PDB Short entry for 3TJ6 HEADER PROTEIN BINDING/TOXIN 23-AUG-11 3TJ6 TITLE HUMAN VINCULIN HEAD DOMAIN (VH1, RESIDUES 1-258) IN COMPLEX WITH THE TITLE 2 VINCULIN BINDING SITE OF THE SURFACE CELL ANTIGEN 4 (SCA4-VBS-C; TITLE 3 RESIDUES 812-835) FROM RICKETTSIA RICKETTSII COMPND MOL_ID: 1; COMPND 2 MOLECULE: VINCULIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: METAVINCULIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ANTIGENIC HEAT-STABLE 120 KDA PROTEIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 812-834; COMPND 10 SYNONYM: 120 KDA ANTIGEN, PROTEIN PS 120, PS120; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VCL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: RICKETTSIA RICKETTSII; SOURCE 10 ORGANISM_TAXID: 452659; SOURCE 11 STRAIN: IOWA; SOURCE 12 GENE: RRIOWA_0797; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYTOSKELETON, EPIDEMIC TYPHUS, SCA4, SPOTTED FEVER, ALPHA-HELIX KEYWDS 2 BUNDLE DOMAIN, PROTEIN-PROTEIN INTERACTIONS, CELL ADHESION, CYTOSOL, KEYWDS 3 FOCAL ADHESION, PROTEIN BINDING-TOXIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.PARK,J.H.LEE,E.GOUIN,P.COSSART,T.IZARD REVDAT 5 13-SEP-23 3TJ6 1 REMARK REVDAT 4 08-NOV-17 3TJ6 1 REMARK REVDAT 3 01-MAY-13 3TJ6 1 DBREF REVDAT 2 02-NOV-11 3TJ6 1 JRNL REVDAT 1 07-SEP-11 3TJ6 0 JRNL AUTH H.PARK,J.H.LEE,E.GOUIN,P.COSSART,T.IZARD JRNL TITL THE RICKETTSIA SURFACE CELL ANTIGEN 4 APPLIES MIMICRY TO JRNL TITL 2 BIND TO AND ACTIVATE VINCULIN. JRNL REF J.BIOL.CHEM. V. 286 35096 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21841197 JRNL DOI 10.1074/JBC.M111.263855 REMARK 2 REMARK 2 RESOLUTION. 2.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 12251 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.070 REMARK 3 FREE R VALUE TEST SET COUNT : 989 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2873 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2536 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2630 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE : 0.2824 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.46 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 243 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2150 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 141 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.389 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2175 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2946 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.09 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.43 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1 - A|253 } REMARK 3 ORIGIN FOR THE GROUP (A): -29.7500 -3.6017 -22.1830 REMARK 3 T TENSOR REMARK 3 T11: -0.2827 T22: -0.1984 REMARK 3 T33: -0.3378 T12: 0.0017 REMARK 3 T13: -0.0145 T23: 0.0948 REMARK 3 L TENSOR REMARK 3 L11: 3.0590 L22: 1.0234 REMARK 3 L33: 1.6529 L12: 0.1508 REMARK 3 L13: -0.8254 L23: -0.1465 REMARK 3 S TENSOR REMARK 3 S11: 0.0508 S12: 0.5797 S13: 0.0834 REMARK 3 S21: -0.0692 S22: 0.0527 S23: 0.2161 REMARK 3 S31: 0.0291 S32: -0.3881 S33: -0.1035 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|812 - B|834 } REMARK 3 ORIGIN FOR THE GROUP (A): -50.5951 -3.0693 -28.2960 REMARK 3 T TENSOR REMARK 3 T11: -0.0942 T22: 0.2437 REMARK 3 T33: -0.2343 T12: 0.0587 REMARK 3 T13: -0.1120 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 0.3680 L22: 3.2279 REMARK 3 L33: 4.5645 L12: 8.0019 REMARK 3 L13: 6.6296 L23: 0.4646 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: 0.1876 S13: 0.0101 REMARK 3 S21: -0.4440 S22: -0.1142 S23: 0.0554 REMARK 3 S31: -0.5203 S32: -0.5420 S33: 0.1219 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TJ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067542. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97867 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE-ROOT I REMARK 200 -BEAM SINGLE CRYSTAL; ASYMMETRIC REMARK 200 CUT 4.965 DEGREES REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12290 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.760 REMARK 200 RESOLUTION RANGE LOW (A) : 99.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.80 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 36.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.00 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : 0.49000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1RKC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% (V/V) TACSIMATE (PH 5), 100 MM REMARK 280 SODIUM CITRATE TRIBASIC DIHYDRATE (PH 5.6), 16% (W/V) REMARK 280 POLYETHYLENE GLYCOL (3,350), 20 MM TRIS-HCL (PH 9), 150 MM NACL , REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 70.68650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.68650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 70.68650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.68650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 70.68650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 70.68650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 70.68650 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 70.68650 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 70.68650 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 70.68650 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 70.68650 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 70.68650 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 70.68650 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 70.68650 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 70.68650 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 70.68650 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 70.68650 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 70.68650 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 70.68650 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 70.68650 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 70.68650 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 70.68650 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 70.68650 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 70.68650 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 70.68650 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 70.68650 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 70.68650 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 70.68650 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 70.68650 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 70.68650 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 70.68650 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 70.68650 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 70.68650 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 70.68650 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 70.68650 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 70.68650 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 30 REMARK 465 GLU A 31 REMARK 465 VAL A 32 REMARK 465 ASP A 33 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 ILE A 37 CG1 CG2 CD1 REMARK 470 LYS A 228 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 35 -99.17 -145.27 REMARK 500 ALA A 36 87.03 56.03 REMARK 500 ASP A 39 -79.46 47.85 REMARK 500 ASN A 220 -152.18 57.73 REMARK 500 GLN A 221 134.19 -37.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RF3 RELATED DB: PDB REMARK 900 SHIGELLA IPAA-VBS3 IN COMPLEX WITH HUMAN VINCULIN REMARK 900 RELATED ID: 2IBF RELATED DB: PDB REMARK 900 HUMAN VINCULIN'S HEAD DOMAIN (VH1, RESIDUES 1-258) IN COMPLEX WITH REMARK 900 TWO VINCULIN BINDING SITES OF SHIGELLA FLEXNERI'S IPAA (RESIDUES REMARK 900 565-587) REMARK 900 RELATED ID: 2HSQ RELATED DB: PDB REMARK 900 HUMAN VINCULIN (HEAD DOMAIN, VH1, RESIDUES 1-258) IN COMPLEX WITH REMARK 900 SHIGELLA'S IPAA VINCULIN BINDING SITE 2 (RESIDUES 565-587) REMARK 900 RELATED ID: 2GWW RELATED DB: PDB REMARK 900 HUMAN VINCULIN (HEAD DOMAIN, VH1, RESIDUES 1-258) IN COMPLEX WITH REMARK 900 SHIGELLA'S IPAA VINCULIN BINDING SITE (RESIDUES 602-633) REMARK 900 RELATED ID: 1RKC RELATED DB: PDB REMARK 900 HUMAN VINCULIN HEAD (1-258) IN COMPLEX WITH TALIN'S VINCULIN REMARK 900 BINDING SITE 3 (RESIDUES 1944-1969) REMARK 900 RELATED ID: 3S90 RELATED DB: PDB REMARK 900 HUMAN VINCULIN HEAD DOMAIN VH1 (RESIDUES 1-252) IN COMPLEX WITH REMARK 900 MURINE TALIN (VBS33; RESIDUES 1512-1546) REMARK 900 RELATED ID: 3TJ5 RELATED DB: PDB DBREF 3TJ6 A 1 257 UNP P18206 VINC_HUMAN 1 257 DBREF 3TJ6 B 812 834 UNP B0BXR4 B0BXR4_RICRO 812 834 SEQRES 1 A 257 MET PRO VAL PHE HIS THR ARG THR ILE GLU SER ILE LEU SEQRES 2 A 257 GLU PRO VAL ALA GLN GLN ILE SER HIS LEU VAL ILE MET SEQRES 3 A 257 HIS GLU GLU GLY GLU VAL ASP GLY LYS ALA ILE PRO ASP SEQRES 4 A 257 LEU THR ALA PRO VAL ALA ALA VAL GLN ALA ALA VAL SER SEQRES 5 A 257 ASN LEU VAL ARG VAL GLY LYS GLU THR VAL GLN THR THR SEQRES 6 A 257 GLU ASP GLN ILE LEU LYS ARG ASP MET PRO PRO ALA PHE SEQRES 7 A 257 ILE LYS VAL GLU ASN ALA CYS THR LYS LEU VAL GLN ALA SEQRES 8 A 257 ALA GLN MET LEU GLN SER ASP PRO TYR SER VAL PRO ALA SEQRES 9 A 257 ARG ASP TYR LEU ILE ASP GLY SER ARG GLY ILE LEU SER SEQRES 10 A 257 GLY THR SER ASP LEU LEU LEU THR PHE ASP GLU ALA GLU SEQRES 11 A 257 VAL ARG LYS ILE ILE ARG VAL CYS LYS GLY ILE LEU GLU SEQRES 12 A 257 TYR LEU THR VAL ALA GLU VAL VAL GLU THR MET GLU ASP SEQRES 13 A 257 LEU VAL THR TYR THR LYS ASN LEU GLY PRO GLY MET THR SEQRES 14 A 257 LYS MET ALA LYS MET ILE ASP GLU ARG GLN GLN GLU LEU SEQRES 15 A 257 THR HIS GLN GLU HIS ARG VAL MET LEU VAL ASN SER MET SEQRES 16 A 257 ASN THR VAL LYS GLU LEU LEU PRO VAL LEU ILE SER ALA SEQRES 17 A 257 MET LYS ILE PHE VAL THR THR LYS ASN SER LYS ASN GLN SEQRES 18 A 257 GLY ILE GLU GLU ALA LEU LYS ASN ARG ASN PHE THR VAL SEQRES 19 A 257 GLU LYS MET SER ALA GLU ILE ASN GLU ILE ILE ARG VAL SEQRES 20 A 257 LEU GLN LEU THR SER TRP ASP GLU ASP ALA SEQRES 1 B 23 ASP ASP ILE TYR ASN LYS ALA ARG GLU VAL ILE ASN ALA SEQRES 2 B 23 VAL ASN PRO VAL ILE GLU ALA LEU GLU LYS FORMUL 3 HOH *141(H2 O) HELIX 1 1 THR A 6 MET A 26 1 21 HELIX 2 2 LEU A 40 THR A 65 1 26 HELIX 3 3 ASP A 67 LEU A 95 1 29 HELIX 4 4 SER A 101 VAL A 147 1 47 HELIX 5 5 ALA A 148 VAL A 151 5 4 HELIX 6 6 THR A 153 GLN A 180 1 28 HELIX 7 7 HIS A 184 ASN A 217 1 34 HELIX 8 8 GLY A 222 TRP A 253 1 32 HELIX 9 9 ASP B 813 GLU B 833 1 21 CISPEP 1 ASN A 217 SER A 218 0 6.00 CISPEP 2 SER A 218 LYS A 219 0 -2.57 CISPEP 3 GLN A 221 GLY A 222 0 0.77 CISPEP 4 GLU A 255 ASP A 256 0 4.09 CRYST1 141.373 141.373 141.373 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007073 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007073 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007073 0.00000