PDB Short entry for 3U74 HEADER HYDROLASE RECEPTOR 13-OCT-11 3U74 TITLE CRYSTAL STRUCTURE OF STABILIZED HUMAN UPAR MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: UROKINASE PLASMINOGEN ACTIVATOR SURFACE RECEPTOR; COMPND 3 CHAIN: U; COMPND 4 SYNONYM: U-PAR, UPAR, MONOCYTE ACTIVATION ANTIGEN MO3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: S2 CELLS; SOURCE 6 GENE: MO3, PLAUR, UPAR; SOURCE 7 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMT/BIP KEYWDS GLYCOSYLATION, HYDROLASE RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR M.D.HUANG,X.XU,C.YUAN REVDAT 3 13-SEP-23 3U74 1 HETSYN REVDAT 2 29-JUL-20 3U74 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 18-APR-12 3U74 0 JRNL AUTH X.XU,H.GARDSVOLL,C.YUAN,L.LIN,M.PLOUG,M.HUANG JRNL TITL CRYSTAL STRUCTURE OF THE UROKINASE RECEPTOR IN A LIGAND-FREE JRNL TITL 2 FORM. JRNL REF J.MOL.BIOL. V. 416 629 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22285761 JRNL DOI 10.1016/J.JMB.2011.12.058 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 14130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 706 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 888 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2017 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 22 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.61000 REMARK 3 B22 (A**2) : -1.61000 REMARK 3 B33 (A**2) : 2.41000 REMARK 3 B12 (A**2) : -0.80000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.242 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.186 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.848 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2104 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2843 ; 2.008 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 260 ; 8.477 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;35.520 ;24.400 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 359 ;21.467 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;23.551 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 312 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1576 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 4 REMARK 4 3U74 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068389. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1YWH AND 2FD6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, PH 7.5, 2% (W/V) PEG400, REMARK 280 2 M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 295.0K, PH 7.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.61750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.11078 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.19033 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 55.61750 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 32.11078 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.19033 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 55.61750 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 32.11078 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.19033 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.22156 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 52.38067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 64.22156 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 52.38067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 64.22156 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 52.38067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: U, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER U 81 REMARK 465 GLY U 82 REMARK 465 ARG U 83 REMARK 465 ALA U 84 REMARK 465 VAL U 85 REMARK 465 THR U 86 REMARK 465 TYR U 87 REMARK 465 SER U 88 REMARK 465 ARG U 89 REMARK 465 SER U 90 REMARK 465 ILE U 130 REMARK 465 GLN U 131 REMARK 465 GLU U 132 REMARK 465 GLY U 133 REMARK 465 GLU U 134 REMARK 465 GLU U 135 REMARK 465 GLY U 136 REMARK 465 ARG U 137 REMARK 465 PRO U 138 REMARK 465 LYS U 139 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG ASN U 200 C1 NAG U 503 2.01 REMARK 500 ND2 ASN U 200 O5 NAG U 503 2.08 REMARK 500 OD1 ASN U 200 C1 NAG U 503 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS U 160 CG HIS U 160 CD2 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG U 13 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 CYS U 176 CA - CB - SG ANGL. DEV. = -15.5 DEGREES REMARK 500 ARG U 239 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 VAL U 263 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU U 34 70.48 26.21 REMARK 500 GLU U 49 66.81 75.25 REMARK 500 TYR U 92 -156.36 -141.16 REMARK 500 ASN U 161 -156.64 -134.25 REMARK 500 LYS U 175 20.65 46.53 REMARK 500 CYS U 197 164.59 179.40 REMARK 500 HIS U 260 67.41 63.29 REMARK 500 ARG U 281 30.96 28.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FAT RELATED DB: PDB REMARK 900 RELATED ID: 3BT1 RELATED DB: PDB REMARK 900 RELATED ID: 3BT2 RELATED DB: PDB DBREF 3U74 U 1 283 UNP Q03405 UPAR_HUMAN 23 305 SEQADV 3U74 CYS U 47 UNP Q03405 HIS 69 ENGINEERED MUTATION SEQADV 3U74 CYS U 259 UNP Q03405 ASN 281 ENGINEERED MUTATION SEQRES 1 U 283 LEU ARG CYS MET GLN CYS LYS THR ASN GLY ASP CYS ARG SEQRES 2 U 283 VAL GLU GLU CYS ALA LEU GLY GLN ASP LEU CYS ARG THR SEQRES 3 U 283 THR ILE VAL ARG LEU TRP GLU GLU GLY GLU GLU LEU GLU SEQRES 4 U 283 LEU VAL GLU LYS SER CYS THR CYS SER GLU LYS THR ASN SEQRES 5 U 283 ARG THR LEU SER TYR ARG THR GLY LEU LYS ILE THR SER SEQRES 6 U 283 LEU THR GLU VAL VAL CYS GLY LEU ASP LEU CYS ASN GLN SEQRES 7 U 283 GLY ASN SER GLY ARG ALA VAL THR TYR SER ARG SER ARG SEQRES 8 U 283 TYR LEU GLU CYS ILE SER CYS GLY SER SER ASP MET SER SEQRES 9 U 283 CYS GLU ARG GLY ARG HIS GLN SER LEU GLN CYS ARG SER SEQRES 10 U 283 PRO GLU GLU GLN CYS LEU ASP VAL VAL THR HIS TRP ILE SEQRES 11 U 283 GLN GLU GLY GLU GLU GLY ARG PRO LYS ASP ASP ARG HIS SEQRES 12 U 283 LEU ARG GLY CYS GLY TYR LEU PRO GLY CYS PRO GLY SER SEQRES 13 U 283 ASN GLY PHE HIS ASN ASN ASP THR PHE HIS PHE LEU LYS SEQRES 14 U 283 CYS CYS ASN THR THR LYS CYS ASN GLU GLY PRO ILE LEU SEQRES 15 U 283 GLU LEU GLU ASN LEU PRO GLN ASN GLY ARG GLN CYS TYR SEQRES 16 U 283 SER CYS LYS GLY ASN SER THR HIS GLY CYS SER SER GLU SEQRES 17 U 283 GLU THR PHE LEU ILE ASP CYS ARG GLY PRO MET ASN GLN SEQRES 18 U 283 CYS LEU VAL ALA THR GLY THR HIS GLU PRO LYS ASN GLN SEQRES 19 U 283 SER TYR MET VAL ARG GLY CYS ALA THR ALA SER MET CYS SEQRES 20 U 283 GLN HIS ALA HIS LEU GLY ASP ALA PHE SER MET CYS HIS SEQRES 21 U 283 ILE ASP VAL SER CYS CYS THR LYS SER GLY CYS ASN HIS SEQRES 22 U 283 PRO ASP LEU ASP VAL GLN TYR ARG SER GLY MODRES 3U74 ASN U 200 ASN GLYCOSYLATION SITE MODRES 3U74 ASN U 52 ASN GLYCOSYLATION SITE HET NAG A 1 14 HET NAG A 2 14 HET NAG U 503 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 4 HOH *22(H2 O) HELIX 1 1 MET U 103 GLY U 108 1 6 HELIX 2 2 GLU U 183 LEU U 187 5 5 HELIX 3 3 SER U 206 THR U 210 5 5 HELIX 4 4 ALA U 244 CYS U 247 5 4 HELIX 5 5 GLN U 248 SER U 257 1 10 HELIX 6 6 HIS U 273 ASP U 277 5 5 SHEET 1 A 2 ARG U 2 CYS U 6 0 SHEET 2 A 2 CYS U 12 GLU U 16 -1 O GLU U 15 N CYS U 3 SHEET 1 B11 GLU U 36 THR U 46 0 SHEET 2 B11 LEU U 23 GLU U 33 -1 N LEU U 23 O THR U 46 SHEET 3 B11 LYS U 62 CYS U 71 -1 O CYS U 71 N CYS U 24 SHEET 4 B11 ARG U 53 THR U 59 -1 N LEU U 55 O LEU U 66 SHEET 5 B11 ARG U 142 TYR U 149 -1 O CYS U 147 N SER U 56 SHEET 6 B11 GLN U 121 HIS U 128 -1 N GLN U 121 O GLY U 148 SHEET 7 B11 PHE U 165 CYS U 171 -1 O PHE U 167 N VAL U 126 SHEET 8 B11 GLY U 155 HIS U 160 -1 N GLY U 155 O CYS U 170 SHEET 9 B11 SER U 235 ALA U 242 -1 O CYS U 241 N HIS U 160 SHEET 10 B11 GLN U 189 GLY U 199 -1 N CYS U 197 O ARG U 239 SHEET 11 B11 PHE U 211 ARG U 216 -1 O CYS U 215 N ARG U 192 SHEET 1 C11 GLU U 36 THR U 46 0 SHEET 2 C11 LEU U 23 GLU U 33 -1 N LEU U 23 O THR U 46 SHEET 3 C11 LYS U 62 CYS U 71 -1 O CYS U 71 N CYS U 24 SHEET 4 C11 ARG U 53 THR U 59 -1 N LEU U 55 O LEU U 66 SHEET 5 C11 ARG U 142 TYR U 149 -1 O CYS U 147 N SER U 56 SHEET 6 C11 GLN U 121 HIS U 128 -1 N GLN U 121 O GLY U 148 SHEET 7 C11 PHE U 165 CYS U 171 -1 O PHE U 167 N VAL U 126 SHEET 8 C11 GLY U 155 HIS U 160 -1 N GLY U 155 O CYS U 170 SHEET 9 C11 SER U 235 ALA U 242 -1 O CYS U 241 N HIS U 160 SHEET 10 C11 GLN U 221 HIS U 229 -1 N LEU U 223 O GLY U 240 SHEET 11 C11 MET U 258 CYS U 266 -1 O ASP U 262 N THR U 226 SHEET 1 D 2 GLU U 94 SER U 97 0 SHEET 2 D 2 GLN U 111 GLN U 114 -1 O LEU U 113 N CYS U 95 SSBOND 1 CYS U 3 CYS U 24 1555 1555 1.96 SSBOND 2 CYS U 6 CYS U 12 1555 1555 1.96 SSBOND 3 CYS U 17 CYS U 45 1555 1555 2.06 SSBOND 4 CYS U 47 CYS U 259 1555 1555 1.97 SSBOND 5 CYS U 71 CYS U 76 1555 1555 2.02 SSBOND 6 CYS U 95 CYS U 122 1555 1555 2.04 SSBOND 7 CYS U 98 CYS U 105 1555 1555 2.08 SSBOND 8 CYS U 115 CYS U 147 1555 1555 2.03 SSBOND 9 CYS U 153 CYS U 170 1555 1555 1.99 SSBOND 10 CYS U 171 CYS U 176 1555 1555 1.92 SSBOND 11 CYS U 194 CYS U 222 1555 1555 2.03 SSBOND 12 CYS U 197 CYS U 205 1555 1555 2.09 SSBOND 13 CYS U 215 CYS U 241 1555 1555 1.99 SSBOND 14 CYS U 247 CYS U 265 1555 1555 2.02 SSBOND 15 CYS U 266 CYS U 271 1555 1555 1.98 LINK ND2 ASN U 52 C1 NAG A 1 1555 1555 1.49 LINK ND2 ASN U 200 C1 NAG U 503 1555 1555 1.49 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.43 CISPEP 1 CYS U 153 PRO U 154 0 -8.33 CISPEP 2 SER U 282 GLY U 283 0 0.51 CRYST1 111.235 111.235 78.571 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008990 0.005190 0.000000 0.00000 SCALE2 0.000000 0.010381 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012727 0.00000