PDB Short entry for 3TRA HEADER T-RNA 06-NOV-87 3TRA TITLE RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST TITLE 2 ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNAASP; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932 KEYWDS T-RNA, SINGLE STRAND, LOOPS EXPDTA X-RAY DIFFRACTION AUTHOR E.WESTHOF,P.DUMAS,D.MORAS REVDAT 3 25-AUG-09 3TRA 1 SOURCE REVDAT 2 24-FEB-09 3TRA 1 VERSN REVDAT 1 06-NOV-87 3TRA 0 SPRSDE 19-APR-89 3TRA 9TNA JRNL AUTH E.WESTHOF,P.DUMAS,D.MORAS JRNL TITL RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF JRNL TITL 2 YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA JRNL TITL 3 CRYSTALS. JRNL REF ACTA CRYSTALLOGR.,SECT.A V. 44 112 1988 JRNL REFN ISSN 0108-7673 JRNL PMID 3272146 JRNL DOI 10.1107/S010876738700446X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.WESTHOF,P.DUMAS,D.MORAS REMARK 1 TITL HYDRATION OF TRANSFER RNA MOLECULES. A REMARK 1 TITL 2 CRYSTALLOGRAPHIC STUDY REMARK 1 REF BIOCHIMIE V. 70 145 1988 REMARK 1 REFN ISSN 0300-9084 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.B.COMARMOND,R.GIEGE,J.C.THIERRY,D.MORAS,J.FISCHER REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF YEAST T-RNA-ASP. I. REMARK 1 TITL 2 STRUCTURE DETERMINATION REMARK 1 REF ACTA CRYSTALLOGR.,SECT.B V. 42 272 1986 REMARK 1 REFN ISSN 0108-7681 REMARK 1 REFERENCE 3 REMARK 1 AUTH D.MORAS,A.-C.DOCK,P.DUMAS,E.WESTHOF,P.ROMBY, REMARK 1 AUTH 2 J.-P.EBEL,R.GIEGE REMARK 1 TITL ANTICODON-ANTICODON INTERACTION INDUCES REMARK 1 TITL 2 CONFORMATIONAL CHANGES IN T-RNA. YEAST T-RNA-ASP, A REMARK 1 TITL 3 MODEL FOR T-RNA-M-RNA RECOGNITION REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 83 932 1986 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 4 REMARK 1 AUTH E.WESTHOF,P.DUMAS,D.MORAS REMARK 1 TITL CRYSTALLOGRAPHIC REFINEMENT OF YEAST ASPARTIC ACID REMARK 1 TITL 2 TRANSFER RNA REMARK 1 REF J.MOL.BIOL. V. 184 119 1985 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 5 REMARK 1 AUTH P.DUMAS,J.P.EBEL,R.GIEGE,D.MORAS,J.C.THIERRY, REMARK 1 AUTH 2 E.WESTHOF REMARK 1 TITL CRYSTAL STRUCTURE OF YEAST T-RNA-ASP. ATOMIC REMARK 1 TITL 2 COORDINATES REMARK 1 REF BIOCHIMIE V. 67 597 1985 REMARK 1 REFN ISSN 0300-9084 REMARK 1 REFERENCE 6 REMARK 1 AUTH E.WESTHOF,P.DUMAS,D.MORAS REMARK 1 TITL LOOP STEREOCHEMISTRY AND DYNAMICS IN TRANSFER RNA REMARK 1 REF J.BIOMOL.STRUCT.DYN. V. 1 337 1983 REMARK 1 REFN ISSN 0739-1102 REMARK 1 REFERENCE 7 REMARK 1 AUTH D.MORAS,M.B.COMARMOND,J.FISCHER,R.WEISS, REMARK 1 AUTH 2 J.C.THIERRY,J.P.EBEL,R.GIEGE REMARK 1 TITL CRYSTAL STRUCTURE OF YEAST T-RNA-ASP REMARK 1 REF NATURE V. 288 669 1980 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 8 REMARK 1 AUTH R.GIEGE,D.MORAS,J.C.THIERRY REMARK 1 TITL YEAST TRANSFER RNA-ASP. A NEW HIGH-RESOLUTION X-RAY REMARK 1 TITL 2 DIFFRACTING CRYSTAL FORM OF A TRANSFER RNA REMARK 1 REF J.MOL.BIOL. V. 115 91 1977 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NUCLSQ REMARK 3 AUTHORS : WESTHOF,DUMAS,MORAS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 4585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 1540 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 115 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BOND DISTANCE (A) : NULL ; NULL REMARK 3 SUGAR-BASE BOND ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 PHOSPHATE BONDS DISTANCE (A) : NULL ; NULL REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION CONTACT (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION CONTACT (A) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BONDS (A**2) : NULL ; NULL REMARK 3 SUGAR-BASE ANGLES (A**2) : NULL ; NULL REMARK 3 PHOSPHATE BONDS (A**2) : NULL ; NULL REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TRA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.020930 0.000000 1.000000 74.74959 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.74959 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 -0.020930 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.14954 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.99973 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 -0.31551 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.14954 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.99973 REMARK 290 SMTRY3 6 0.020930 0.000000 1.000000 74.43408 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.14954 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.99973 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.43408 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.14954 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 33.99973 REMARK 290 SMTRY3 8 -0.020930 0.000000 -1.000000 -0.31551 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 C A 73 REMARK 465 C A 74 REMARK 465 A A 75 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OP2 U A 1 C1' C A 55 5545 1.69 REMARK 500 OP2 U A 1 O2 C A 55 5545 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U A 1 C2 - N3 - C4 ANGL. DEV. = -5.3 DEGREES REMARK 500 U A 1 N3 - C4 - C5 ANGL. DEV. = 5.0 DEGREES REMARK 500 C A 2 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 C A 2 N3 - C4 - C5 ANGL. DEV. = -2.5 DEGREES REMARK 500 U A 1 C3' - O3' - P ANGL. DEV. = 14.2 DEGREES REMARK 500 G A 4 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 G A 4 C5 - C6 - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 U A 5 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 U A 5 N1 - C2 - N3 ANGL. DEV. = 4.9 DEGREES REMARK 500 U A 5 C2 - N3 - C4 ANGL. DEV. = -7.0 DEGREES REMARK 500 U A 5 N3 - C4 - C5 ANGL. DEV. = 5.5 DEGREES REMARK 500 U A 5 C3' - O3' - P ANGL. DEV. = 8.4 DEGREES REMARK 500 A A 7 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 A A 7 N1 - C2 - N3 ANGL. DEV. = -3.0 DEGREES REMARK 500 U A 8 C2 - N3 - C4 ANGL. DEV. = -4.2 DEGREES REMARK 500 U A 8 N3 - C4 - C5 ANGL. DEV. = 4.4 DEGREES REMARK 500 A A 9 N1 - C2 - N3 ANGL. DEV. = -3.6 DEGREES REMARK 500 A A 9 C5 - C6 - N1 ANGL. DEV. = -3.0 DEGREES REMARK 500 G A 10 O5' - C5' - C4' ANGL. DEV. = -7.1 DEGREES REMARK 500 U A 11 O5' - C5' - C4' ANGL. DEV. = -9.8 DEGREES REMARK 500 U A 11 N3 - C4 - C5 ANGL. DEV. = 4.1 DEGREES REMARK 500 U A 12 C2 - N3 - C4 ANGL. DEV. = -4.3 DEGREES REMARK 500 U A 12 N3 - C4 - C5 ANGL. DEV. = 4.5 DEGREES REMARK 500 A A 14 N1 - C2 - N3 ANGL. DEV. = -3.2 DEGREES REMARK 500 G A 17 O5' - C5' - C4' ANGL. DEV. = -5.2 DEGREES REMARK 500 G A 17 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 G A 18 C5 - C6 - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 C A 20 N3 - C4 - C5 ANGL. DEV. = -2.5 DEGREES REMARK 500 A A 21 O5' - C5' - C4' ANGL. DEV. = -4.9 DEGREES REMARK 500 A A 21 N1 - C2 - N3 ANGL. DEV. = -3.1 DEGREES REMARK 500 G A 22 O5' - C5' - C4' ANGL. DEV. = -5.6 DEGREES REMARK 500 G A 22 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 A A 23 N1 - C2 - N3 ANGL. DEV. = -3.1 DEGREES REMARK 500 A A 23 C5 - C6 - N1 ANGL. DEV. = -3.3 DEGREES REMARK 500 A A 24 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 A A 24 C6 - N1 - C2 ANGL. DEV. = 4.4 DEGREES REMARK 500 A A 24 N1 - C2 - N3 ANGL. DEV. = -3.8 DEGREES REMARK 500 U A 25 C2 - N3 - C4 ANGL. DEV. = -4.4 DEGREES REMARK 500 U A 25 N3 - C4 - C5 ANGL. DEV. = 4.5 DEGREES REMARK 500 G A 26 O4' - C1' - N9 ANGL. DEV. = 5.7 DEGREES REMARK 500 G A 28 O5' - P - OP2 ANGL. DEV. = 7.3 DEGREES REMARK 500 G A 28 O5' - C5' - C4' ANGL. DEV. = -6.9 DEGREES REMARK 500 C A 31 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 U A 33 C2 - N3 - C4 ANGL. DEV. = -4.7 DEGREES REMARK 500 U A 33 N3 - C4 - C5 ANGL. DEV. = 4.7 DEGREES REMARK 500 G A 34 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 U A 35 C2 - N3 - C4 ANGL. DEV. = -4.9 DEGREES REMARK 500 U A 35 N3 - C4 - C5 ANGL. DEV. = 4.7 DEGREES REMARK 500 U A 35 C3' - O3' - P ANGL. DEV. = 8.0 DEGREES REMARK 500 C A 38 O5' - C5' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 86 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 138 DISTANCE = 8.16 ANGSTROMS REMARK 525 HOH A 174 DISTANCE = 5.79 ANGSTROMS DBREF 3TRA A 1 75 PDB 3TRA 3TRA 1 75 SEQRES 1 A 75 U C C G U G A U A G U U PSU SEQRES 2 A 75 A A H2U G G H2U C A G A A U G SEQRES 3 A 75 G G C G C PSU U G U C 1MG C G SEQRES 4 A 75 U G C C A G A U 5MC G G G G SEQRES 5 A 75 5MU PSU C A A U U C C C C G U SEQRES 6 A 75 C G C G G A G C C A MODRES 3TRA PSU A 13 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 3TRA H2U A 16 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 3TRA H2U A 19 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 3TRA PSU A 32 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 3TRA 1MG A 37 G 1N-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 3TRA 5MC A 48 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 3TRA 5MU A 53 U 5-METHYLURIDINE 5'-MONOPHOSPHATE MODRES 3TRA PSU A 54 U PSEUDOURIDINE-5'-MONOPHOSPHATE HET PSU A 13 20 HET H2U A 16 20 HET H2U A 19 20 HET PSU A 32 20 HET 1MG A 37 24 HET 5MC A 48 21 HET 5MU A 53 21 HET PSU A 54 20 HET MG A 76 1 HETNAM PSU PSEUDOURIDINE-5'-MONOPHOSPHATE HETNAM H2U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE HETNAM 1MG 1N-METHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM 5MC 5-METHYLCYTIDINE-5'-MONOPHOSPHATE HETNAM 5MU 5-METHYLURIDINE 5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 1 PSU 3(C9 H13 N2 O9 P) FORMUL 1 H2U 2(C9 H15 N2 O9 P) FORMUL 1 1MG C11 H16 N5 O8 P FORMUL 1 5MC C10 H16 N3 O8 P FORMUL 1 5MU C10 H15 N2 O9 P FORMUL 2 MG MG 2+ FORMUL 3 HOH *115(H2 O) LINK P PSU A 13 O3' U A 12 1555 1555 1.60 LINK O3' PSU A 13 P A A 14 1555 1555 1.60 LINK P H2U A 16 O3' A A 15 1555 1555 1.61 LINK O3' H2U A 16 P G A 17 1555 1555 1.63 LINK P H2U A 19 O3' G A 18 1555 1555 1.61 LINK O3' H2U A 19 P C A 20 1555 1555 1.63 LINK P PSU A 32 O3' C A 31 1555 1555 1.62 LINK O3' PSU A 32 P U A 33 1555 1555 1.60 LINK P 1MG A 37 O3' C A 36 1555 1555 1.63 LINK O3' 1MG A 37 P C A 38 1555 1555 1.62 LINK P 5MC A 48 O3' U A 47 1555 1555 1.62 LINK O3' 5MC A 48 P G A 49 1555 1555 1.60 LINK P 5MU A 53 O3' G A 52 1555 1555 1.62 LINK O3' 5MU A 53 P PSU A 54 1555 1555 1.62 LINK O3' PSU A 54 P C A 55 1555 1555 1.62 CRYST1 60.300 68.000 149.500 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016584 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014706 0.000000 0.00000 SCALE3 0.000070 0.000000 0.006689 0.00000