PDB Short entry for 3THR HEADER TRANSFERASE/TRANSFERASE INHIBITOR 19-AUG-11 3THR TITLE CRYSTAL STRUCTURE OF RAT NATIVE LIVER GLYCINE N-METHYLTRANSFERASE TITLE 2 COMPLEXED WITH 5-METHYLTETRAHYDROFOLATE MONOGLUTAMATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCINE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: FOLATE-BINDING PROTEIN; COMPND 5 EC: 2.1.1.20 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116 KEYWDS GLYCINE N-METHYLTRANSFERASE, GNMT, FOLATE, METHYLTRANSFERASE, FOLATE KEYWDS 2 BINDING, LIVER CYTOSOL, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.LUKA,S.PAKHOMOVA,L.V.LOUKACHEVITCH,M.E.NEWCOMER,C.WAGNER REVDAT 3 13-SEP-23 3THR 1 REMARK SEQADV LINK REVDAT 2 11-JAN-12 3THR 1 JRNL REVDAT 1 16-NOV-11 3THR 0 JRNL AUTH Z.LUKA,S.PAKHOMOVA,L.V.LOUKACHEVITCH,M.E.NEWCOMER,C.WAGNER JRNL TITL DIFFERENCES IN FOLATE-PROTEIN INTERACTIONS RESULT IN JRNL TITL 2 DIFFERING INHIBITION OF NATIVE RAT LIVER AND RECOMBINANT JRNL TITL 3 GLYCINE N-METHYLTRANSFERASE BY 5-METHYLTETRAHYDROFOLATE. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1824 286 2011 JRNL REFN ISSN 0006-3002 JRNL PMID 22037183 JRNL DOI 10.1016/J.BBAPAP.2011.10.008 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.1 REMARK 3 NUMBER OF REFLECTIONS : 73600 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 3723 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8984 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 165 REMARK 3 SOLVENT ATOMS : 725 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.95000 REMARK 3 B22 (A**2) : -1.52000 REMARK 3 B33 (A**2) : -1.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.978 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3THR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067492. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83512 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.61000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2IDK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2 M NA-FLUORIDE OR CA REMARK 280 -ACETATE, 100 MM TRIS-HCL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.89400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 226 REMARK 465 ALA A 227 REMARK 465 GLY A 228 REMARK 465 ARG A 229 REMARK 465 ASP A 230 REMARK 465 GLY A 231 REMARK 465 ALA B 227 REMARK 465 GLY B 228 REMARK 465 ARG B 229 REMARK 465 ASP B 230 REMARK 465 GLY B 231 REMARK 465 ALA B 232 REMARK 465 PRO C 225 REMARK 465 GLY C 226 REMARK 465 ALA C 227 REMARK 465 GLY C 228 REMARK 465 ARG C 229 REMARK 465 ASP C 230 REMARK 465 GLY C 231 REMARK 465 ALA C 232 REMARK 465 GLY D 226 REMARK 465 ALA D 227 REMARK 465 GLY D 228 REMARK 465 ARG D 229 REMARK 465 ASP D 230 REMARK 465 GLY D 231 REMARK 465 ALA D 232 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO B 233 CG CD REMARK 470 GLN D 223 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 381 O HOH C 713 2.04 REMARK 500 OD2 ASP C 2 O HOH C 705 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 5 CD1 TYR B 5 CE1 -0.105 REMARK 500 TYR B 5 CE2 TYR B 5 CD2 -0.116 REMARK 500 TYR C 5 CD1 TYR C 5 CE1 -0.117 REMARK 500 ALA C 94 CA ALA C 94 CB 0.137 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 121 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 PRO B 233 N - CA - CB ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG C 28 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG C 40 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 MET C 73 CG - SD - CE ANGL. DEV. = -12.4 DEGREES REMARK 500 LEU C 91 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG C 274 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG C 274 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 LEU D 91 CB - CG - CD1 ANGL. DEV. = 12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 21 17.31 58.60 REMARK 500 PHE A 270 -7.60 78.01 REMARK 500 ASP B 145 75.22 -107.25 REMARK 500 PHE B 270 -11.92 81.16 REMARK 500 ASP C 36 49.60 -73.83 REMARK 500 CYS C 135 84.91 -152.63 REMARK 500 HIS C 214 -34.81 -131.99 REMARK 500 PHE C 270 -10.87 87.80 REMARK 500 GLN D 150 28.15 48.58 REMARK 500 PHE D 235 80.72 -163.62 REMARK 500 PHE D 270 -12.17 76.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 291 GLY A 292 -148.08 REMARK 500 GLY D 234 PHE D 235 -148.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2F A 1100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAM A 1500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2F B 1700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2F C 1410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAM C 1600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2F D 1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAM D 1400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3THS RELATED DB: PDB REMARK 900 RELATED ID: 2IDK RELATED DB: PDB DBREF 3THR A 1 292 UNP P13255 GNMT_RAT 2 293 DBREF 3THR B 1 292 UNP P13255 GNMT_RAT 2 293 DBREF 3THR C 1 292 UNP P13255 GNMT_RAT 2 293 DBREF 3THR D 1 292 UNP P13255 GNMT_RAT 2 293 SEQADV 3THR ACE A 300 UNP P13255 ACETYLATION SEQADV 3THR ACE B 300 UNP P13255 ACETYLATION SEQADV 3THR ACE C 300 UNP P13255 ACETYLATION SEQADV 3THR ACE D 300 UNP P13255 ACETYLATION SEQRES 1 A 293 ACE VAL ASP SER VAL TYR ARG THR ARG SER LEU GLY VAL SEQRES 2 A 293 ALA ALA GLU GLY ILE PRO ASP GLN TYR ALA ASP GLY GLU SEQRES 3 A 293 ALA ALA ARG VAL TRP GLN LEU TYR ILE GLY ASP THR ARG SEQRES 4 A 293 SER ARG THR ALA GLU TYR LYS ALA TRP LEU LEU GLY LEU SEQRES 5 A 293 LEU ARG GLN HIS GLY CYS HIS ARG VAL LEU ASP VAL ALA SEQRES 6 A 293 CYS GLY THR GLY VAL ASP SER ILE MET LEU VAL GLU GLU SEQRES 7 A 293 GLY PHE SER VAL THR SER VAL ASP ALA SER ASP LYS MET SEQRES 8 A 293 LEU LYS TYR ALA LEU LYS GLU ARG TRP ASN ARG ARG LYS SEQRES 9 A 293 GLU PRO ALA PHE ASP LYS TRP VAL ILE GLU GLU ALA ASN SEQRES 10 A 293 TRP LEU THR LEU ASP LYS ASP VAL PRO ALA GLY ASP GLY SEQRES 11 A 293 PHE ASP ALA VAL ILE CYS LEU GLY ASN SER PHE ALA HIS SEQRES 12 A 293 LEU PRO ASP SER LYS GLY ASP GLN SER GLU HIS ARG LEU SEQRES 13 A 293 ALA LEU LYS ASN ILE ALA SER MET VAL ARG PRO GLY GLY SEQRES 14 A 293 LEU LEU VAL ILE ASP HIS ARG ASN TYR ASP TYR ILE LEU SEQRES 15 A 293 SER THR GLY CYS ALA PRO PRO GLY LYS ASN ILE TYR TYR SEQRES 16 A 293 LYS SER ASP LEU THR LYS ASP ILE THR THR SER VAL LEU SEQRES 17 A 293 THR VAL ASN ASN LYS ALA HIS MET VAL THR LEU ASP TYR SEQRES 18 A 293 THR VAL GLN VAL PRO GLY ALA GLY ARG ASP GLY ALA PRO SEQRES 19 A 293 GLY PHE SER LYS PHE ARG LEU SER TYR TYR PRO HIS CYS SEQRES 20 A 293 LEU ALA SER PHE THR GLU LEU VAL GLN GLU ALA PHE GLY SEQRES 21 A 293 GLY ARG CYS GLN HIS SER VAL LEU GLY ASP PHE LYS PRO SEQRES 22 A 293 TYR ARG PRO GLY GLN ALA TYR VAL PRO CYS TYR PHE ILE SEQRES 23 A 293 HIS VAL LEU LYS LYS THR GLY SEQRES 1 B 293 ACE VAL ASP SER VAL TYR ARG THR ARG SER LEU GLY VAL SEQRES 2 B 293 ALA ALA GLU GLY ILE PRO ASP GLN TYR ALA ASP GLY GLU SEQRES 3 B 293 ALA ALA ARG VAL TRP GLN LEU TYR ILE GLY ASP THR ARG SEQRES 4 B 293 SER ARG THR ALA GLU TYR LYS ALA TRP LEU LEU GLY LEU SEQRES 5 B 293 LEU ARG GLN HIS GLY CYS HIS ARG VAL LEU ASP VAL ALA SEQRES 6 B 293 CYS GLY THR GLY VAL ASP SER ILE MET LEU VAL GLU GLU SEQRES 7 B 293 GLY PHE SER VAL THR SER VAL ASP ALA SER ASP LYS MET SEQRES 8 B 293 LEU LYS TYR ALA LEU LYS GLU ARG TRP ASN ARG ARG LYS SEQRES 9 B 293 GLU PRO ALA PHE ASP LYS TRP VAL ILE GLU GLU ALA ASN SEQRES 10 B 293 TRP LEU THR LEU ASP LYS ASP VAL PRO ALA GLY ASP GLY SEQRES 11 B 293 PHE ASP ALA VAL ILE CYS LEU GLY ASN SER PHE ALA HIS SEQRES 12 B 293 LEU PRO ASP SER LYS GLY ASP GLN SER GLU HIS ARG LEU SEQRES 13 B 293 ALA LEU LYS ASN ILE ALA SER MET VAL ARG PRO GLY GLY SEQRES 14 B 293 LEU LEU VAL ILE ASP HIS ARG ASN TYR ASP TYR ILE LEU SEQRES 15 B 293 SER THR GLY CYS ALA PRO PRO GLY LYS ASN ILE TYR TYR SEQRES 16 B 293 LYS SER ASP LEU THR LYS ASP ILE THR THR SER VAL LEU SEQRES 17 B 293 THR VAL ASN ASN LYS ALA HIS MET VAL THR LEU ASP TYR SEQRES 18 B 293 THR VAL GLN VAL PRO GLY ALA GLY ARG ASP GLY ALA PRO SEQRES 19 B 293 GLY PHE SER LYS PHE ARG LEU SER TYR TYR PRO HIS CYS SEQRES 20 B 293 LEU ALA SER PHE THR GLU LEU VAL GLN GLU ALA PHE GLY SEQRES 21 B 293 GLY ARG CYS GLN HIS SER VAL LEU GLY ASP PHE LYS PRO SEQRES 22 B 293 TYR ARG PRO GLY GLN ALA TYR VAL PRO CYS TYR PHE ILE SEQRES 23 B 293 HIS VAL LEU LYS LYS THR GLY SEQRES 1 C 293 ACE VAL ASP SER VAL TYR ARG THR ARG SER LEU GLY VAL SEQRES 2 C 293 ALA ALA GLU GLY ILE PRO ASP GLN TYR ALA ASP GLY GLU SEQRES 3 C 293 ALA ALA ARG VAL TRP GLN LEU TYR ILE GLY ASP THR ARG SEQRES 4 C 293 SER ARG THR ALA GLU TYR LYS ALA TRP LEU LEU GLY LEU SEQRES 5 C 293 LEU ARG GLN HIS GLY CYS HIS ARG VAL LEU ASP VAL ALA SEQRES 6 C 293 CYS GLY THR GLY VAL ASP SER ILE MET LEU VAL GLU GLU SEQRES 7 C 293 GLY PHE SER VAL THR SER VAL ASP ALA SER ASP LYS MET SEQRES 8 C 293 LEU LYS TYR ALA LEU LYS GLU ARG TRP ASN ARG ARG LYS SEQRES 9 C 293 GLU PRO ALA PHE ASP LYS TRP VAL ILE GLU GLU ALA ASN SEQRES 10 C 293 TRP LEU THR LEU ASP LYS ASP VAL PRO ALA GLY ASP GLY SEQRES 11 C 293 PHE ASP ALA VAL ILE CYS LEU GLY ASN SER PHE ALA HIS SEQRES 12 C 293 LEU PRO ASP SER LYS GLY ASP GLN SER GLU HIS ARG LEU SEQRES 13 C 293 ALA LEU LYS ASN ILE ALA SER MET VAL ARG PRO GLY GLY SEQRES 14 C 293 LEU LEU VAL ILE ASP HIS ARG ASN TYR ASP TYR ILE LEU SEQRES 15 C 293 SER THR GLY CYS ALA PRO PRO GLY LYS ASN ILE TYR TYR SEQRES 16 C 293 LYS SER ASP LEU THR LYS ASP ILE THR THR SER VAL LEU SEQRES 17 C 293 THR VAL ASN ASN LYS ALA HIS MET VAL THR LEU ASP TYR SEQRES 18 C 293 THR VAL GLN VAL PRO GLY ALA GLY ARG ASP GLY ALA PRO SEQRES 19 C 293 GLY PHE SER LYS PHE ARG LEU SER TYR TYR PRO HIS CYS SEQRES 20 C 293 LEU ALA SER PHE THR GLU LEU VAL GLN GLU ALA PHE GLY SEQRES 21 C 293 GLY ARG CYS GLN HIS SER VAL LEU GLY ASP PHE LYS PRO SEQRES 22 C 293 TYR ARG PRO GLY GLN ALA TYR VAL PRO CYS TYR PHE ILE SEQRES 23 C 293 HIS VAL LEU LYS LYS THR GLY SEQRES 1 D 293 ACE VAL ASP SER VAL TYR ARG THR ARG SER LEU GLY VAL SEQRES 2 D 293 ALA ALA GLU GLY ILE PRO ASP GLN TYR ALA ASP GLY GLU SEQRES 3 D 293 ALA ALA ARG VAL TRP GLN LEU TYR ILE GLY ASP THR ARG SEQRES 4 D 293 SER ARG THR ALA GLU TYR LYS ALA TRP LEU LEU GLY LEU SEQRES 5 D 293 LEU ARG GLN HIS GLY CYS HIS ARG VAL LEU ASP VAL ALA SEQRES 6 D 293 CYS GLY THR GLY VAL ASP SER ILE MET LEU VAL GLU GLU SEQRES 7 D 293 GLY PHE SER VAL THR SER VAL ASP ALA SER ASP LYS MET SEQRES 8 D 293 LEU LYS TYR ALA LEU LYS GLU ARG TRP ASN ARG ARG LYS SEQRES 9 D 293 GLU PRO ALA PHE ASP LYS TRP VAL ILE GLU GLU ALA ASN SEQRES 10 D 293 TRP LEU THR LEU ASP LYS ASP VAL PRO ALA GLY ASP GLY SEQRES 11 D 293 PHE ASP ALA VAL ILE CYS LEU GLY ASN SER PHE ALA HIS SEQRES 12 D 293 LEU PRO ASP SER LYS GLY ASP GLN SER GLU HIS ARG LEU SEQRES 13 D 293 ALA LEU LYS ASN ILE ALA SER MET VAL ARG PRO GLY GLY SEQRES 14 D 293 LEU LEU VAL ILE ASP HIS ARG ASN TYR ASP TYR ILE LEU SEQRES 15 D 293 SER THR GLY CYS ALA PRO PRO GLY LYS ASN ILE TYR TYR SEQRES 16 D 293 LYS SER ASP LEU THR LYS ASP ILE THR THR SER VAL LEU SEQRES 17 D 293 THR VAL ASN ASN LYS ALA HIS MET VAL THR LEU ASP TYR SEQRES 18 D 293 THR VAL GLN VAL PRO GLY ALA GLY ARG ASP GLY ALA PRO SEQRES 19 D 293 GLY PHE SER LYS PHE ARG LEU SER TYR TYR PRO HIS CYS SEQRES 20 D 293 LEU ALA SER PHE THR GLU LEU VAL GLN GLU ALA PHE GLY SEQRES 21 D 293 GLY ARG CYS GLN HIS SER VAL LEU GLY ASP PHE LYS PRO SEQRES 22 D 293 TYR ARG PRO GLY GLN ALA TYR VAL PRO CYS TYR PHE ILE SEQRES 23 D 293 HIS VAL LEU LYS LYS THR GLY HET ACE A 300 3 HET ACE B 300 3 HET ACE C 300 3 HET ACE D 300 3 HET C2F A1100 33 HET TAM A1500 11 HET C2F B1700 33 HET C2F C1410 33 HET TAM C1600 11 HET C2F D1200 33 HET TAM D1400 11 HETNAM ACE ACETYL GROUP HETNAM C2F 5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID HETNAM TAM TRIS(HYDROXYETHYL)AMINOMETHANE FORMUL 1 ACE 4(C2 H4 O) FORMUL 5 C2F 4(C20 H25 N7 O6) FORMUL 6 TAM 3(C7 H17 N O3) FORMUL 12 HOH *725(H2 O) HELIX 1 1 GLY A 24 GLY A 35 1 12 HELIX 2 2 THR A 41 HIS A 55 1 15 HELIX 3 3 GLY A 68 GLU A 77 1 10 HELIX 4 4 SER A 87 ARG A 101 1 15 HELIX 5 5 GLU A 104 LYS A 109 1 6 HELIX 6 6 ASN A 116 LEU A 118 5 3 HELIX 7 7 THR A 119 VAL A 124 1 6 HELIX 8 8 SER A 139 LEU A 143 5 5 HELIX 9 9 GLN A 150 MET A 163 1 14 HELIX 10 10 ASN A 176 GLY A 184 1 9 HELIX 11 11 CYS A 246 ALA A 257 1 12 HELIX 12 12 GLY B 24 GLY B 35 1 12 HELIX 13 13 THR B 41 HIS B 55 1 15 HELIX 14 14 GLY B 68 GLU B 77 1 10 HELIX 15 15 SER B 87 ARG B 101 1 15 HELIX 16 16 GLU B 104 LYS B 109 1 6 HELIX 17 17 ASN B 116 LEU B 118 5 3 HELIX 18 18 THR B 119 VAL B 124 1 6 HELIX 19 19 SER B 139 LEU B 143 5 5 HELIX 20 20 GLN B 150 MET B 163 1 14 HELIX 21 21 ASN B 176 GLY B 184 1 9 HELIX 22 22 CYS B 246 ALA B 257 1 12 HELIX 23 23 GLY C 24 ASP C 36 1 13 HELIX 24 24 THR C 41 HIS C 55 1 15 HELIX 25 25 GLY C 68 GLU C 77 1 10 HELIX 26 26 SER C 87 ARG C 101 1 15 HELIX 27 27 GLU C 104 LYS C 109 1 6 HELIX 28 28 ASN C 116 LEU C 118 5 3 HELIX 29 29 THR C 119 VAL C 124 1 6 HELIX 30 30 SER C 139 LEU C 143 5 5 HELIX 31 31 GLN C 150 SER C 162 1 13 HELIX 32 32 ASN C 176 GLY C 184 1 9 HELIX 33 33 CYS C 246 PHE C 258 1 13 HELIX 34 34 GLY D 24 GLY D 35 1 12 HELIX 35 35 THR D 41 HIS D 55 1 15 HELIX 36 36 GLY D 68 GLU D 77 1 10 HELIX 37 37 SER D 87 ARG D 101 1 15 HELIX 38 38 GLU D 104 LYS D 109 1 6 HELIX 39 39 ASN D 116 LEU D 118 5 3 HELIX 40 40 THR D 119 VAL D 124 1 6 HELIX 41 41 SER D 139 LEU D 143 5 5 HELIX 42 42 GLN D 150 MET D 163 1 14 HELIX 43 43 ASN D 176 GLY D 184 1 9 HELIX 44 44 CYS D 246 ALA D 257 1 12 SHEET 1 A 2 VAL A 4 ARG A 6 0 SHEET 2 A 2 VAL C 4 ARG C 6 -1 O TYR C 5 N TYR A 5 SHEET 1 B 8 VAL A 111 GLU A 114 0 SHEET 2 B 8 SER A 80 ASP A 85 1 N SER A 83 O VAL A 111 SHEET 3 B 8 ARG A 59 ASP A 62 1 N ASP A 62 O VAL A 84 SHEET 4 B 8 PHE A 130 CYS A 135 1 O ILE A 134 N LEU A 61 SHEET 5 B 8 VAL A 164 ARG A 175 1 O ARG A 165 N PHE A 130 SHEET 6 B 8 TYR A 283 LYS A 290 -1 O LYS A 290 N GLY A 167 SHEET 7 B 8 CYS A 262 GLY A 268 -1 N GLN A 263 O LYS A 289 SHEET 8 B 8 LYS A 271 PRO A 272 -1 O LYS A 271 N GLY A 268 SHEET 1 C 6 GLY A 234 TYR A 242 0 SHEET 2 C 6 LYS A 212 VAL A 224 -1 N TYR A 220 O PHE A 238 SHEET 3 C 6 ASP A 201 VAL A 209 -1 N LEU A 207 O HIS A 214 SHEET 4 C 6 LYS C 200 VAL C 209 -1 O THR C 208 N VAL A 206 SHEET 5 C 6 LYS C 212 GLN C 223 -1 O THR C 217 N SER C 205 SHEET 6 C 6 PHE C 235 TYR C 242 -1 O PHE C 238 N TYR C 220 SHEET 1 D 2 VAL B 4 ARG B 6 0 SHEET 2 D 2 VAL D 4 ARG D 6 -1 O TYR D 5 N TYR B 5 SHEET 1 E 8 VAL B 111 GLU B 114 0 SHEET 2 E 8 SER B 80 ASP B 85 1 N SER B 83 O VAL B 111 SHEET 3 E 8 ARG B 59 ASP B 62 1 N ASP B 62 O VAL B 84 SHEET 4 E 8 PHE B 130 CYS B 135 1 O ALA B 132 N LEU B 61 SHEET 5 E 8 VAL B 164 ARG B 175 1 O ARG B 165 N PHE B 130 SHEET 6 E 8 TYR B 283 LYS B 290 -1 O PHE B 284 N HIS B 174 SHEET 7 E 8 CYS B 262 GLY B 268 -1 N LEU B 267 O ILE B 285 SHEET 8 E 8 LYS B 271 PRO B 272 -1 O LYS B 271 N GLY B 268 SHEET 1 F 6 GLY B 234 TYR B 242 0 SHEET 2 F 6 LYS B 212 VAL B 224 -1 N LEU B 218 O LEU B 240 SHEET 3 F 6 LYS B 200 VAL B 209 -1 N VAL B 209 O LYS B 212 SHEET 4 F 6 LYS D 200 VAL D 209 -1 O THR D 208 N VAL B 206 SHEET 5 F 6 LYS D 212 GLN D 223 -1 O HIS D 214 N LEU D 207 SHEET 6 F 6 PHE D 235 TYR D 242 -1 O PHE D 238 N TYR D 220 SHEET 1 G 8 VAL C 111 GLU C 114 0 SHEET 2 G 8 SER C 80 ASP C 85 1 N SER C 83 O VAL C 111 SHEET 3 G 8 ARG C 59 ASP C 62 1 N VAL C 60 O SER C 80 SHEET 4 G 8 PHE C 130 CYS C 135 1 O ALA C 132 N LEU C 61 SHEET 5 G 8 VAL C 164 ARG C 175 1 O ARG C 165 N PHE C 130 SHEET 6 G 8 TYR C 283 LYS C 290 -1 O HIS C 286 N ILE C 172 SHEET 7 G 8 CYS C 262 GLY C 268 -1 N LEU C 267 O ILE C 285 SHEET 8 G 8 LYS C 271 PRO C 272 -1 O LYS C 271 N GLY C 268 SHEET 1 H 8 VAL D 111 GLU D 114 0 SHEET 2 H 8 SER D 80 ASP D 85 1 N SER D 83 O VAL D 111 SHEET 3 H 8 ARG D 59 ASP D 62 1 N ASP D 62 O THR D 82 SHEET 4 H 8 PHE D 130 CYS D 135 1 O ALA D 132 N LEU D 61 SHEET 5 H 8 VAL D 164 ARG D 175 1 O ARG D 165 N PHE D 130 SHEET 6 H 8 TYR D 283 LYS D 290 -1 O HIS D 286 N ILE D 172 SHEET 7 H 8 CYS D 262 GLY D 268 -1 N LEU D 267 O ILE D 285 SHEET 8 H 8 LYS D 271 PRO D 272 -1 O LYS D 271 N GLY D 268 LINK N VAL A 1 C ACE A 300 1555 1555 1.35 LINK N VAL B 1 C ACE B 300 1555 1555 1.36 LINK N VAL C 1 C ACE C 300 1555 1555 1.33 LINK N VAL D 1 C ACE D 300 1555 1555 1.36 SITE 1 AC1 16 TYR A 5 THR A 7 HOH A 642 HOH A 653 SITE 2 AC1 16 HOH A 670 HOH A 698 LEU B 207 HIS B 214 SITE 3 AC1 16 THR B 217 ARG B 239 SER C 3 VAL C 4 SITE 4 AC1 16 TYR C 5 LEU D 207 HIS D 214 MET D 215 SITE 1 AC2 12 TRP A 30 TYR A 33 ILE A 34 THR A 37 SITE 2 AC2 12 GLY A 137 SER A 139 HIS A 142 HOH A 416 SITE 3 AC2 12 HOH A 487 HOH A 671 ALA B 13 GLU B 15 SITE 1 AC3 3 TYR B 279 VAL B 280 CYS B 282 SITE 1 AC4 9 ARG C 59 PRO C 125 ALA C 126 HOH C 316 SITE 2 AC4 9 HOH C 405 HOH C 427 HOH C 585 HOH C 635 SITE 3 AC4 9 HOH C 648 SITE 1 AC5 13 TRP C 30 TYR C 33 ILE C 34 THR C 37 SITE 2 AC5 13 MET C 90 GLY C 137 HOH C 337 HOH C 437 SITE 3 AC5 13 HOH C 519 HOH C 639 ALA D 13 GLU D 15 SITE 4 AC5 13 HOH D 387 SITE 1 AC6 16 LEU A 207 HIS A 214 MET A 215 SER B 3 SITE 2 AC6 16 VAL B 4 TYR B 5 LEU C 207 HIS C 214 SITE 3 AC6 16 MET C 215 THR C 217 ARG C 239 HOH C 317 SITE 4 AC6 16 TYR D 5 THR D 7 HOH D 369 HOH D 627 SITE 1 AC7 11 GLU C 15 TYR D 33 ILE D 34 MET D 90 SITE 2 AC7 11 GLY D 137 ASN D 191 HOH D 345 HOH D 382 SITE 3 AC7 11 HOH D 402 HOH D 444 HOH D 522 CRYST1 59.186 83.788 134.436 90.00 91.32 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016896 0.000000 0.000390 0.00000 SCALE2 0.000000 0.011935 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007440 0.00000 HETATM 1 C ACE A 300 25.245 -21.138 24.298 1.00 26.02 C HETATM 2 O ACE A 300 23.988 -21.154 24.257 1.00 28.48 O HETATM 3 CH3 ACE A 300 26.030 -19.970 23.696 1.00 25.97 C