HOH B 43 HIS B 332 GLU B 375 CRYST1 42.622 42.622 183.489 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023462 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023462 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005450 0.00000