PDB Short entry for 3TGF HEADER GROWTH FACTOR 23-JAN-91 3TGF TITLE THE SOLUTION STRUCTURE OF HUMAN TRANSFORMING GROWTH FACTOR ALPHA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSFORMING GROWTH FACTOR-ALPHA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS GROWTH FACTOR EXPDTA SOLUTION NMR NUMMDL 4 AUTHOR T.S.HARVEY,A.J.WILKINSON,M.J.TAPPIN,R.M.COOKE,I.D.CAMPBELL REVDAT 3 29-NOV-17 3TGF 1 REMARK HELIX REVDAT 2 24-FEB-09 3TGF 1 VERSN REVDAT 1 15-APR-93 3TGF 0 JRNL AUTH T.S.HARVEY,A.J.WILKINSON,M.J.TAPPIN,R.M.COOKE,I.D.CAMPBELL JRNL TITL THE SOLUTION STRUCTURE OF HUMAN TRANSFORMING GROWTH FACTOR JRNL TITL 2 ALPHA. JRNL REF EUR.J.BIOCHEM. V. 198 555 1991 JRNL REFN ISSN 0014-2956 JRNL PMID 2050136 JRNL DOI 10.1111/J.1432-1033.1991.TB16050.X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TGF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000179162. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 4 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 9 HG1 THR A 13 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 2 109.49 61.08 REMARK 500 1 ASP A 7 95.47 -166.02 REMARK 500 1 PRO A 9 172.25 -57.91 REMARK 500 1 SER A 11 93.49 -67.63 REMARK 500 1 HIS A 12 99.02 52.21 REMARK 500 1 THR A 13 47.10 -83.68 REMARK 500 1 GLN A 14 -46.82 64.89 REMARK 500 1 HIS A 18 63.45 -115.26 REMARK 500 1 PHE A 23 89.91 -69.52 REMARK 500 1 LEU A 24 88.55 -64.20 REMARK 500 1 SER A 36 107.81 -53.02 REMARK 500 1 ALA A 41 -75.09 60.16 REMARK 500 1 CYS A 43 62.93 23.48 REMARK 500 1 ASP A 47 100.31 -59.11 REMARK 500 1 LEU A 48 -44.87 82.13 REMARK 500 2 SER A 3 -76.12 -152.69 REMARK 500 2 SER A 11 -89.71 -125.64 REMARK 500 2 THR A 13 34.10 -73.63 REMARK 500 2 PHE A 17 -75.64 -103.30 REMARK 500 2 HIS A 18 52.50 -96.86 REMARK 500 2 LEU A 24 93.42 -69.93 REMARK 500 2 SER A 36 103.40 -59.42 REMARK 500 2 CYS A 43 81.63 44.33 REMARK 500 2 GLU A 44 -31.84 -142.08 REMARK 500 2 LEU A 49 46.00 -85.82 REMARK 500 3 ASP A 7 106.83 -49.64 REMARK 500 3 SER A 11 101.75 -168.00 REMARK 500 3 HIS A 12 -39.36 70.66 REMARK 500 3 THR A 13 55.48 -62.16 REMARK 500 3 GLN A 14 -71.71 -125.13 REMARK 500 3 PHE A 15 -25.79 51.61 REMARK 500 3 PHE A 17 -78.43 -86.82 REMARK 500 3 HIS A 18 57.38 -100.13 REMARK 500 3 SER A 36 105.82 -40.09 REMARK 500 3 CYS A 43 75.28 38.05 REMARK 500 4 SER A 3 85.76 -66.07 REMARK 500 4 ASN A 6 -104.39 38.79 REMARK 500 4 ASP A 7 136.84 -173.45 REMARK 500 4 ASP A 28 29.44 49.57 REMARK 500 4 PRO A 30 48.78 -83.90 REMARK 500 4 SER A 36 107.77 -51.09 REMARK 500 4 ALA A 41 -67.72 61.73 REMARK 500 4 LEU A 49 -60.05 -170.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 11 HIS A 12 1 -149.74 REMARK 500 ALA A 31 CYS A 32 1 -148.73 REMARK 500 VAL A 39 GLY A 40 1 -129.90 REMARK 500 ALA A 31 CYS A 32 2 -149.16 REMARK 500 GLN A 14 PHE A 15 4 146.63 REMARK 500 VAL A 39 GLY A 40 4 -129.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 38 0.18 SIDE CHAIN REMARK 500 2 PHE A 15 0.10 SIDE CHAIN REMARK 500 3 PHE A 15 0.10 SIDE CHAIN REMARK 500 3 TYR A 38 0.18 SIDE CHAIN REMARK 500 4 TYR A 38 0.18 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 2 ASP A 28 -10.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2TGF RELATED DB: PDB DBREF 3TGF A 1 50 UNP P01135 TGFA_HUMAN 40 89 SEQRES 1 A 50 VAL VAL SER HIS PHE ASN ASP CYS PRO ASP SER HIS THR SEQRES 2 A 50 GLN PHE CYS PHE HIS GLY THR CYS ARG PHE LEU VAL GLN SEQRES 3 A 50 GLU ASP LYS PRO ALA CYS VAL CYS HIS SER GLY TYR VAL SEQRES 4 A 50 GLY ALA ARG CYS GLU HIS ALA ASP LEU LEU ALA SHEET 1 S1 2 GLY A 19 LEU A 24 0 SHEET 2 S1 2 LYS A 29 CYS A 34 -1 SHEET 1 S2 2 TYR A 38 VAL A 39 0 SHEET 2 S2 2 HIS A 45 ASP A 47 -1 SSBOND 1 CYS A 8 CYS A 21 1555 1555 2.04 SSBOND 2 CYS A 16 CYS A 32 1555 1555 2.04 SSBOND 3 CYS A 34 CYS A 43 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000