PDB Short entry for 3THV HEADER TRANSFERASE/DNA 19-AUG-11 3THV TITLE CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND TO TITLE 2 DNA AND DDATP-DT IN CLOSED CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE I; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: BACILLUS FRAGMENT (UNP RESIDUES 285-876); COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(2DA))-3'; COMPND 10 CHAIN: B, E; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: PRIMER STRAND; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: 5'-D(*C*AP*TP*TP*TP*GP*AP*GP*TP*CP*AP*GP*G)-3'; COMPND 15 CHAIN: C, F; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: TEMPLATE STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS; SOURCE 3 ORGANISM_TAXID: 129337; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET30A; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES KEYWDS DNA POLYMERASE I, PROTEIN-DNA COMPLEX, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.WANG,L.S.BEESE REVDAT 4 13-SEP-23 3THV 1 REMARK SEQADV LINK REVDAT 3 02-APR-14 3THV 1 SOURCE REVDAT 2 16-NOV-11 3THV 1 JRNL REVDAT 1 19-OCT-11 3THV 0 JRNL AUTH W.WANG,H.W.HELLINGA,L.S.BEESE JRNL TITL STRUCTURAL EVIDENCE FOR THE RARE TAUTOMER HYPOTHESIS OF JRNL TITL 2 SPONTANEOUS MUTAGENESIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 17644 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 22006298 JRNL DOI 10.1073/PNAS.1114496108 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.J.JOHNSON,L.S.BEESE REMARK 1 TITL STRUCTURES OF MISMATCH REPLICATION ERRORS OBSERVED IN A DNA REMARK 1 TITL 2 POLYMERASE. REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 116 803 2004 REMARK 1 REFN ISSN 0092-8674 REMARK 1 PMID 15035983 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 88.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 185284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.550 REMARK 3 FREE R VALUE TEST SET COUNT : 8426 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 88.5413 - 5.0059 0.98 6602 343 0.2001 0.2184 REMARK 3 2 5.0059 - 3.9733 1.00 6473 337 0.1567 0.1894 REMARK 3 3 3.9733 - 3.4710 0.98 6267 320 0.1659 0.1869 REMARK 3 4 3.4710 - 3.1537 1.00 6372 326 0.1710 0.1893 REMARK 3 5 3.1537 - 2.9276 1.00 6349 318 0.1835 0.2074 REMARK 3 6 2.9276 - 2.7550 1.00 6369 295 0.1839 0.2189 REMARK 3 7 2.7550 - 2.6170 0.99 6338 275 0.1778 0.2052 REMARK 3 8 2.6170 - 2.5031 1.00 6370 264 0.1755 0.2104 REMARK 3 9 2.5031 - 2.4067 0.99 6313 252 0.1766 0.2227 REMARK 3 10 2.4067 - 2.3237 0.99 6363 260 0.1744 0.2125 REMARK 3 11 2.3237 - 2.2510 0.86 5537 192 0.2326 0.2706 REMARK 3 12 2.2510 - 2.1866 0.85 5289 275 0.2512 0.2902 REMARK 3 13 2.1866 - 2.1291 0.99 6321 237 0.1792 0.2067 REMARK 3 14 2.1291 - 2.0771 0.99 6328 257 0.1834 0.2277 REMARK 3 15 2.0771 - 2.0299 0.98 6227 218 0.1850 0.2093 REMARK 3 16 2.0299 - 1.9867 0.98 6258 218 0.1874 0.2166 REMARK 3 17 1.9867 - 1.9470 0.96 6015 299 0.2049 0.2458 REMARK 3 18 1.9470 - 1.9102 0.79 4957 260 0.3579 0.3932 REMARK 3 19 1.9102 - 1.8761 0.76 4722 249 0.2731 0.3335 REMARK 3 20 1.8761 - 1.8443 0.95 5962 314 0.2094 0.2541 REMARK 3 21 1.8443 - 1.8145 0.95 5958 313 0.2111 0.2602 REMARK 3 22 1.8145 - 1.7866 0.95 5978 315 0.2118 0.2541 REMARK 3 23 1.7866 - 1.7603 0.94 5855 308 0.2240 0.2489 REMARK 3 24 1.7603 - 1.7355 0.93 5805 305 0.2214 0.2463 REMARK 3 25 1.7355 - 1.7121 0.93 5873 310 0.2174 0.2560 REMARK 3 26 1.7121 - 1.6899 0.92 5754 303 0.2204 0.2709 REMARK 3 27 1.6899 - 1.6687 0.91 5674 298 0.2320 0.2829 REMARK 3 28 1.6687 - 1.6486 0.90 5609 295 0.2447 0.2563 REMARK 3 29 1.6486 - 1.6294 0.89 5570 294 0.2445 0.2804 REMARK 3 30 1.6294 - 1.6111 0.54 3350 176 0.2645 0.2877 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.77 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 43.84 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37380 REMARK 3 B22 (A**2) : -1.27690 REMARK 3 B33 (A**2) : 0.90310 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 10540 REMARK 3 ANGLE : 1.266 14445 REMARK 3 CHIRALITY : 0.073 1611 REMARK 3 PLANARITY : 0.006 1723 REMARK 3 DIHEDRAL : 15.511 4082 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3THV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067496. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97121 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 193977 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 2HVI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45-50% SATURATED AMMONIUM SULFATE, REMARK 280 2.5% MPD, 10 MM MAGNESIUM SULFATE, 100 MM MES, PH 5.8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 46.90500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.21500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.63500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.21500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.90500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.63500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 285 REMARK 465 GLU A 286 REMARK 465 SER A 287 REMARK 465 PRO A 288 REMARK 465 SER A 289 REMARK 465 SER A 290 REMARK 465 GLU A 291 REMARK 465 GLU A 292 REMARK 465 GLU A 293 REMARK 465 LYS A 294 REMARK 465 PRO A 295 REMARK 465 LEU A 296 REMARK 465 ALA A 297 REMARK 465 MET D 285 REMARK 465 GLU D 286 REMARK 465 SER D 287 REMARK 465 PRO D 288 REMARK 465 SER D 289 REMARK 465 SER D 290 REMARK 465 GLU D 291 REMARK 465 GLU D 292 REMARK 465 GLU D 293 REMARK 465 LYS D 294 REMARK 465 PRO D 295 REMARK 465 LEU D 296 REMARK 465 ALA D 297 REMARK 465 DC C 0 REMARK 465 DC F 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA C 1 P OP1 OP2 REMARK 470 DA F 1 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS D 664 H ARG D 859 1.28 REMARK 500 HH22 ARG A 819 O HOH A 990 1.45 REMARK 500 OE1 GLU A 325 HH12 ARG A 435 1.47 REMARK 500 HE ARG D 596 O HOH D 1312 1.48 REMARK 500 HZ2 LYS D 315 O HOH D 978 1.48 REMARK 500 HE ARG A 596 O HOH A 169 1.58 REMARK 500 HZ1 LYS D 593 O HOH D 1115 1.60 REMARK 500 O HOH D 1556 O HOH D 1639 2.18 REMARK 500 OD2 ASP D 653 O HOH D 1695 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1190 O HOH D 947 4445 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC C 9 O3' DC C 9 C3' -0.042 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT B 23 O4' - C1' - N1 ANGL. DEV. = -6.3 DEGREES REMARK 500 DG B 24 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DG B 24 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC B 26 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 DT B 27 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 DT B 27 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT C 2 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT C 8 O4' - C1' - N1 ANGL. DEV. = -7.7 DEGREES REMARK 500 DG C 12 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DC E 21 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT E 23 O4' - C1' - N1 ANGL. DEV. = -6.3 DEGREES REMARK 500 DT E 27 O4' - C4' - C3' ANGL. DEV. = -3.1 DEGREES REMARK 500 DT F 2 O4' - C1' - C2' ANGL. DEV. = -4.8 DEGREES REMARK 500 DT F 2 O4' - C1' - N1 ANGL. DEV. = 5.7 DEGREES REMARK 500 DT F 8 O4' - C1' - N1 ANGL. DEV. = -4.4 DEGREES REMARK 500 DG F 12 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 372 66.36 61.37 REMARK 500 ASP A 402 96.96 -168.67 REMARK 500 ASP A 408 11.29 -141.73 REMARK 500 GLN A 418 47.22 38.16 REMARK 500 ALA A 421 41.47 -86.58 REMARK 500 ILE A 588 -68.84 -108.91 REMARK 500 LEU A 610 -50.35 -124.15 REMARK 500 ILE A 628 -23.18 -146.72 REMARK 500 GLN A 656 51.03 37.54 REMARK 500 GLU A 694 32.72 -68.99 REMARK 500 ASP A 695 -7.37 -145.03 REMARK 500 HIS A 768 17.60 81.24 REMARK 500 ARG A 819 54.76 38.71 REMARK 500 HIS A 829 -53.26 80.04 REMARK 500 ASP A 830 25.43 -141.57 REMARK 500 ASP D 372 61.35 63.35 REMARK 500 ASP D 402 90.83 -166.70 REMARK 500 ALA D 421 45.23 -87.57 REMARK 500 ILE D 588 -72.79 -109.45 REMARK 500 LEU D 610 -55.35 -123.59 REMARK 500 ILE D 628 -24.03 -150.92 REMARK 500 HIS D 768 16.99 82.68 REMARK 500 HIS D 829 -52.06 72.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DDS A 201 O2B REMARK 620 2 DDS A 201 O2G 90.1 REMARK 620 3 DDS A 201 O2A 85.6 96.1 REMARK 620 4 ASP A 653 OD1 164.2 96.4 107.8 REMARK 620 5 TYR A 654 O 92.0 88.5 174.9 73.9 REMARK 620 6 ASP A 830 OD2 98.1 171.2 87.6 74.9 88.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 2 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DDS D 202 O2B REMARK 620 2 DDS D 202 O2A 84.6 REMARK 620 3 DDS D 202 O2G 84.3 92.6 REMARK 620 4 TYR D 654 O 93.3 175.7 90.9 REMARK 620 5 ASP D 830 OD2 99.5 85.3 175.4 91.4 REMARK 620 6 HOH D1696 O 167.5 94.8 83.3 88.0 92.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DDS A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DDS D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TAN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND REMARK 900 TO DUPLEX DNA WITH CYTOSINE-ADENINE MISMATCH AT (N-1) POSITION REMARK 900 RELATED ID: 3TAP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND REMARK 900 TO DUPLEX DNA WITH CYTOSINE-ADENINE MISMATCH AT (N-3) POSITION REMARK 900 RELATED ID: 3TAQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND REMARK 900 TO DUPLEX DNA WITH CYTOSINE-ADENINE MISMATCH AT (N-4) POSITION REMARK 900 RELATED ID: 3TAR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND REMARK 900 TO DUPLEX DNA WITH CYTOSINE-ADENINE MISMATCH AT (N-6) POSITION REMARK 900 RELATED ID: 3TI0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND REMARK 900 TO DNA AND DDGTP-DC IN CLOSED CONFORMATION REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT THE GEOBACILLUS SP. STRAIN IS UNKNOWN BUT REMARK 999 SIMILAR TO Y412MC61. DBREF 3THV A 285 876 UNP C9RTX7 C9RTX7_GEOSY 285 876 DBREF 3THV D 285 876 UNP C9RTX7 C9RTX7_GEOSY 285 876 DBREF 3THV B 21 29 PDB 3THV 3THV 21 29 DBREF 3THV E 21 29 PDB 3THV 3THV 21 29 DBREF 3THV C 0 12 PDB 3THV 3THV 0 12 DBREF 3THV F 0 12 PDB 3THV 3THV 0 12 SEQADV 3THV GLU A 456 UNP C9RTX7 ALA 456 SEE REMARK 999 SEQADV 3THV LYS A 505 UNP C9RTX7 GLU 505 SEE REMARK 999 SEQADV 3THV ALA A 598 UNP C9RTX7 ASP 598 ENGINEERED MUTATION SEQADV 3THV TYR A 710 UNP C9RTX7 PHE 710 ENGINEERED MUTATION SEQADV 3THV HIS A 823 UNP C9RTX7 ARG 823 SEE REMARK 999 SEQADV 3THV GLU D 456 UNP C9RTX7 ALA 456 SEE REMARK 999 SEQADV 3THV LYS D 505 UNP C9RTX7 GLU 505 SEE REMARK 999 SEQADV 3THV ALA D 598 UNP C9RTX7 ASP 598 ENGINEERED MUTATION SEQADV 3THV TYR D 710 UNP C9RTX7 PHE 710 ENGINEERED MUTATION SEQADV 3THV HIS D 823 UNP C9RTX7 ARG 823 SEE REMARK 999 SEQRES 1 A 592 MET GLU SER PRO SER SER GLU GLU GLU LYS PRO LEU ALA SEQRES 2 A 592 LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU GLU SEQRES 3 A 592 MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL VAL SEQRES 4 A 592 GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE ALA SEQRES 5 A 592 VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO GLU SEQRES 6 A 592 THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU GLY SEQRES 7 A 592 ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS ARG SEQRES 8 A 592 ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU CYS SEQRES 9 A 592 GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU LEU SEQRES 10 A 592 ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA ALA SEQRES 11 A 592 LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU ALA SEQRES 12 A 592 VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP GLU SEQRES 13 A 592 PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA ALA SEQRES 14 A 592 ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU LEU ARG SEQRES 15 A 592 ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU GLN SEQRES 16 A 592 PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA GLY SEQRES 17 A 592 VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY LYS SEQRES 18 A 592 GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN ARG ILE SEQRES 19 A 592 TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER PRO SEQRES 20 A 592 LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN LEU SEQRES 21 A 592 PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SER SEQRES 22 A 592 ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU ILE SEQRES 23 A 592 VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS LEU SEQRES 24 A 592 GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL ARG SEQRES 25 A 592 PRO ALA THR LYS LYS VAL HIS THR ILE PHE ASN GLN ALA SEQRES 26 A 592 LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO ASN SEQRES 27 A 592 LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG LYS SEQRES 28 A 592 ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP LEU SEQRES 29 A 592 ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG VAL SEQRES 30 A 592 LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU ALA SEQRES 31 A 592 PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA MET SEQRES 32 A 592 ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO ASN SEQRES 33 A 592 MET ARG ARG GLN ALA LYS ALA VAL ASN TYR GLY ILE VAL SEQRES 34 A 592 TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU ASN SEQRES 35 A 592 ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG TYR SEQRES 36 A 592 PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU ASN SEQRES 37 A 592 ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR THR SEQRES 38 A 592 LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SER SEQRES 39 A 592 ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET ALA SEQRES 40 A 592 MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE ILE SEQRES 41 A 592 LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS GLU SEQRES 42 A 592 GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL HIS ASP SEQRES 43 A 592 GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU ARG SEQRES 44 A 592 LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA VAL SEQRES 45 A 592 THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR GLY SEQRES 46 A 592 SER THR TRP TYR ASP ALA LYS SEQRES 1 D 592 MET GLU SER PRO SER SER GLU GLU GLU LYS PRO LEU ALA SEQRES 2 D 592 LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU GLU SEQRES 3 D 592 MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL VAL SEQRES 4 D 592 GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE ALA SEQRES 5 D 592 VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO GLU SEQRES 6 D 592 THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU GLY SEQRES 7 D 592 ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS ARG SEQRES 8 D 592 ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU CYS SEQRES 9 D 592 GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU LEU SEQRES 10 D 592 ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA ALA SEQRES 11 D 592 LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU ALA SEQRES 12 D 592 VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP GLU SEQRES 13 D 592 PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA ALA SEQRES 14 D 592 ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU LEU ARG SEQRES 15 D 592 ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU GLN SEQRES 16 D 592 PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA GLY SEQRES 17 D 592 VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY LYS SEQRES 18 D 592 GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN ARG ILE SEQRES 19 D 592 TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER PRO SEQRES 20 D 592 LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN LEU SEQRES 21 D 592 PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SER SEQRES 22 D 592 ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU ILE SEQRES 23 D 592 VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS LEU SEQRES 24 D 592 GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL ARG SEQRES 25 D 592 PRO ALA THR LYS LYS VAL HIS THR ILE PHE ASN GLN ALA SEQRES 26 D 592 LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO ASN SEQRES 27 D 592 LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG LYS SEQRES 28 D 592 ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP LEU SEQRES 29 D 592 ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG VAL SEQRES 30 D 592 LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU ALA SEQRES 31 D 592 PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA MET SEQRES 32 D 592 ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO ASN SEQRES 33 D 592 MET ARG ARG GLN ALA LYS ALA VAL ASN TYR GLY ILE VAL SEQRES 34 D 592 TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU ASN SEQRES 35 D 592 ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG TYR SEQRES 36 D 592 PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU ASN SEQRES 37 D 592 ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR THR SEQRES 38 D 592 LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SER SEQRES 39 D 592 ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET ALA SEQRES 40 D 592 MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE ILE SEQRES 41 D 592 LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS GLU SEQRES 42 D 592 GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL HIS ASP SEQRES 43 D 592 GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU ARG SEQRES 44 D 592 LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA VAL SEQRES 45 D 592 THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR GLY SEQRES 46 D 592 SER THR TRP TYR ASP ALA LYS SEQRES 1 B 9 DC DC DT DG DA DC DT DC 2DA SEQRES 1 C 13 DC DA DT DT DT DG DA DG DT DC DA DG DG SEQRES 1 E 9 DC DC DT DG DA DC DT DC 2DA SEQRES 1 F 13 DC DA DT DT DT DG DA DG DT DC DA DG DG MODRES 3THV 2DA B 29 DA 2',3'-DIDEOXYADENOSINE-5'-MONOPHOSPHATE MODRES 3THV 2DA E 29 DA 2',3'-DIDEOXYADENOSINE-5'-MONOPHOSPHATE HET 2DA B 29 30 HET 2DA E 29 30 HET DDS A 201 41 HET MG A 1 1 HET SO4 A 2 5 HET DDS D 202 41 HET MG D 2 1 HET SO4 D 1 5 HET SO4 D 3 5 HETNAM 2DA 2',3'-DIDEOXYADENOSINE-5'-MONOPHOSPHATE HETNAM DDS 2',3'-DIDEOXYADENOSINE TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 3 2DA 2(C10 H14 N5 O5 P) FORMUL 7 DDS 2(C10 H16 N5 O11 P3) FORMUL 8 MG 2(MG 2+) FORMUL 9 SO4 3(O4 S 2-) FORMUL 14 HOH *1696(H2 O) HELIX 1 1 THR A 308 ALA A 313 5 6 HELIX 2 2 ARG A 347 LEU A 352 1 6 HELIX 3 3 ASP A 354 GLY A 362 1 9 HELIX 4 4 ASP A 372 LYS A 383 1 12 HELIX 5 5 LEU A 394 ASP A 402 1 9 HELIX 6 6 PRO A 403 GLY A 406 5 4 HELIX 7 7 ASP A 409 LYS A 415 1 7 HELIX 8 8 MET A 416 GLN A 418 5 3 HELIX 9 9 PRO A 424 GLY A 430 1 7 HELIX 10 10 LYS A 431 ARG A 435 5 5 HELIX 11 11 ASP A 439 ASN A 468 1 30 HELIX 12 12 GLN A 470 LEU A 477 1 8 HELIX 13 13 LEU A 477 GLY A 492 1 16 HELIX 14 14 ASP A 496 GLY A 523 1 28 HELIX 15 15 SER A 530 GLU A 540 1 11 HELIX 16 16 SER A 557 LEU A 564 1 8 HELIX 17 17 GLU A 569 TYR A 587 1 19 HELIX 18 18 ILE A 588 VAL A 595 1 8 HELIX 19 19 LEU A 630 LYS A 635 1 6 HELIX 20 20 ILE A 636 GLN A 638 5 3 HELIX 21 21 GLN A 656 GLU A 667 1 12 HELIX 22 22 ASP A 668 ARG A 677 1 10 HELIX 23 23 ASP A 680 GLN A 691 1 12 HELIX 24 24 THR A 698 TYR A 714 1 17 HELIX 25 25 SER A 717 ASN A 726 1 10 HELIX 26 26 SER A 728 PHE A 743 1 16 HELIX 27 27 PHE A 743 GLY A 761 1 19 HELIX 28 28 PRO A 774 SER A 778 5 5 HELIX 29 29 ASN A 780 GLU A 818 1 39 HELIX 30 30 GLU A 840 ALA A 855 1 16 HELIX 31 31 THR D 308 LEU D 312 5 5 HELIX 32 32 ARG D 347 LEU D 352 1 6 HELIX 33 33 ASP D 354 GLY D 362 1 9 HELIX 34 34 ASP D 372 LYS D 383 1 12 HELIX 35 35 LEU D 394 ASP D 402 1 9 HELIX 36 36 PRO D 403 GLY D 406 5 4 HELIX 37 37 ASP D 409 MET D 416 1 8 HELIX 38 38 PRO D 424 GLY D 430 1 7 HELIX 39 39 LYS D 431 ARG D 435 5 5 HELIX 40 40 ASP D 439 ASN D 468 1 30 HELIX 41 41 GLN D 470 LEU D 477 1 8 HELIX 42 42 LEU D 477 GLY D 492 1 16 HELIX 43 43 ASP D 496 GLY D 523 1 28 HELIX 44 44 SER D 530 GLU D 540 1 11 HELIX 45 45 SER D 557 LEU D 564 1 8 HELIX 46 46 GLU D 569 TYR D 587 1 19 HELIX 47 47 ILE D 588 VAL D 595 1 8 HELIX 48 48 LEU D 630 LYS D 635 1 6 HELIX 49 49 ILE D 636 GLN D 638 5 3 HELIX 50 50 GLN D 656 GLU D 667 1 12 HELIX 51 51 ASP D 668 ARG D 677 1 10 HELIX 52 52 ASP D 680 GLN D 691 1 12 HELIX 53 53 SER D 693 VAL D 697 5 5 HELIX 54 54 THR D 698 TYR D 714 1 17 HELIX 55 55 SER D 717 ASN D 726 1 10 HELIX 56 56 SER D 728 PHE D 743 1 16 HELIX 57 57 PHE D 743 GLY D 761 1 19 HELIX 58 58 PRO D 774 SER D 778 5 5 HELIX 59 59 ASN D 780 GLU D 818 1 39 HELIX 60 60 GLU D 840 ALA D 855 1 16 SHEET 1 A 6 THR A 302 LEU A 303 0 SHEET 2 A 6 GLY A 342 LEU A 346 1 O ARG A 343 N THR A 302 SHEET 3 A 6 GLY A 334 ASN A 339 -1 N VAL A 337 O PHE A 344 SHEET 4 A 6 LYS A 315 GLU A 321 -1 N ALA A 317 O VAL A 338 SHEET 5 A 6 LYS A 367 MET A 370 1 O SER A 369 N ALA A 316 SHEET 6 A 6 VAL A 390 ASP A 393 1 O PHE A 392 N MET A 370 SHEET 1 B 3 LYS A 601 VAL A 602 0 SHEET 2 B 3 VAL A 493 VAL A 495 -1 N VAL A 493 O VAL A 602 SHEET 3 B 3 PHE A 640 VAL A 641 -1 O VAL A 641 N LYS A 494 SHEET 1 C 2 LYS A 549 THR A 550 0 SHEET 2 C 2 GLY A 553 TYR A 554 -1 O GLY A 553 N THR A 550 SHEET 1 D 2 ILE A 605 ASN A 607 0 SHEET 2 D 2 SER A 617 THR A 619 -1 O THR A 619 N ILE A 605 SHEET 1 E 4 HIS A 823 GLN A 827 0 SHEET 2 E 4 GLU A 831 PRO A 837 -1 O ILE A 833 N LEU A 825 SHEET 3 E 4 TRP A 647 TYR A 654 -1 N PHE A 650 O LEU A 834 SHEET 4 E 4 VAL A 864 GLY A 869 -1 O ASP A 865 N ASP A 653 SHEET 1 F 2 TYR A 762 THR A 764 0 SHEET 2 F 2 ARG A 770 TYR A 772 -1 O ARG A 771 N VAL A 763 SHEET 1 G 6 THR D 302 ALA D 304 0 SHEET 2 G 6 GLY D 342 LEU D 346 1 O PHE D 345 N THR D 302 SHEET 3 G 6 GLY D 334 ASN D 339 -1 N ILE D 335 O LEU D 346 SHEET 4 G 6 LYS D 315 GLU D 321 -1 N ALA D 317 O VAL D 338 SHEET 5 G 6 LYS D 367 MET D 370 1 O SER D 369 N LEU D 318 SHEET 6 G 6 VAL D 390 ASP D 393 1 O PHE D 392 N MET D 370 SHEET 1 H 3 LYS D 601 VAL D 602 0 SHEET 2 H 3 VAL D 493 VAL D 495 -1 N VAL D 493 O VAL D 602 SHEET 3 H 3 PHE D 640 VAL D 641 -1 O VAL D 641 N LYS D 494 SHEET 1 I 2 LYS D 549 THR D 550 0 SHEET 2 I 2 GLY D 553 TYR D 554 -1 O GLY D 553 N THR D 550 SHEET 1 J 2 ILE D 605 ASN D 607 0 SHEET 2 J 2 SER D 617 THR D 619 -1 O THR D 619 N ILE D 605 SHEET 1 K 4 HIS D 823 GLN D 827 0 SHEET 2 K 4 GLU D 831 PRO D 837 -1 O ILE D 833 N LEU D 825 SHEET 3 K 4 TRP D 647 TYR D 654 -1 N PHE D 650 O LEU D 834 SHEET 4 K 4 VAL D 864 GLY D 869 -1 O HIS D 867 N ALA D 651 SHEET 1 L 2 TYR D 762 THR D 764 0 SHEET 2 L 2 ARG D 770 TYR D 772 -1 O ARG D 771 N VAL D 763 LINK O3' DC B 28 P 2DA B 29 1555 1555 1.62 LINK O3' DC E 28 P 2DA E 29 1555 1555 1.60 LINK MG MG A 1 O2B DDS A 201 1555 1555 2.13 LINK MG MG A 1 O2G DDS A 201 1555 1555 2.13 LINK MG MG A 1 O2A DDS A 201 1555 1555 2.19 LINK MG MG A 1 OD1 ASP A 653 1555 1555 2.41 LINK MG MG A 1 O TYR A 654 1555 1555 2.27 LINK MG MG A 1 OD2 ASP A 830 1555 1555 2.28 LINK MG MG D 2 O2B DDS D 202 1555 1555 2.18 LINK MG MG D 2 O2A DDS D 202 1555 1555 2.19 LINK MG MG D 2 O2G DDS D 202 1555 1555 2.26 LINK MG MG D 2 O TYR D 654 1555 1555 2.23 LINK MG MG D 2 OD2 ASP D 830 1555 1555 2.04 LINK MG MG D 2 O HOH D1696 1555 1555 2.28 CISPEP 1 GLU A 620 PRO A 621 0 0.80 CISPEP 2 GLU D 620 PRO D 621 0 1.79 SITE 1 AC1 23 MG A 1 ARG A 615 ASP A 653 TYR A 654 SITE 2 AC1 23 SER A 655 GLN A 656 ILE A 657 GLU A 658 SITE 3 AC1 23 HIS A 682 ARG A 702 LYS A 706 ALA A 707 SITE 4 AC1 23 TYR A 710 ASP A 830 HOH A 881 HOH A 899 SITE 5 AC1 23 HOH A1014 HOH A1040 HOH A1194 HOH A1280 SITE 6 AC1 23 2DA B 29 DT C 3 DT C 4 SITE 1 AC2 4 DDS A 201 ASP A 653 TYR A 654 ASP A 830 SITE 1 AC3 5 ARG A 517 ASN A 573 HOH A1392 HOH A1583 SITE 2 AC3 5 LYS D 730 SITE 1 AC4 23 MG D 2 HOH D 148 HOH D 262 ARG D 615 SITE 2 AC4 23 TYR D 654 SER D 655 GLN D 656 ILE D 657 SITE 3 AC4 23 GLU D 658 HIS D 682 ARG D 702 LYS D 706 SITE 4 AC4 23 TYR D 710 ASP D 830 HOH D 948 HOH D 972 SITE 5 AC4 23 HOH D1055 HOH D1149 HOH D1695 HOH D1696 SITE 6 AC4 23 2DA E 29 DT F 3 DT F 4 SITE 1 AC5 4 DDS D 202 TYR D 654 ASP D 830 HOH D1696 SITE 1 AC6 4 MET D 299 ALA D 300 ARG D 343 ARG D 677 SITE 1 AC7 2 HOH D 151 THR D 857 CRYST1 93.810 109.270 150.430 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010660 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009152 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006648 0.00000