PDB Short entry for 3TF4 HEADER GLYCOSYL HYDROLASE 30-MAY-97 3TF4 TITLE ENDO/EXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA COMPND MOL_ID: 1; COMPND 2 MOLECULE: T. FUSCA ENDO/EXO-CELLULASE E4 CATALYTIC DOMAIN AND COMPND 3 CELLULOSE-BINDING DOMAIN; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: CATALYTIC DOMAIN AND CELLULOSE-BINDING DOMAIN; COMPND 6 SYNONYM: ENDO-1,4-BETA-D-GLUCANASE; COMPND 7 EC: 3.2.1.4; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: CRYSTAL SOAKED IN 0.3M CELLOTRIOSE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOBIFIDA FUSCA; SOURCE 3 ORGANISM_TAXID: 2021; SOURCE 4 GENE: BAMH1-PST1 FRAGMENT OF T. FUSC; SOURCE 5 EXPRESSION_SYSTEM: STREPTOMYCES LIVIDANS TK24; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 457428; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TK24; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PIJ702; SOURCE 9 EXPRESSION_SYSTEM_GENE: BAMH1-PST1 FRAGMENT OF T. FUSCA GENOMIC DNA SOURCE 10 CARRYING NATIVE E4 GENE KEYWDS GLYCOSYL HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.SAKON,D.B.WILSON,P.A.KARPLUS REVDAT 4 29-JUL-20 3TF4 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 08-SEP-09 3TF4 1 HETATM HETNAM REVDAT 2 24-FEB-09 3TF4 1 VERSN REVDAT 1 04-SEP-97 3TF4 0 JRNL AUTH J.SAKON,D.IRWIN,D.B.WILSON,P.A.KARPLUS JRNL TITL STRUCTURE AND MECHANISM OF ENDO/EXOCELLULASE E4 FROM JRNL TITL 2 THERMOMONOSPORA FUSCA. JRNL REF NAT.STRUCT.BIOL. V. 4 810 1997 JRNL REFN ISSN 1072-8368 JRNL PMID 9334746 JRNL DOI 10.1038/NSB1097-810 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 79650 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3800 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9514 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 1375 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : RESTRAINED REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TF4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000179161. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUN-96 REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : XUONG-HAMLIN MULTIWIRE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79650 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 8.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : 0.18000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : 0.43000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: PHASES, X-PLOR 3.8 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 90MG/ML E4-68 26% PEG8000 0.7M LICL REMARK 280 0.1M NA CITRATE, PH5.8 4 DEGREE, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.54000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 72.84000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 72.84000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.27000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 72.84000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 72.84000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 117.81000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 72.84000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.84000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.27000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 72.84000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.84000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 117.81000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.54000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLU A 1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU B 1 C O CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 255 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 255 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 56 -125.02 -126.92 REMARK 500 PHE A 205 -54.77 -133.29 REMARK 500 GLN A 247 -81.21 30.76 REMARK 500 SER A 253 133.95 -39.20 REMARK 500 TRP A 256 -144.47 -123.66 REMARK 500 TRP A 260 -15.41 -39.55 REMARK 500 THR A 292 -79.17 -124.41 REMARK 500 ASN A 410 10.80 -142.16 REMARK 500 ASP A 411 19.22 56.48 REMARK 500 ASP A 415 72.05 -67.80 REMARK 500 TYR A 520 117.71 -163.56 REMARK 500 CYS A 523 -164.32 -119.52 REMARK 500 VAL A 532 -83.70 -92.52 REMARK 500 ALA B 56 -121.72 -126.16 REMARK 500 ASP B 58 -168.73 -115.92 REMARK 500 SER B 197 4.03 -69.38 REMARK 500 PHE B 205 -55.10 -123.91 REMARK 500 GLN B 247 -74.01 42.30 REMARK 500 SER B 253 131.54 -31.49 REMARK 500 TRP B 256 -146.87 -129.65 REMARK 500 TRP B 260 -14.96 -43.05 REMARK 500 THR B 292 -65.18 -129.52 REMARK 500 ASP B 411 15.81 55.64 REMARK 500 ASP B 415 71.32 -68.63 REMARK 500 LYS B 496 35.36 -142.63 REMARK 500 VAL B 532 -68.61 -95.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A3001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 210 OG REMARK 620 2 GLY A 211 O 84.0 REMARK 620 3 ASP A 214 OD1 74.7 77.4 REMARK 620 4 ASP A 214 OD2 106.4 131.6 61.3 REMARK 620 5 GLU A 215 OE1 155.2 73.3 90.6 82.6 REMARK 620 6 GLU A 215 OE2 147.4 122.9 125.4 71.0 57.2 REMARK 620 7 ASP A 261 O 72.0 145.9 117.3 79.6 132.8 75.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A3002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 504 O REMARK 620 2 ASP A 506 OD1 98.0 REMARK 620 3 ASP A 506 OD2 76.0 58.9 REMARK 620 4 ASP A 571 O 159.7 88.8 91.6 REMARK 620 5 ASN A 574 OD1 118.7 87.1 145.4 80.6 REMARK 620 6 ASP A 575 OD1 84.9 168.3 132.7 92.2 81.6 REMARK 620 7 HOH A6043 O 87.2 126.8 71.6 73.5 135.7 64.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B3003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 210 OG REMARK 620 2 GLY B 211 O 85.3 REMARK 620 3 ASP B 214 OD1 83.9 81.4 REMARK 620 4 ASP B 214 OD2 105.1 138.9 61.0 REMARK 620 5 GLU B 215 OE1 151.4 67.1 98.4 100.8 REMARK 620 6 GLU B 215 OE2 138.3 119.2 129.9 79.1 58.8 REMARK 620 7 ASP B 261 O 68.4 141.9 120.6 76.6 130.5 72.5 REMARK 620 8 HOH B6017 O 74.8 71.3 146.4 149.6 88.9 81.8 75.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B3004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 504 O REMARK 620 2 ASP B 506 OD1 84.7 REMARK 620 3 ASP B 506 OD2 100.5 57.5 REMARK 620 4 ASP B 571 O 155.1 108.3 71.2 REMARK 620 5 ASN B 574 OD1 110.1 79.0 123.5 93.6 REMARK 620 6 ASP B 575 OD1 89.5 159.2 143.3 84.9 84.3 REMARK 620 7 HOH B6138 O 81.7 128.1 76.3 73.5 152.2 70.4 REMARK 620 N 1 2 3 4 5 6 REMARK 630 REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE METABOLISM REMARK 630 MOLECULE NAME: BETA-D-GLUCOPYRANOSE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 BGC A 6005 REMARK 630 BGC B 6015 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: OLIGOSACCHARIDE REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CA1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: CA BINDING SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: CA2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: CA BINDING SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: CA3 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: CA BINDING SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: CA4 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: CA BINDING SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: AA1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: ACTIVE SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: AB1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: ACTIVE SITE. DBREF 3TF4 A 1 605 UNP P26221 GUN4_THEFU 47 651 DBREF 3TF4 B 1 605 UNP P26221 GUN4_THEFU 47 651 SEQRES 1 A 605 GLU PRO ALA PHE ASN TYR ALA GLU ALA LEU GLN LYS SER SEQRES 2 A 605 MET PHE PHE TYR GLU ALA GLN ARG SER GLY LYS LEU PRO SEQRES 3 A 605 GLU ASN ASN ARG VAL SER TRP ARG GLY ASP SER GLY LEU SEQRES 4 A 605 ASN ASP GLY ALA ASP VAL GLY LEU ASP LEU THR GLY GLY SEQRES 5 A 605 TRP TYR ASP ALA GLY ASP HIS VAL LYS PHE GLY PHE PRO SEQRES 6 A 605 MET ALA PHE THR ALA THR MET LEU ALA TRP GLY ALA ILE SEQRES 7 A 605 GLU SER PRO GLU GLY TYR ILE ARG SER GLY GLN MET PRO SEQRES 8 A 605 TYR LEU LYS ASP ASN LEU ARG TRP VAL ASN ASP TYR PHE SEQRES 9 A 605 ILE LYS ALA HIS PRO SER PRO ASN VAL LEU TYR VAL GLN SEQRES 10 A 605 VAL GLY ASP GLY ASP ALA ASP HIS LYS TRP TRP GLY PRO SEQRES 11 A 605 ALA GLU VAL MET PRO MET GLU ARG PRO SER PHE LYS VAL SEQRES 12 A 605 ASP PRO SER CYS PRO GLY SER ASP VAL ALA ALA GLU THR SEQRES 13 A 605 ALA ALA ALA MET ALA ALA SER SER ILE VAL PHE ALA ASP SEQRES 14 A 605 ASP ASP PRO ALA TYR ALA ALA THR LEU VAL GLN HIS ALA SEQRES 15 A 605 LYS GLN LEU TYR THR PHE ALA ASP THR TYR ARG GLY VAL SEQRES 16 A 605 TYR SER ASP CYS VAL PRO ALA GLY ALA PHE TYR ASN SER SEQRES 17 A 605 TRP SER GLY TYR GLN ASP GLU LEU VAL TRP GLY ALA TYR SEQRES 18 A 605 TRP LEU TYR LYS ALA THR GLY ASP ASP SER TYR LEU ALA SEQRES 19 A 605 LYS ALA GLU TYR GLU TYR ASP PHE LEU SER THR GLU GLN SEQRES 20 A 605 GLN THR ASP LEU ARG SER TYR ARG TRP THR ILE ALA TRP SEQRES 21 A 605 ASP ASP LYS SER TYR GLY THR TYR VAL LEU LEU ALA LYS SEQRES 22 A 605 GLU THR GLY LYS GLN LYS TYR ILE ASP ASP ALA ASN ARG SEQRES 23 A 605 TRP LEU ASP TYR TRP THR VAL GLY VAL ASN GLY GLN ARG SEQRES 24 A 605 VAL PRO TYR SER PRO GLY GLY MET ALA VAL LEU ASP THR SEQRES 25 A 605 TRP GLY ALA LEU ARG TYR ALA ALA ASN THR ALA PHE VAL SEQRES 26 A 605 ALA LEU VAL TYR ALA LYS VAL ILE ASP ASP PRO VAL ARG SEQRES 27 A 605 LYS GLN ARG TYR HIS ASP PHE ALA VAL ARG GLN ILE ASN SEQRES 28 A 605 TYR ALA LEU GLY ASP ASN PRO ARG ASN SER SER TYR VAL SEQRES 29 A 605 VAL GLY PHE GLY ASN ASN PRO PRO ARG ASN PRO HIS HIS SEQRES 30 A 605 ARG THR ALA HIS GLY SER TRP THR ASP SER ILE ALA SER SEQRES 31 A 605 PRO ALA GLU ASN ARG HIS VAL LEU TYR GLY ALA LEU VAL SEQRES 32 A 605 GLY GLY PRO GLY SER PRO ASN ASP ALA TYR THR ASP ASP SEQRES 33 A 605 ARG GLN ASP TYR VAL ALA ASN GLU VAL ALA THR ASP TYR SEQRES 34 A 605 ASN ALA GLY PHE SER SER ALA LEU ALA MET LEU VAL GLU SEQRES 35 A 605 GLU TYR GLY GLY THR PRO LEU ALA ASP PHE PRO PRO THR SEQRES 36 A 605 GLU GLU PRO ASP GLY PRO GLU ILE PHE VAL GLU ALA GLN SEQRES 37 A 605 ILE ASN THR PRO GLY THR THR PHE THR GLU ILE LYS ALA SEQRES 38 A 605 MET ILE ARG ASN GLN SER GLY TRP PRO ALA ARG MET LEU SEQRES 39 A 605 ASP LYS GLY THR PHE ARG TYR TRP PHE THR LEU ASP GLU SEQRES 40 A 605 GLY VAL ASP PRO ALA ASP ILE THR VAL SER SER ALA TYR SEQRES 41 A 605 ASN GLN CYS ALA THR PRO GLU ASP VAL HIS HIS VAL SER SEQRES 42 A 605 GLY ASP LEU TYR TYR VAL GLU ILE ASP CYS THR GLY GLU SEQRES 43 A 605 LYS ILE PHE PRO GLY GLY GLN SER GLU HIS ARG ARG GLU SEQRES 44 A 605 VAL GLN PHE ARG ILE ALA GLY GLY PRO GLY TRP ASP PRO SEQRES 45 A 605 SER ASN ASP TRP SER PHE GLN GLY ILE GLY ASN GLU LEU SEQRES 46 A 605 ALA PRO ALA PRO TYR ILE VAL LEU TYR ASP ASP GLY VAL SEQRES 47 A 605 PRO VAL TRP GLY THR ALA PRO SEQRES 1 B 605 GLU PRO ALA PHE ASN TYR ALA GLU ALA LEU GLN LYS SER SEQRES 2 B 605 MET PHE PHE TYR GLU ALA GLN ARG SER GLY LYS LEU PRO SEQRES 3 B 605 GLU ASN ASN ARG VAL SER TRP ARG GLY ASP SER GLY LEU SEQRES 4 B 605 ASN ASP GLY ALA ASP VAL GLY LEU ASP LEU THR GLY GLY SEQRES 5 B 605 TRP TYR ASP ALA GLY ASP HIS VAL LYS PHE GLY PHE PRO SEQRES 6 B 605 MET ALA PHE THR ALA THR MET LEU ALA TRP GLY ALA ILE SEQRES 7 B 605 GLU SER PRO GLU GLY TYR ILE ARG SER GLY GLN MET PRO SEQRES 8 B 605 TYR LEU LYS ASP ASN LEU ARG TRP VAL ASN ASP TYR PHE SEQRES 9 B 605 ILE LYS ALA HIS PRO SER PRO ASN VAL LEU TYR VAL GLN SEQRES 10 B 605 VAL GLY ASP GLY ASP ALA ASP HIS LYS TRP TRP GLY PRO SEQRES 11 B 605 ALA GLU VAL MET PRO MET GLU ARG PRO SER PHE LYS VAL SEQRES 12 B 605 ASP PRO SER CYS PRO GLY SER ASP VAL ALA ALA GLU THR SEQRES 13 B 605 ALA ALA ALA MET ALA ALA SER SER ILE VAL PHE ALA ASP SEQRES 14 B 605 ASP ASP PRO ALA TYR ALA ALA THR LEU VAL GLN HIS ALA SEQRES 15 B 605 LYS GLN LEU TYR THR PHE ALA ASP THR TYR ARG GLY VAL SEQRES 16 B 605 TYR SER ASP CYS VAL PRO ALA GLY ALA PHE TYR ASN SER SEQRES 17 B 605 TRP SER GLY TYR GLN ASP GLU LEU VAL TRP GLY ALA TYR SEQRES 18 B 605 TRP LEU TYR LYS ALA THR GLY ASP ASP SER TYR LEU ALA SEQRES 19 B 605 LYS ALA GLU TYR GLU TYR ASP PHE LEU SER THR GLU GLN SEQRES 20 B 605 GLN THR ASP LEU ARG SER TYR ARG TRP THR ILE ALA TRP SEQRES 21 B 605 ASP ASP LYS SER TYR GLY THR TYR VAL LEU LEU ALA LYS SEQRES 22 B 605 GLU THR GLY LYS GLN LYS TYR ILE ASP ASP ALA ASN ARG SEQRES 23 B 605 TRP LEU ASP TYR TRP THR VAL GLY VAL ASN GLY GLN ARG SEQRES 24 B 605 VAL PRO TYR SER PRO GLY GLY MET ALA VAL LEU ASP THR SEQRES 25 B 605 TRP GLY ALA LEU ARG TYR ALA ALA ASN THR ALA PHE VAL SEQRES 26 B 605 ALA LEU VAL TYR ALA LYS VAL ILE ASP ASP PRO VAL ARG SEQRES 27 B 605 LYS GLN ARG TYR HIS ASP PHE ALA VAL ARG GLN ILE ASN SEQRES 28 B 605 TYR ALA LEU GLY ASP ASN PRO ARG ASN SER SER TYR VAL SEQRES 29 B 605 VAL GLY PHE GLY ASN ASN PRO PRO ARG ASN PRO HIS HIS SEQRES 30 B 605 ARG THR ALA HIS GLY SER TRP THR ASP SER ILE ALA SER SEQRES 31 B 605 PRO ALA GLU ASN ARG HIS VAL LEU TYR GLY ALA LEU VAL SEQRES 32 B 605 GLY GLY PRO GLY SER PRO ASN ASP ALA TYR THR ASP ASP SEQRES 33 B 605 ARG GLN ASP TYR VAL ALA ASN GLU VAL ALA THR ASP TYR SEQRES 34 B 605 ASN ALA GLY PHE SER SER ALA LEU ALA MET LEU VAL GLU SEQRES 35 B 605 GLU TYR GLY GLY THR PRO LEU ALA ASP PHE PRO PRO THR SEQRES 36 B 605 GLU GLU PRO ASP GLY PRO GLU ILE PHE VAL GLU ALA GLN SEQRES 37 B 605 ILE ASN THR PRO GLY THR THR PHE THR GLU ILE LYS ALA SEQRES 38 B 605 MET ILE ARG ASN GLN SER GLY TRP PRO ALA ARG MET LEU SEQRES 39 B 605 ASP LYS GLY THR PHE ARG TYR TRP PHE THR LEU ASP GLU SEQRES 40 B 605 GLY VAL ASP PRO ALA ASP ILE THR VAL SER SER ALA TYR SEQRES 41 B 605 ASN GLN CYS ALA THR PRO GLU ASP VAL HIS HIS VAL SER SEQRES 42 B 605 GLY ASP LEU TYR TYR VAL GLU ILE ASP CYS THR GLY GLU SEQRES 43 B 605 LYS ILE PHE PRO GLY GLY GLN SER GLU HIS ARG ARG GLU SEQRES 44 B 605 VAL GLN PHE ARG ILE ALA GLY GLY PRO GLY TRP ASP PRO SEQRES 45 B 605 SER ASN ASP TRP SER PHE GLN GLY ILE GLY ASN GLU LEU SEQRES 46 B 605 ALA PRO ALA PRO TYR ILE VAL LEU TYR ASP ASP GLY VAL SEQRES 47 B 605 PRO VAL TRP GLY THR ALA PRO HET BGC C 1 12 HET BGC C 2 11 HET BGC C 3 11 HET BGC D 1 12 HET BGC D 2 11 HET BGC D 3 11 HET BGC A6005 12 HET CA A3001 1 HET CA A3002 1 HET BGC B6015 12 HET CA B3003 1 HET CA B3004 1 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION FORMUL 3 BGC 8(C6 H12 O6) FORMUL 6 CA 4(CA 2+) FORMUL 11 HOH *1375(H2 O) HELIX 1 1 TYR A 6 ALA A 19 1 14 HELIX 2 2 ALA A 43 VAL A 45 5 3 HELIX 3 3 GLY A 63 GLU A 79 1 17 HELIX 4 4 PRO A 81 ARG A 86 1 6 HELIX 5 5 MET A 90 LYS A 106 1 17 HELIX 6 6 GLY A 121 HIS A 125 1 5 HELIX 7 7 ALA A 131 VAL A 133 5 3 HELIX 8 8 SER A 150 PHE A 167 1 18 HELIX 9 9 PRO A 172 THR A 191 1 20 HELIX 10 10 TYR A 196 ASP A 198 5 3 HELIX 11 11 GLN A 213 THR A 227 1 15 HELIX 12 12 ASP A 230 PHE A 242 1 13 HELIX 13 13 SER A 264 GLU A 274 1 11 HELIX 14 14 GLN A 278 TYR A 290 1 13 HELIX 15 15 ALA A 315 VAL A 332 1 18 HELIX 16 16 PRO A 336 ALA A 353 1 18 HELIX 17 17 ARG A 378 HIS A 381 1 4 HELIX 18 18 THR A 427 TYR A 429 5 3 HELIX 19 19 ALA A 431 TYR A 444 1 14 HELIX 20 20 PRO A 511 ASP A 513 5 3 HELIX 21 21 TRP A 576 PHE A 578 5 3 HELIX 22 22 TYR B 6 ALA B 19 1 14 HELIX 23 23 ALA B 43 VAL B 45 5 3 HELIX 24 24 GLY B 63 GLU B 79 1 17 HELIX 25 25 PRO B 81 ARG B 86 1 6 HELIX 26 26 MET B 90 LYS B 106 1 17 HELIX 27 27 GLY B 121 HIS B 125 1 5 HELIX 28 28 ALA B 131 VAL B 133 5 3 HELIX 29 29 SER B 150 PHE B 167 1 18 HELIX 30 30 PRO B 172 THR B 191 1 20 HELIX 31 31 TYR B 196 ASP B 198 5 3 HELIX 32 32 GLN B 213 THR B 227 1 15 HELIX 33 33 ASP B 230 PHE B 242 1 13 HELIX 34 34 SER B 264 GLU B 274 1 11 HELIX 35 35 GLN B 278 TYR B 290 1 13 HELIX 36 36 ALA B 315 VAL B 332 1 18 HELIX 37 37 PRO B 336 ALA B 353 1 18 HELIX 38 38 ARG B 378 HIS B 381 1 4 HELIX 39 39 TYR B 429 TYR B 444 1 16 HELIX 40 40 PRO B 511 ASP B 513 5 3 HELIX 41 41 PRO B 572 ASN B 574 5 3 SHEET 1 A 4 THR A 515 SER A 517 0 SHEET 2 A 4 ARG A 557 ALA A 565 -1 N ALA A 565 O THR A 515 SHEET 3 A 4 PHE A 476 ASN A 485 -1 N ILE A 483 O ARG A 558 SHEET 4 A 4 ILE A 463 THR A 471 -1 N THR A 471 O GLU A 478 SHEET 1 B 4 LEU A 536 ASP A 542 0 SHEET 2 B 4 GLY A 497 THR A 504 -1 N PHE A 503 O TYR A 537 SHEET 3 B 4 VAL A 592 ASP A 595 -1 N TYR A 594 O THR A 498 SHEET 4 B 4 VAL A 598 TRP A 601 -1 N TRP A 601 O LEU A 593 SHEET 1 C 2 LEU A 114 VAL A 118 0 SHEET 2 C 2 SER A 140 VAL A 143 -1 N VAL A 143 O LEU A 114 SHEET 1 D 4 ILE B 463 GLU B 466 0 SHEET 2 D 4 PHE B 476 ASN B 485 -1 N ARG B 484 O PHE B 464 SHEET 3 D 4 ARG B 557 ALA B 565 -1 N ILE B 564 O THR B 477 SHEET 4 D 4 THR B 515 SER B 517 -1 N SER B 517 O ARG B 563 SHEET 1 E 5 HIS B 530 SER B 533 0 SHEET 2 E 5 LEU B 536 ASP B 542 -1 N TYR B 538 O HIS B 530 SHEET 3 E 5 GLY B 497 THR B 504 -1 N PHE B 503 O TYR B 537 SHEET 4 E 5 VAL B 592 ASP B 595 -1 N TYR B 594 O THR B 498 SHEET 5 E 5 VAL B 598 TRP B 601 -1 N TRP B 601 O LEU B 593 SHEET 1 F 2 LEU B 114 VAL B 118 0 SHEET 2 F 2 SER B 140 VAL B 143 -1 N VAL B 143 O LEU B 114 SSBOND 1 CYS A 147 CYS A 199 1555 1555 2.03 SSBOND 2 CYS A 523 CYS A 543 1555 1555 2.02 SSBOND 3 CYS B 147 CYS B 199 1555 1555 2.02 SSBOND 4 CYS B 523 CYS B 543 1555 1555 2.01 LINK O4 BGC C 1 C1 BGC C 2 1555 1555 1.43 LINK O4 BGC C 2 C1 BGC C 3 1555 1555 1.43 LINK O4 BGC D 1 C1 BGC D 2 1555 1555 1.43 LINK O4 BGC D 2 C1 BGC D 3 1555 1555 1.42 LINK OG SER A 210 CA CA A3001 1555 1555 2.29 LINK O GLY A 211 CA CA A3001 1555 1555 2.36 LINK OD1 ASP A 214 CA CA A3001 1555 1555 2.09 LINK OD2 ASP A 214 CA CA A3001 1555 1555 2.12 LINK OE1 GLU A 215 CA CA A3001 1555 1555 2.27 LINK OE2 GLU A 215 CA CA A3001 1555 1555 2.23 LINK O ASP A 261 CA CA A3001 1555 1555 2.33 LINK O THR A 504 CA CA A3002 1555 1555 2.52 LINK OD1 ASP A 506 CA CA A3002 1555 1555 2.12 LINK OD2 ASP A 506 CA CA A3002 1555 1555 2.26 LINK O ASP A 571 CA CA A3002 1555 1555 2.12 LINK OD1 ASN A 574 CA CA A3002 1555 1555 2.04 LINK OD1 ASP A 575 CA CA A3002 1555 1555 2.71 LINK CA CA A3002 O HOH A6043 1555 1555 1.94 LINK OG SER B 210 CA CA B3003 1555 1555 2.34 LINK O GLY B 211 CA CA B3003 1555 1555 2.45 LINK OD1 ASP B 214 CA CA B3003 1555 1555 2.20 LINK OD2 ASP B 214 CA CA B3003 1555 1555 2.06 LINK OE1 GLU B 215 CA CA B3003 1555 1555 2.12 LINK OE2 GLU B 215 CA CA B3003 1555 1555 2.25 LINK O ASP B 261 CA CA B3003 1555 1555 2.41 LINK O THR B 504 CA CA B3004 1555 1555 2.36 LINK OD1 ASP B 506 CA CA B3004 1555 1555 2.24 LINK OD2 ASP B 506 CA CA B3004 1555 1555 2.22 LINK O ASP B 571 CA CA B3004 1555 1555 2.26 LINK OD1 ASN B 574 CA CA B3004 1555 1555 2.07 LINK OD1 ASP B 575 CA CA B3004 1555 1555 2.44 LINK CA CA B3003 O HOH B6017 1555 1555 1.76 LINK CA CA B3004 O HOH B6138 1555 1555 1.87 CISPEP 1 SER A 390 PRO A 391 0 -4.23 CISPEP 2 PHE A 452 PRO A 453 0 0.96 CISPEP 3 TRP A 489 PRO A 490 0 -3.48 CISPEP 4 SER B 390 PRO B 391 0 -4.13 CISPEP 5 PHE B 452 PRO B 453 0 1.02 CISPEP 6 TRP B 489 PRO B 490 0 -3.15 SITE 1 CA1 5 SER A 210 GLY A 211 ASP A 214 GLU A 215 SITE 2 CA1 5 ASP A 261 SITE 1 CA2 5 SER B 210 GLY B 211 ASP B 214 GLU B 215 SITE 2 CA2 5 ASP B 261 SITE 1 CA3 5 THR A 504 ASP A 506 ASP A 571 ASN A 574 SITE 2 CA3 5 ASP A 575 SITE 1 CA4 5 THR B 504 ASP B 506 ASP B 571 ASN B 574 SITE 2 CA4 5 ASP B 575 SITE 1 AA1 3 ASP A 55 ASP A 58 GLU A 424 SITE 1 AB1 3 ASP B 55 ASP B 58 GLU B 424 CRYST1 145.680 145.680 157.080 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006864 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006366 0.00000 MTRIX1 1 0.272878 0.698058 0.662007 -119.84378 1 MTRIX2 1 0.719232 -0.605037 0.341520 112.45155 1 MTRIX3 1 0.638939 0.382943 -0.667166 110.71117 1