PDB Short entry for 3TLM HEADER HYDROLASE 30-AUG-11 3TLM TITLE CRYSTAL STRUCTURE OF ENDOPLASMIC RETICULUM CA2+-ATPASE (SERCA) FROM TITLE 2 BOVINE MUSCLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SERCA1, SR CA(2+)-ATPASE 1, CALCIUM PUMP 1, CALCIUM- COMPND 5 TRANSPORTING ATPASE SARCOPLASMIC RETICULUM TYPE, FAST TWITCH SKELETAL COMPND 6 MUSCLE ISOFORM, ENDOPLASMIC RETICULUM CLASS 1/2 CA(2+) ATPASE; COMPND 7 EC: 3.6.3.8 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 STRAIN: CHIANINA CATTLE; SOURCE 6 OTHER_DETAILS: CUTANEUS TRUNCI MUSCLE KEYWDS SERCA, CA-ATPASE, CALCIUM TRANSPORTER, CA, FAST-TWITCH MUSCLE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SACCHETTO,I.BERTIPAGLIA,S.GIANNETTI,L.CENDRON,F.MASCARELLO, AUTHOR 2 E.DAMIANI,E.CARAFOLI,G.ZANOTTI REVDAT 3 13-SEP-23 3TLM 1 REMARK LINK REVDAT 2 25-APR-12 3TLM 1 JRNL REVDAT 1 21-MAR-12 3TLM 0 JRNL AUTH R.SACCHETTO,I.BERTIPAGLIA,S.GIANNETTI,L.CENDRON, JRNL AUTH 2 F.MASCARELLO,E.DAMIANI,E.CARAFOLI,G.ZANOTTI JRNL TITL CRYSTAL STRUCTURE OF SARCOPLASMIC RETICULUM CA(2+)-ATPASE JRNL TITL 2 (SERCA) FROM BOVINE MUSCLE. JRNL REF J.STRUCT.BIOL. V. 178 38 2012 JRNL REFN ISSN 1047-8477 JRNL PMID 22387132 JRNL DOI 10.1016/J.JSB.2012.02.008 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.TOYOSHIMA,M.NAKASAKO,H.NOMURA,H.OGAWA REMARK 1 TITL CRYSTAL STRUCTURE OF THE CALCIUM PUMP OF SARCOPLASMIC REMARK 1 TITL 2 RETICULUM AT 2.6 A RESOLUTION. REMARK 1 REF NATURE V. 405 647 2000 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 10864315 REMARK 1 DOI 10.1038/35015017 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.OLESEN,M.PICARD,A.M.WINTHER,C.GYRUP,J.P.MORTH,C.OXVIG, REMARK 1 AUTH 2 J.V.MOLLER,P.NISSEN REMARK 1 TITL THE STRUCTURAL BASIS OF CALCIUM TRANSPORT BY THE CALCIUM REMARK 1 TITL 2 PUMP. REMARK 1 REF NATURE V. 450 1036 2007 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 18075584 REMARK 1 DOI 10.1038/NATURE06418 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.BRINI,E.CARAFOLI REMARK 1 TITL CALCIUM PUMPS IN HEALTH AND DISEASE. REMARK 1 REF PHYSIOL REV V. 89 1341 2009 REMARK 1 REFN ISSN 0031-9333 REMARK 1 PMID 19789383 REMARK 1 DOI 10.1152/PHYSREV.00032.2008 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2964064.540 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 35546 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1779 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5560 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 312 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7619 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.75000 REMARK 3 B22 (A**2) : 29.83000 REMARK 3 B33 (A**2) : -23.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -7.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.48 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.68 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.790 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 44.05 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : ACP.PAR REMARK 3 PARAMETER FILE 7 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : ACP.TOP REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3TLM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067628. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1271 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35546 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 76.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.69200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1T5S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 220MM SODIUM ACETATE, 4% T-BUTANOL, REMARK 280 5MM MERCAPTOETHANOL, 15% GLYCEROL, 6-7% PEG 6000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.29000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.63000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.29000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.63000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 876 REMARK 465 GLU A 877 REMARK 465 HIS A 878 REMARK 465 SER A 879 REMARK 465 PRO A 880 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 925 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 4 165.00 177.99 REMARK 500 THR A 8 -169.22 -78.58 REMARK 500 THR A 9 -77.06 -44.27 REMARK 500 LEU A 24 146.48 -35.29 REMARK 500 ASN A 39 73.37 -67.36 REMARK 500 ALA A 43 -29.30 -29.60 REMARK 500 GLU A 44 63.67 -66.53 REMARK 500 GLU A 45 -12.54 -147.66 REMARK 500 LYS A 47 99.50 -165.41 REMARK 500 LEU A 54 61.16 -63.21 REMARK 500 PHE A 57 73.98 -102.00 REMARK 500 GLU A 58 -23.14 -162.77 REMARK 500 LEU A 61 -164.82 -62.12 REMARK 500 VAL A 62 -48.59 64.97 REMARK 500 GLU A 79 116.37 -31.54 REMARK 500 GLU A 82 40.13 -84.62 REMARK 500 GLU A 83 -128.96 -104.82 REMARK 500 THR A 84 -42.65 70.08 REMARK 500 GLU A 121 5.08 -64.62 REMARK 500 GLU A 123 82.06 96.61 REMARK 500 VAL A 155 117.63 -30.82 REMARK 500 THR A 172 153.86 171.20 REMARK 500 LEU A 180 -66.80 -92.61 REMARK 500 THR A 181 -72.78 -75.22 REMARK 500 GLU A 183 93.18 -36.31 REMARK 500 VAL A 185 147.52 174.69 REMARK 500 ASP A 196 108.23 -48.15 REMARK 500 PRO A 197 -94.10 -60.05 REMARK 500 ARG A 198 38.73 -68.19 REMARK 500 GLN A 202 -8.71 -47.09 REMARK 500 LYS A 204 73.45 -49.68 REMARK 500 LYS A 205 29.47 -78.26 REMARK 500 VAL A 223 104.55 -49.62 REMARK 500 THR A 226 -148.57 -126.96 REMARK 500 GLU A 231 21.05 -62.06 REMARK 500 ILE A 232 -10.26 -140.33 REMARK 500 ARG A 236 -86.86 -66.09 REMARK 500 ALA A 241 95.40 59.90 REMARK 500 GLN A 244 159.15 -43.13 REMARK 500 LYS A 246 159.01 -46.05 REMARK 500 ILE A 274 40.40 -70.60 REMARK 500 ASN A 275 -103.91 -135.08 REMARK 500 ILE A 276 -56.93 57.44 REMARK 500 ASP A 281 165.22 -43.06 REMARK 500 VAL A 304 -16.71 -46.15 REMARK 500 PRO A 308 79.66 -60.10 REMARK 500 SER A 338 -82.64 -56.62 REMARK 500 LYS A 352 -77.36 -95.90 REMARK 500 ASP A 370 -66.70 -93.03 REMARK 500 PRO A 391 36.80 -78.73 REMARK 500 REMARK 500 THIS ENTRY HAS 109 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 304 O REMARK 620 2 ALA A 305 O 88.6 REMARK 620 3 ILE A 307 O 90.4 126.4 REMARK 620 4 GLU A 309 OE2 100.3 158.2 73.8 REMARK 620 5 GLU A 309 OE1 57.8 146.2 63.1 45.2 REMARK 620 6 ASN A 795 OD1 57.8 92.2 130.7 76.4 68.0 REMARK 620 7 ASP A 799 OD1 134.3 60.0 134.5 100.8 141.4 88.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1005 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 351 OD1 REMARK 620 2 THR A 353 O 70.2 REMARK 620 3 ASP A 702 OD2 72.1 97.1 REMARK 620 4 ASP A 702 OD1 108.8 79.1 49.9 REMARK 620 5 ACP A1001 O3G 80.1 88.9 147.4 161.1 REMARK 620 6 HOH A1011 O 176.7 106.9 109.9 71.4 98.7 REMARK 620 7 HOH A1012 O 101.6 165.3 68.4 92.6 102.0 81.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1006 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 710 O REMARK 620 2 LYS A 711 O 73.6 REMARK 620 3 ALA A 713 O 82.6 60.6 REMARK 620 4 GLU A 731 OE2 90.8 157.4 134.8 REMARK 620 5 GLU A 731 OE1 123.7 138.8 148.0 40.4 REMARK 620 6 HOH A1010 O 154.8 89.3 72.8 110.3 81.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 767 OD1 REMARK 620 2 GLU A 770 OE1 62.9 REMARK 620 3 THR A 798 OG1 162.8 113.8 REMARK 620 4 ASP A 799 OD2 73.0 130.5 101.5 REMARK 620 5 GLU A 907 OE2 144.5 92.8 49.0 136.6 REMARK 620 6 GLU A 907 OE1 103.6 57.3 86.5 162.1 41.6 REMARK 620 7 HOH A1028 O 79.1 66.5 84.2 84.6 116.4 112.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SU4 RELATED DB: PDB REMARK 900 CALCIUM ATPASE FROM RABBIT MUSCLE E1 FORM REMARK 900 RELATED ID: 1T5S RELATED DB: PDB REMARK 900 CALCIUM ATPASE FROM RABBIT MUSCLE E1 FORM DBREF 3TLM A 1 992 UNP Q0VCY0 AT2A1_BOVIN 1 992 SEQRES 1 A 992 MET GLU ALA ALA HIS SER LYS THR THR GLU GLU CYS LEU SEQRES 2 A 992 ALA TYR PHE GLY VAL SER GLU THR THR GLY LEU THR PRO SEQRES 3 A 992 ASP GLN VAL LYS ARG HIS LEU GLU LYS TYR GLY HIS ASN SEQRES 4 A 992 GLU LEU PRO ALA GLU GLU GLY LYS SER LEU TRP GLU LEU SEQRES 5 A 992 VAL LEU GLU GLN PHE GLU ASP LEU LEU VAL ARG ILE LEU SEQRES 6 A 992 LEU LEU ALA ALA CYS ILE SER PHE VAL LEU ALA TRP PHE SEQRES 7 A 992 GLU GLU GLY GLU GLU THR VAL THR ALA PHE VAL GLU PRO SEQRES 8 A 992 PHE VAL ILE LEU LEU ILE LEU ILE ALA ASN ALA ILE VAL SEQRES 9 A 992 GLY VAL TRP GLN GLU ARG ASN ALA GLU ASN ALA ILE GLU SEQRES 10 A 992 ALA LEU LYS GLU TYR GLU PRO GLU MET GLY LYS VAL TYR SEQRES 11 A 992 ARG ALA ASP ARG LYS SER VAL GLN ARG ILE LYS ALA ARG SEQRES 12 A 992 ASP ILE VAL PRO GLY ASP ILE VAL GLU VAL ALA VAL GLY SEQRES 13 A 992 ASP LYS VAL PRO ALA ASP ILE ARG ILE LEU THR ILE LYS SEQRES 14 A 992 SER THR THR LEU ARG VAL ASP GLN SER ILE LEU THR GLY SEQRES 15 A 992 GLU SER VAL SER VAL ILE LYS HIS THR GLU PRO VAL PRO SEQRES 16 A 992 ASP PRO ARG ALA VAL ASN GLN ASP LYS LYS ASN MET LEU SEQRES 17 A 992 PHE SER GLY THR ASN ILE ALA ALA GLY LYS ALA ILE GLY SEQRES 18 A 992 ILE VAL ALA THR THR GLY VAL GLY THR GLU ILE GLY LYS SEQRES 19 A 992 ILE ARG ASP GLN MET ALA ALA THR GLU GLN ASP LYS THR SEQRES 20 A 992 PRO LEU GLN GLN LYS LEU ASP GLU PHE GLY GLU GLN LEU SEQRES 21 A 992 SER LYS VAL ILE SER LEU ILE CYS VAL ALA VAL TRP LEU SEQRES 22 A 992 ILE ASN ILE GLY HIS PHE ASN ASP PRO VAL HIS GLY GLY SEQRES 23 A 992 SER TRP ILE ARG GLY ALA ILE TYR TYR PHE LYS ILE ALA SEQRES 24 A 992 VAL ALA LEU ALA VAL ALA ALA ILE PRO GLU GLY LEU PRO SEQRES 25 A 992 ALA VAL ILE THR THR CYS LEU ALA LEU GLY THR ARG ARG SEQRES 26 A 992 MET ALA LYS LYS ASN ALA ILE VAL ARG SER LEU PRO SER SEQRES 27 A 992 VAL GLU THR LEU GLY CYS THR SER VAL ILE CYS SER ASP SEQRES 28 A 992 LYS THR GLY THR LEU THR THR ASN GLN MET SER VAL CYS SEQRES 29 A 992 LYS MET PHE ILE ILE ASP ARG ILE ASP GLY ASP LEU CYS SEQRES 30 A 992 LEU LEU ASN GLU PHE SER VAL THR GLY SER THR TYR ALA SEQRES 31 A 992 PRO GLU GLY GLU VAL LEU LYS ASN ASP LYS PRO VAL ARG SEQRES 32 A 992 SER GLY GLN TYR ASP GLY LEU VAL GLU LEU ALA THR ILE SEQRES 33 A 992 CYS ALA LEU CYS ASN ASP SER SER LEU ASP PHE ASN GLU SEQRES 34 A 992 THR LYS GLY ILE TYR GLU LYS VAL GLY GLU ALA THR GLU SEQRES 35 A 992 THR ALA LEU THR THR LEU VAL GLU LYS MET ASN VAL PHE SEQRES 36 A 992 ASN THR GLU VAL ARG ASN LEU SER LYS VAL GLU ARG ALA SEQRES 37 A 992 ASN ALA CYS ASN SER VAL ILE ARG GLN LEU MET LYS LYS SEQRES 38 A 992 GLU PHE THR LEU GLU PHE SER ARG ASP ARG LYS SER MET SEQRES 39 A 992 SER VAL TYR CYS SER PRO ALA LYS SER ARG ALA ALA VAL SEQRES 40 A 992 GLY ASN LYS MET PHE VAL LYS GLY ALA PRO GLU GLY VAL SEQRES 41 A 992 ILE ASP ARG CYS ASN TYR VAL ARG VAL GLY THR THR ARG SEQRES 42 A 992 VAL PRO MET THR GLY PRO VAL LYS GLU LYS ILE LEU SER SEQRES 43 A 992 VAL ILE LYS GLU TRP GLY THR GLY ARG ASP THR LEU ARG SEQRES 44 A 992 CYS LEU ALA LEU ALA THR ARG ASP THR PRO PRO LYS ARG SEQRES 45 A 992 GLU GLU MET VAL LEU ASP ASP SER THR LYS PHE MET GLU SEQRES 46 A 992 TYR GLU THR ASP LEU THR PHE VAL GLY VAL VAL GLY MET SEQRES 47 A 992 LEU ASP PRO PRO ARG LYS GLU VAL MET GLY SER ILE GLN SEQRES 48 A 992 LEU CYS ARG ASP ALA GLY ILE ARG VAL ILE MET ILE THR SEQRES 49 A 992 GLY ASP ASN LYS GLY THR ALA ILE ALA ILE CYS ARG ARG SEQRES 50 A 992 ILE GLY ILE PHE GLY GLU ASN GLU ASP VAL ALA ASP ARG SEQRES 51 A 992 ALA TYR THR GLY ARG GLU PHE ASP ASP LEU PRO LEU ALA SEQRES 52 A 992 GLU GLN ARG GLU ALA CYS ARG ARG ALA CYS CYS PHE ALA SEQRES 53 A 992 ARG VAL GLU PRO THR HIS LYS SER LYS ILE VAL GLU TYR SEQRES 54 A 992 LEU GLN SER PHE ASP GLU ILE THR ALA MET THR GLY ASP SEQRES 55 A 992 GLY VAL ASN ASP ALA PRO ALA LEU LYS LYS ALA GLU ILE SEQRES 56 A 992 GLY ILE ALA MET GLY SER GLY THR ALA VAL ALA LYS THR SEQRES 57 A 992 ALA SER GLU MET VAL LEU ALA ASP ASP ASN PHE SER THR SEQRES 58 A 992 ILE VAL ALA ALA VAL GLU GLU GLY ARG ALA ILE TYR ASN SEQRES 59 A 992 ASN MET LYS GLN PHE ILE ARG TYR LEU ILE SER SER ASN SEQRES 60 A 992 VAL GLY GLU VAL VAL CYS ILE PHE LEU THR ALA ALA LEU SEQRES 61 A 992 GLY LEU PRO GLU ALA LEU ILE PRO VAL GLN LEU LEU TRP SEQRES 62 A 992 VAL ASN LEU VAL THR ASP GLY LEU PRO ALA THR ALA LEU SEQRES 63 A 992 GLY PHE ASN PRO PRO ASP LEU ASP ILE MET ASP ARG PRO SEQRES 64 A 992 PRO ARG THR PRO LYS GLU PRO LEU ILE SER GLY TRP LEU SEQRES 65 A 992 PHE PHE ARG TYR MET ALA ILE GLY GLY TYR VAL GLY ALA SEQRES 66 A 992 ALA THR VAL GLY ALA ALA ALA TRP TRP PHE LEU TYR ALA SEQRES 67 A 992 GLU ASP GLY PRO HIS VAL THR TYR SER GLN LEU THR HIS SEQRES 68 A 992 PHE MET LYS CYS SER GLU HIS SER PRO ASP PHE GLU GLY SEQRES 69 A 992 VAL ASP CYS GLU VAL PHE GLU ALA PRO GLN PRO MET THR SEQRES 70 A 992 MET ALA LEU SER VAL LEU VAL THR ILE GLU MET CYS ASN SEQRES 71 A 992 ALA LEU ASN SER LEU SER GLU ASN GLN SER LEU VAL ARG SEQRES 72 A 992 MET PRO PRO TRP VAL ASN ILE TRP LEU VAL GLY SER ILE SEQRES 73 A 992 GLY LEU SER MET SER LEU HIS PHE LEU ILE LEU TYR VAL SEQRES 74 A 992 ASP PRO LEU PRO MET ILE PHE LYS LEU GLN ALA LEU ASP SEQRES 75 A 992 LEU TYR HIS TRP LEU MET VAL LEU LYS ILE SER LEU PRO SEQRES 76 A 992 VAL ILE GLY LEU ASP GLU ILE LEU LYS PHE VAL ALA ARG SEQRES 77 A 992 ASN TYR LEU GLU HET CA A1003 1 HET CA A1004 1 HET MG A1005 1 HET K A1006 1 HET ACP A1001 31 HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 2 CA 2(CA 2+) FORMUL 4 MG MG 2+ FORMUL 5 K K 1+ FORMUL 6 ACP C11 H18 N5 O12 P3 FORMUL 7 HOH *33(H2 O) HELIX 1 1 THR A 8 GLY A 17 1 10 HELIX 2 2 THR A 25 GLY A 37 1 13 HELIX 3 3 ASP A 59 GLU A 79 1 21 HELIX 4 4 PHE A 88 GLU A 121 1 34 HELIX 5 5 ARG A 143 ILE A 145 5 3 HELIX 6 6 VAL A 200 LYS A 204 5 5 HELIX 7 7 THR A 247 ILE A 274 1 28 HELIX 8 8 SER A 287 ILE A 307 1 21 HELIX 9 9 GLY A 310 LYS A 329 1 20 HELIX 10 10 PRO A 337 GLY A 343 1 7 HELIX 11 11 ARG A 403 GLN A 406 5 4 HELIX 12 12 TYR A 407 CYS A 420 1 14 HELIX 13 13 GLU A 439 ASN A 453 1 15 HELIX 14 14 SER A 463 ALA A 468 1 6 HELIX 15 15 ASN A 469 GLN A 477 1 9 HELIX 16 16 ALA A 516 ARG A 523 1 8 HELIX 17 17 THR A 537 THR A 553 1 17 HELIX 18 18 LYS A 571 MET A 575 5 5 HELIX 19 19 ASP A 579 THR A 581 5 3 HELIX 20 20 LYS A 582 GLU A 587 1 6 HELIX 21 21 GLU A 605 ALA A 616 1 12 HELIX 22 22 ASN A 627 GLY A 639 1 13 HELIX 23 23 GLY A 654 LEU A 660 1 7 HELIX 24 24 PRO A 661 ALA A 672 1 12 HELIX 25 25 THR A 681 SER A 692 1 12 HELIX 26 26 GLY A 703 ASN A 705 5 3 HELIX 27 27 ASP A 706 ALA A 713 1 8 HELIX 28 28 THR A 723 SER A 730 1 8 HELIX 29 29 PHE A 739 PHE A 775 1 37 HELIX 30 30 ILE A 787 ASP A 799 1 13 HELIX 31 31 GLY A 800 ALA A 805 1 6 HELIX 32 32 LEU A 806 ASN A 809 5 4 HELIX 33 33 ASP A 814 ARG A 818 5 5 HELIX 34 34 SER A 829 ALA A 845 1 17 HELIX 35 35 VAL A 848 LEU A 856 1 9 HELIX 36 36 GLU A 888 ALA A 892 5 5 HELIX 37 37 PRO A 893 LEU A 912 1 20 HELIX 38 38 ASN A 913 LEU A 915 5 3 HELIX 39 39 PRO A 925 VAL A 928 5 4 HELIX 40 40 ASN A 929 VAL A 949 1 21 HELIX 41 41 LEU A 952 PHE A 956 5 5 HELIX 42 42 TYR A 964 LEU A 974 1 11 HELIX 43 43 LEU A 974 ARG A 988 1 15 SHEET 1 A 6 GLN A 138 LYS A 141 0 SHEET 2 A 6 MET A 126 TYR A 130 -1 N GLY A 127 O ILE A 140 SHEET 3 A 6 ILE A 150 ALA A 154 -1 O GLU A 152 N LYS A 128 SHEET 4 A 6 LYS A 218 THR A 225 -1 O GLY A 221 N VAL A 151 SHEET 5 A 6 ASP A 162 ILE A 168 -1 N THR A 167 O ILE A 220 SHEET 6 A 6 MET A 207 LEU A 208 -1 O LEU A 208 N ILE A 163 SHEET 1 B 3 VAL A 187 ILE A 188 0 SHEET 2 B 3 ARG A 174 ASP A 176 -1 N VAL A 175 O VAL A 187 SHEET 3 B 3 ASN A 213 ALA A 216 -1 O ASN A 213 N ASP A 176 SHEET 1 C 8 ALA A 331 VAL A 333 0 SHEET 2 C 8 MET A 732 LEU A 734 -1 O VAL A 733 N ILE A 332 SHEET 3 C 8 ILE A 715 MET A 719 1 N ALA A 718 O MET A 732 SHEET 4 C 8 THR A 697 GLY A 701 1 N MET A 699 O ILE A 717 SHEET 5 C 8 VAL A 347 ASP A 351 1 N CYS A 349 O ALA A 698 SHEET 6 C 8 ARG A 619 ILE A 623 1 O ARG A 619 N ILE A 348 SHEET 7 C 8 CYS A 674 ALA A 676 1 O PHE A 675 N MET A 622 SHEET 8 C 8 TYR A 652 THR A 653 1 N TYR A 652 O ALA A 676 SHEET 1 D 9 LYS A 400 PRO A 401 0 SHEET 2 D 9 VAL A 395 LYS A 397 -1 N LYS A 397 O LYS A 400 SHEET 3 D 9 LEU A 376 VAL A 384 -1 N SER A 383 O LEU A 396 SHEET 4 D 9 SER A 362 ASP A 373 -1 N MET A 366 O PHE A 382 SHEET 5 D 9 LEU A 590 LEU A 599 -1 O GLY A 597 N LYS A 365 SHEET 6 D 9 ARG A 559 ARG A 566 -1 N ARG A 559 O MET A 598 SHEET 7 D 9 LYS A 510 GLY A 515 -1 N MET A 511 O ARG A 566 SHEET 8 D 9 SER A 493 PRO A 500 -1 N CYS A 498 O LYS A 510 SHEET 9 D 9 MET A 479 LEU A 485 -1 N PHE A 483 O TYR A 497 SHEET 1 E 7 LYS A 400 PRO A 401 0 SHEET 2 E 7 VAL A 395 LYS A 397 -1 N LYS A 397 O LYS A 400 SHEET 3 E 7 LEU A 376 VAL A 384 -1 N SER A 383 O LEU A 396 SHEET 4 E 7 SER A 362 ASP A 373 -1 N MET A 366 O PHE A 382 SHEET 5 E 7 LEU A 590 LEU A 599 -1 O GLY A 597 N LYS A 365 SHEET 6 E 7 CYS A 524 VAL A 529 1 N TYR A 526 O PHE A 592 SHEET 7 E 7 THR A 532 PRO A 535 -1 O VAL A 534 N VAL A 527 SHEET 1 F 2 SER A 424 ASN A 428 0 SHEET 2 F 2 ILE A 433 VAL A 437 -1 O GLU A 435 N ASP A 426 LINK O VAL A 304 CA CA A1003 1555 1555 3.11 LINK O ALA A 305 CA CA A1003 1555 1555 2.82 LINK O ILE A 307 CA CA A1003 1555 1555 2.88 LINK OE2 GLU A 309 CA CA A1003 1555 1555 2.68 LINK OE1 GLU A 309 CA CA A1003 1555 1555 2.99 LINK OD1 ASP A 351 MG MG A1005 1555 1555 2.30 LINK O THR A 353 MG MG A1005 1555 1555 2.16 LINK OD2 ASP A 702 MG MG A1005 1555 1555 2.04 LINK OD1 ASP A 702 MG MG A1005 1555 1555 2.82 LINK O LEU A 710 K K A1006 1555 1555 3.07 LINK O LYS A 711 K K A1006 1555 1555 3.06 LINK O ALA A 713 K K A1006 1555 1555 3.11 LINK OE2 GLU A 731 K K A1006 1555 1555 3.06 LINK OE1 GLU A 731 K K A1006 1555 1555 3.30 LINK OD1 ASN A 767 CA CA A1004 1555 1555 2.77 LINK OE1 GLU A 770 CA CA A1004 1555 1555 2.66 LINK OD1 ASN A 795 CA CA A1003 1555 1555 2.71 LINK OG1 THR A 798 CA CA A1004 1555 1555 2.87 LINK OD1 ASP A 799 CA CA A1003 1555 1555 2.72 LINK OD2 ASP A 799 CA CA A1004 1555 1555 2.79 LINK OE2 GLU A 907 CA CA A1004 1555 1555 3.03 LINK OE1 GLU A 907 CA CA A1004 1555 1555 3.13 LINK O3G ACP A1001 MG MG A1005 1555 1555 2.28 LINK CA CA A1004 O HOH A1028 1555 1555 2.43 LINK MG MG A1005 O HOH A1011 1555 1555 2.43 LINK MG MG A1005 O HOH A1012 1555 1555 2.07 LINK K K A1006 O HOH A1010 1555 1555 3.24 SITE 1 AC1 6 VAL A 304 ALA A 305 ILE A 307 GLU A 309 SITE 2 AC1 6 ASN A 795 ASP A 799 SITE 1 AC2 6 ASN A 767 GLU A 770 THR A 798 ASP A 799 SITE 2 AC2 6 GLU A 907 HOH A1028 SITE 1 AC3 6 ASP A 351 THR A 353 ASP A 702 ACP A1001 SITE 2 AC3 6 HOH A1011 HOH A1012 SITE 1 AC4 4 LEU A 710 LYS A 711 ALA A 713 GLU A 731 SITE 1 AC5 17 ASP A 351 THR A 353 GLU A 442 PHE A 487 SITE 2 AC5 17 ARG A 489 LYS A 514 GLY A 515 ALA A 516 SITE 3 AC5 17 ARG A 559 LEU A 561 THR A 624 GLY A 625 SITE 4 AC5 17 ASP A 626 ARG A 677 LYS A 683 MG A1005 SITE 5 AC5 17 HOH A1014 CRYST1 156.580 75.260 151.800 90.00 108.30 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006387 0.000000 0.002112 0.00000 SCALE2 0.000000 0.013287 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006939 0.00000