PDB Short entry for 3TH5 HEADER SIGNALING PROTEIN 18-AUG-11 3TH5 TITLE CRYSTAL STRUCTURE OF WILD-TYPE RAC1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2-177; COMPND 5 SYNONYM: CELL MIGRATION-INDUCING GENE 5 PROTEIN, RAS-LIKE PROTEIN COMPND 6 TC25, P21-RAC1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAC1, TC25, MIG5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: MODIFIED PET-28 KEYWDS ROSSMANN FOLD, GTPASE, GTP BINDING, PROTEIN BINDING, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.H.HA,T.J.BOGGON REVDAT 5 13-SEP-23 3TH5 1 REMARK SEQADV LINK REVDAT 4 12-DEC-12 3TH5 1 REMARK REVDAT 3 19-SEP-12 3TH5 1 JRNL REVDAT 2 29-AUG-12 3TH5 1 JRNL REVDAT 1 18-JUL-12 3TH5 0 JRNL AUTH M.KRAUTHAMMER,Y.KONG,B.H.HA,P.EVANS,A.BACCHIOCCHI, JRNL AUTH 2 J.P.MCCUSKER,E.CHENG,M.J.DAVIS,G.GOH,M.CHOI,S.ARIYAN, JRNL AUTH 3 D.NARAYAN,K.DUTTON-REGESTER,A.CAPATANA,E.C.HOLMAN, JRNL AUTH 4 M.BOSENBERG,M.SZNOL,H.M.KLUGER,D.E.BRASH,D.F.STERN, JRNL AUTH 5 M.A.MATERIN,R.S.LO,S.MANE,S.MA,K.K.KIDD,N.K.HAYWARD, JRNL AUTH 6 R.P.LIFTON,J.SCHLESSINGER,T.J.BOGGON,R.HALABAN JRNL TITL EXOME SEQUENCING IDENTIFIES RECURRENT SOMATIC RAC1 MUTATIONS JRNL TITL 2 IN MELANOMA. JRNL REF NAT.GENET. V. 44 1006 2012 JRNL REFN ISSN 1061-4036 JRNL PMID 22842228 JRNL DOI 10.1038/NG.2359 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 17830 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 910 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1259 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.4210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2710 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.48000 REMARK 3 B22 (A**2) : -2.34000 REMARK 3 B33 (A**2) : 0.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.253 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.250 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.911 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2863 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3915 ; 1.106 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 352 ; 5.041 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;39.487 ;24.397 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 482 ;14.714 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.567 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 451 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2107 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1744 ; 0.204 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2842 ; 0.385 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1119 ; 0.500 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1069 ; 0.827 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 177 4 REMARK 3 1 B 2 B 177 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1311 ; 0.23 ; 0.50 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1311 ; 0.12 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): -2.6680 -6.6970 -2.2400 REMARK 3 T TENSOR REMARK 3 T11: 0.2623 T22: 0.7249 REMARK 3 T33: 0.5935 T12: 0.0258 REMARK 3 T13: -0.0463 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 8.6763 L22: 5.6796 REMARK 3 L33: 8.9141 L12: 1.2895 REMARK 3 L13: 1.7593 L23: -0.0740 REMARK 3 S TENSOR REMARK 3 S11: -0.2774 S12: -0.2464 S13: 1.6547 REMARK 3 S21: -0.1156 S22: 0.1816 S23: 0.2893 REMARK 3 S31: -0.9330 S32: -0.2306 S33: 0.0958 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): -4.6580 -21.1840 -3.7070 REMARK 3 T TENSOR REMARK 3 T11: 0.1577 T22: 0.8582 REMARK 3 T33: 0.2593 T12: -0.0107 REMARK 3 T13: -0.0297 T23: 0.0461 REMARK 3 L TENSOR REMARK 3 L11: 4.5940 L22: 3.1818 REMARK 3 L33: 6.0691 L12: 0.9611 REMARK 3 L13: 0.3057 L23: -0.3342 REMARK 3 S TENSOR REMARK 3 S11: 0.0760 S12: -0.0933 S13: -0.0102 REMARK 3 S21: -0.2231 S22: 0.1027 S23: 0.0196 REMARK 3 S31: 0.3048 S32: -0.3128 S33: -0.1787 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 76 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3570 -40.1460 -27.3570 REMARK 3 T TENSOR REMARK 3 T11: 0.2766 T22: 0.8137 REMARK 3 T33: 0.6506 T12: 0.0370 REMARK 3 T13: 0.0592 T23: -0.0580 REMARK 3 L TENSOR REMARK 3 L11: 9.5918 L22: 5.6657 REMARK 3 L33: 7.8487 L12: 1.3888 REMARK 3 L13: -2.5051 L23: -0.7769 REMARK 3 S TENSOR REMARK 3 S11: -0.2911 S12: -0.0883 S13: -1.6185 REMARK 3 S21: -0.0718 S22: 0.3042 S23: -0.3715 REMARK 3 S31: 1.3454 S32: 0.0227 S33: -0.0131 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 77 B 177 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3090 -25.6200 -28.2400 REMARK 3 T TENSOR REMARK 3 T11: 0.0385 T22: 0.8921 REMARK 3 T33: 0.2870 T12: 0.0138 REMARK 3 T13: 0.0157 T23: -0.0602 REMARK 3 L TENSOR REMARK 3 L11: 5.3630 L22: 6.4646 REMARK 3 L33: 5.4203 L12: -0.0391 REMARK 3 L13: -0.1218 L23: -0.8359 REMARK 3 S TENSOR REMARK 3 S11: -0.1017 S12: 0.0620 S13: 0.0129 REMARK 3 S21: -0.0093 S22: 0.1128 S23: -0.4189 REMARK 3 S31: -0.1188 S32: 0.4167 S33: -0.0112 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3TH5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067471. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18169 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3SBD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG4000, 7% ISOPROPANOL, 0.1M REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.92550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -26 REMARK 465 GLY A -25 REMARK 465 SER A -24 REMARK 465 SER A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 LEU A -13 REMARK 465 VAL A -12 REMARK 465 PRO A -11 REMARK 465 ARG A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 MET A -6 REMARK 465 GLU A -5 REMARK 465 ASN A -4 REMARK 465 LEU A -3 REMARK 465 TYR A -2 REMARK 465 PHE A -1 REMARK 465 GLN A 0 REMARK 465 GLY A 1 REMARK 465 MET B -26 REMARK 465 GLY B -25 REMARK 465 SER B -24 REMARK 465 SER B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 GLY B -14 REMARK 465 LEU B -13 REMARK 465 VAL B -12 REMARK 465 PRO B -11 REMARK 465 ARG B -10 REMARK 465 GLY B -9 REMARK 465 SER B -8 REMARK 465 HIS B -7 REMARK 465 MET B -6 REMARK 465 GLU B -5 REMARK 465 ASN B -4 REMARK 465 LEU B -3 REMARK 465 TYR B -2 REMARK 465 PHE B -1 REMARK 465 GLN B 0 REMARK 465 GLY B 1 REMARK 465 GLY B 30 REMARK 465 GLU B 31 REMARK 465 TYR B 32 REMARK 465 ILE B 33 REMARK 465 PRO B 34 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 36 -61.68 -95.17 REMARK 500 PHE A 37 122.35 -172.20 REMARK 500 LYS A 96 -53.32 -124.28 REMARK 500 ALA B 13 15.22 86.51 REMARK 500 PHE B 37 130.18 -172.42 REMARK 500 LYS B 96 -53.47 -120.67 REMARK 500 ASP B 121 64.38 -108.55 REMARK 500 LYS B 123 -81.26 -51.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 17 OG1 REMARK 620 2 THR A 35 OG1 82.5 REMARK 620 3 HOH A 187 O 91.2 83.4 REMARK 620 4 HOH A 188 O 87.4 97.6 178.2 REMARK 620 5 GNP A1001 O2G 171.8 92.6 81.6 99.8 REMARK 620 6 GNP A1001 O2B 97.4 168.7 85.3 93.7 86.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 17 OG1 REMARK 620 2 THR B 35 OG1 81.4 REMARK 620 3 HOH B 184 O 79.8 72.5 REMARK 620 4 HOH B 186 O 109.5 106.3 170.5 REMARK 620 5 GNP B1001 O2B 95.5 152.1 79.7 100.9 REMARK 620 6 GNP B1001 O2G 158.6 86.8 79.6 90.9 86.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SBD RELATED DB: PDB REMARK 900 RELATED ID: 3SBE RELATED DB: PDB REMARK 900 RELATED ID: 4GZL RELATED DB: PDB REMARK 900 RELATED ID: 4GZM RELATED DB: PDB DBREF 3TH5 A 2 177 UNP P63000 RAC1_HUMAN 2 177 DBREF 3TH5 B 2 177 UNP P63000 RAC1_HUMAN 2 177 SEQADV 3TH5 MET A -26 UNP P63000 EXPRESSION TAG SEQADV 3TH5 GLY A -25 UNP P63000 EXPRESSION TAG SEQADV 3TH5 SER A -24 UNP P63000 EXPRESSION TAG SEQADV 3TH5 SER A -23 UNP P63000 EXPRESSION TAG SEQADV 3TH5 HIS A -22 UNP P63000 EXPRESSION TAG SEQADV 3TH5 HIS A -21 UNP P63000 EXPRESSION TAG SEQADV 3TH5 HIS A -20 UNP P63000 EXPRESSION TAG SEQADV 3TH5 HIS A -19 UNP P63000 EXPRESSION TAG SEQADV 3TH5 HIS A -18 UNP P63000 EXPRESSION TAG SEQADV 3TH5 HIS A -17 UNP P63000 EXPRESSION TAG SEQADV 3TH5 SER A -16 UNP P63000 EXPRESSION TAG SEQADV 3TH5 SER A -15 UNP P63000 EXPRESSION TAG SEQADV 3TH5 GLY A -14 UNP P63000 EXPRESSION TAG SEQADV 3TH5 LEU A -13 UNP P63000 EXPRESSION TAG SEQADV 3TH5 VAL A -12 UNP P63000 EXPRESSION TAG SEQADV 3TH5 PRO A -11 UNP P63000 EXPRESSION TAG SEQADV 3TH5 ARG A -10 UNP P63000 EXPRESSION TAG SEQADV 3TH5 GLY A -9 UNP P63000 EXPRESSION TAG SEQADV 3TH5 SER A -8 UNP P63000 EXPRESSION TAG SEQADV 3TH5 HIS A -7 UNP P63000 EXPRESSION TAG SEQADV 3TH5 MET A -6 UNP P63000 EXPRESSION TAG SEQADV 3TH5 GLU A -5 UNP P63000 EXPRESSION TAG SEQADV 3TH5 ASN A -4 UNP P63000 EXPRESSION TAG SEQADV 3TH5 LEU A -3 UNP P63000 EXPRESSION TAG SEQADV 3TH5 TYR A -2 UNP P63000 EXPRESSION TAG SEQADV 3TH5 PHE A -1 UNP P63000 EXPRESSION TAG SEQADV 3TH5 GLN A 0 UNP P63000 EXPRESSION TAG SEQADV 3TH5 GLY A 1 UNP P63000 EXPRESSION TAG SEQADV 3TH5 MET B -26 UNP P63000 EXPRESSION TAG SEQADV 3TH5 GLY B -25 UNP P63000 EXPRESSION TAG SEQADV 3TH5 SER B -24 UNP P63000 EXPRESSION TAG SEQADV 3TH5 SER B -23 UNP P63000 EXPRESSION TAG SEQADV 3TH5 HIS B -22 UNP P63000 EXPRESSION TAG SEQADV 3TH5 HIS B -21 UNP P63000 EXPRESSION TAG SEQADV 3TH5 HIS B -20 UNP P63000 EXPRESSION TAG SEQADV 3TH5 HIS B -19 UNP P63000 EXPRESSION TAG SEQADV 3TH5 HIS B -18 UNP P63000 EXPRESSION TAG SEQADV 3TH5 HIS B -17 UNP P63000 EXPRESSION TAG SEQADV 3TH5 SER B -16 UNP P63000 EXPRESSION TAG SEQADV 3TH5 SER B -15 UNP P63000 EXPRESSION TAG SEQADV 3TH5 GLY B -14 UNP P63000 EXPRESSION TAG SEQADV 3TH5 LEU B -13 UNP P63000 EXPRESSION TAG SEQADV 3TH5 VAL B -12 UNP P63000 EXPRESSION TAG SEQADV 3TH5 PRO B -11 UNP P63000 EXPRESSION TAG SEQADV 3TH5 ARG B -10 UNP P63000 EXPRESSION TAG SEQADV 3TH5 GLY B -9 UNP P63000 EXPRESSION TAG SEQADV 3TH5 SER B -8 UNP P63000 EXPRESSION TAG SEQADV 3TH5 HIS B -7 UNP P63000 EXPRESSION TAG SEQADV 3TH5 MET B -6 UNP P63000 EXPRESSION TAG SEQADV 3TH5 GLU B -5 UNP P63000 EXPRESSION TAG SEQADV 3TH5 ASN B -4 UNP P63000 EXPRESSION TAG SEQADV 3TH5 LEU B -3 UNP P63000 EXPRESSION TAG SEQADV 3TH5 TYR B -2 UNP P63000 EXPRESSION TAG SEQADV 3TH5 PHE B -1 UNP P63000 EXPRESSION TAG SEQADV 3TH5 GLN B 0 UNP P63000 EXPRESSION TAG SEQADV 3TH5 GLY B 1 UNP P63000 EXPRESSION TAG SEQRES 1 A 204 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 204 LEU VAL PRO ARG GLY SER HIS MET GLU ASN LEU TYR PHE SEQRES 3 A 204 GLN GLY GLN ALA ILE LYS CYS VAL VAL VAL GLY ASP GLY SEQRES 4 A 204 ALA VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR SEQRES 5 A 204 ASN ALA PHE PRO GLY GLU TYR ILE PRO THR VAL PHE ASP SEQRES 6 A 204 ASN TYR SER ALA ASN VAL MET VAL ASP GLY LYS PRO VAL SEQRES 7 A 204 ASN LEU GLY LEU TRP ASP THR ALA GLY GLN GLU ASP TYR SEQRES 8 A 204 ASP ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL SEQRES 9 A 204 PHE LEU ILE CYS PHE SER LEU VAL SER PRO ALA SER PHE SEQRES 10 A 204 GLU ASN VAL ARG ALA LYS TRP TYR PRO GLU VAL ARG HIS SEQRES 11 A 204 HIS CYS PRO ASN THR PRO ILE ILE LEU VAL GLY THR LYS SEQRES 12 A 204 LEU ASP LEU ARG ASP ASP LYS ASP THR ILE GLU LYS LEU SEQRES 13 A 204 LYS GLU LYS LYS LEU THR PRO ILE THR TYR PRO GLN GLY SEQRES 14 A 204 LEU ALA MET ALA LYS GLU ILE GLY ALA VAL LYS TYR LEU SEQRES 15 A 204 GLU CYS SER ALA LEU THR GLN ARG GLY LEU LYS THR VAL SEQRES 16 A 204 PHE ASP GLU ALA ILE ARG ALA VAL LEU SEQRES 1 B 204 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 204 LEU VAL PRO ARG GLY SER HIS MET GLU ASN LEU TYR PHE SEQRES 3 B 204 GLN GLY GLN ALA ILE LYS CYS VAL VAL VAL GLY ASP GLY SEQRES 4 B 204 ALA VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR SEQRES 5 B 204 ASN ALA PHE PRO GLY GLU TYR ILE PRO THR VAL PHE ASP SEQRES 6 B 204 ASN TYR SER ALA ASN VAL MET VAL ASP GLY LYS PRO VAL SEQRES 7 B 204 ASN LEU GLY LEU TRP ASP THR ALA GLY GLN GLU ASP TYR SEQRES 8 B 204 ASP ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL SEQRES 9 B 204 PHE LEU ILE CYS PHE SER LEU VAL SER PRO ALA SER PHE SEQRES 10 B 204 GLU ASN VAL ARG ALA LYS TRP TYR PRO GLU VAL ARG HIS SEQRES 11 B 204 HIS CYS PRO ASN THR PRO ILE ILE LEU VAL GLY THR LYS SEQRES 12 B 204 LEU ASP LEU ARG ASP ASP LYS ASP THR ILE GLU LYS LEU SEQRES 13 B 204 LYS GLU LYS LYS LEU THR PRO ILE THR TYR PRO GLN GLY SEQRES 14 B 204 LEU ALA MET ALA LYS GLU ILE GLY ALA VAL LYS TYR LEU SEQRES 15 B 204 GLU CYS SER ALA LEU THR GLN ARG GLY LEU LYS THR VAL SEQRES 16 B 204 PHE ASP GLU ALA ILE ARG ALA VAL LEU HET GNP A1001 32 HET MG A1002 1 HET GNP B1001 32 HET MG B1002 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 3 GNP 2(C10 H17 N6 O13 P3) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *23(H2 O) HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 GLN A 61 ASP A 65 5 5 HELIX 3 3 LEU A 67 TYR A 72 5 6 HELIX 4 4 SER A 86 LYS A 96 1 11 HELIX 5 5 LYS A 96 CYS A 105 1 10 HELIX 6 6 LYS A 116 ASP A 121 5 6 HELIX 7 7 ASP A 122 GLU A 131 1 10 HELIX 8 8 THR A 138 ILE A 149 1 12 HELIX 9 9 GLY A 164 ALA A 175 1 12 HELIX 10 10 GLY B 15 ASN B 26 1 12 HELIX 11 11 GLN B 61 ASP B 65 5 5 HELIX 12 12 LEU B 67 TYR B 72 5 6 HELIX 13 13 SER B 86 LYS B 96 1 11 HELIX 14 14 LYS B 96 CYS B 105 1 10 HELIX 15 15 LYS B 116 ASP B 121 1 6 HELIX 16 16 ASP B 122 GLU B 131 1 10 HELIX 17 17 THR B 138 ILE B 149 1 12 HELIX 18 18 GLY B 164 ALA B 175 1 12 SHEET 1 A 6 PHE A 37 VAL A 46 0 SHEET 2 A 6 LYS A 49 THR A 58 -1 O LEU A 55 N TYR A 40 SHEET 3 A 6 ALA A 3 GLY A 10 1 N CYS A 6 O GLY A 54 SHEET 4 A 6 VAL A 77 SER A 83 1 O LEU A 79 N VAL A 7 SHEET 5 A 6 ILE A 110 THR A 115 1 O ILE A 111 N PHE A 78 SHEET 6 A 6 LYS A 153 GLU A 156 1 O LYS A 153 N LEU A 112 SHEET 1 B 6 ASP B 38 VAL B 46 0 SHEET 2 B 6 LYS B 49 ASP B 57 -1 O LEU B 55 N TYR B 40 SHEET 3 B 6 ALA B 3 GLY B 10 1 N ILE B 4 O GLY B 54 SHEET 4 B 6 VAL B 77 SER B 83 1 O LEU B 79 N VAL B 9 SHEET 5 B 6 ILE B 110 THR B 115 1 O VAL B 113 N ILE B 80 SHEET 6 B 6 LYS B 153 GLU B 156 1 O LEU B 155 N GLY B 114 LINK OG1 THR A 17 MG MG A1002 1555 1555 2.12 LINK OG1 THR A 35 MG MG A1002 1555 1555 1.84 LINK O HOH A 187 MG MG A1002 1555 1555 2.40 LINK O HOH A 188 MG MG A1002 1555 1555 2.03 LINK O2G GNP A1001 MG MG A1002 1555 1555 1.94 LINK O2B GNP A1001 MG MG A1002 1555 1555 2.00 LINK OG1 THR B 17 MG MG B1002 1555 1555 1.88 LINK OG1 THR B 35 MG MG B1002 1555 1555 2.23 LINK O HOH B 184 MG MG B1002 1555 1555 2.26 LINK O HOH B 186 MG MG B1002 1555 1555 1.95 LINK O2B GNP B1001 MG MG B1002 1555 1555 1.99 LINK O2G GNP B1001 MG MG B1002 1555 1555 2.00 SITE 1 AC1 21 GLY A 12 ALA A 13 VAL A 14 GLY A 15 SITE 2 AC1 21 LYS A 16 THR A 17 CYS A 18 PHE A 28 SITE 3 AC1 21 TYR A 32 THR A 35 GLY A 60 LYS A 116 SITE 4 AC1 21 ASP A 118 LEU A 119 SER A 158 ALA A 159 SITE 5 AC1 21 LEU A 160 HOH A 180 HOH A 187 HOH A 188 SITE 6 AC1 21 MG A1002 SITE 1 AC2 5 THR A 17 THR A 35 HOH A 187 HOH A 188 SITE 2 AC2 5 GNP A1001 SITE 1 AC3 19 GLY B 12 ALA B 13 VAL B 14 GLY B 15 SITE 2 AC3 19 LYS B 16 THR B 17 CYS B 18 PHE B 28 SITE 3 AC3 19 THR B 35 GLY B 60 LYS B 116 ASP B 118 SITE 4 AC3 19 LEU B 119 SER B 158 ALA B 159 LEU B 160 SITE 5 AC3 19 HOH B 184 HOH B 186 MG B1002 SITE 1 AC4 6 THR B 17 THR B 35 ASP B 57 HOH B 184 SITE 2 AC4 6 HOH B 186 GNP B1001 CRYST1 40.925 97.851 51.733 90.00 96.59 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024435 0.000000 0.002823 0.00000 SCALE2 0.000000 0.010220 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019459 0.00000