PDB Short entry for 3UMO HEADER TRANSFERASE 14-NOV-11 3UMO TITLE CRYSTAL STRUCTURE OF THE PHOSPHOFRUCTOKINASE-2 FROM ESCHERICHIA COLI TITLE 2 IN COMPLEX WITH POTASSIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6-PHOSPHOFRUCTOKINASE ISOZYME 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHOSPHOFRUCTOKINASE-2; COMPND 5 EC: 2.7.1.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B1723, JW5280, PFK2, PFKB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21-D KEYWDS GLYCOLYSIS, TRANSFERASE, PFK, ENZYME EXPDTA X-RAY DIFFRACTION AUTHOR H.M.PEREIRA,A.CANIUGUIR,M.BAEZ,R.CABRERA,R.C.GARRATT,J.BABUL REVDAT 3 13-SEP-23 3UMO 1 REMARK LINK REVDAT 2 24-JUL-13 3UMO 1 JRNL REVDAT 1 14-NOV-12 3UMO 0 JRNL AUTH M.BAEZ,R.CABRERA,H.M.PEREIRA,A.BLANCO,P.VILLALOBOS, JRNL AUTH 2 C.A.RAMIREZ-SARMIENTO,A.CANIUGUIR,V.GUIXE,R.C.GARRATT, JRNL AUTH 3 J.BABUL JRNL TITL A RIBOKINASE FAMILY CONSERVED MONOVALENT CATION BINDING SITE JRNL TITL 2 ENHANCES THE MGATP-INDUCED INHIBITION IN E. COLI JRNL TITL 3 PHOSPHOFRUCTOKINASE-2 JRNL REF BIOPHYS.J. V. 105 185 2013 JRNL REFN ISSN 0006-3495 JRNL PMID 23823238 JRNL DOI 10.1016/J.BPJ.2013.05.028 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 76249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9875 - 5.0867 0.98 2915 154 0.1761 0.1886 REMARK 3 2 5.0867 - 4.0381 0.98 2730 144 0.1383 0.1446 REMARK 3 3 4.0381 - 3.5278 0.98 2749 144 0.1596 0.1837 REMARK 3 4 3.5278 - 3.2053 0.98 2720 144 0.1831 0.2039 REMARK 3 5 3.2053 - 2.9756 0.98 2696 141 0.1864 0.2251 REMARK 3 6 2.9756 - 2.8002 0.98 2688 142 0.1794 0.2176 REMARK 3 7 2.8002 - 2.6600 0.99 2687 141 0.1829 0.2217 REMARK 3 8 2.6600 - 2.5442 0.99 2680 141 0.1742 0.2189 REMARK 3 9 2.5442 - 2.4463 0.99 2663 140 0.1764 0.2088 REMARK 3 10 2.4463 - 2.3619 0.99 2706 143 0.1771 0.2134 REMARK 3 11 2.3619 - 2.2880 0.99 2668 140 0.1787 0.2088 REMARK 3 12 2.2880 - 2.2226 0.98 2670 141 0.1803 0.2453 REMARK 3 13 2.2226 - 2.1641 0.99 2658 140 0.1760 0.2080 REMARK 3 14 2.1641 - 2.1113 0.99 2647 139 0.1736 0.2001 REMARK 3 15 2.1113 - 2.0633 0.99 2679 141 0.1868 0.2002 REMARK 3 16 2.0633 - 2.0194 1.00 2683 141 0.1866 0.2127 REMARK 3 17 2.0194 - 1.9790 1.00 2659 140 0.1961 0.2285 REMARK 3 18 1.9790 - 1.9416 1.00 2705 143 0.1988 0.2294 REMARK 3 19 1.9416 - 1.9070 1.00 2639 139 0.2010 0.2397 REMARK 3 20 1.9070 - 1.8746 1.00 2744 144 0.2246 0.2297 REMARK 3 21 1.8746 - 1.8444 0.99 2637 139 0.2399 0.2784 REMARK 3 22 1.8444 - 1.8160 1.00 2656 140 0.2584 0.2982 REMARK 3 23 1.8160 - 1.7893 1.00 2701 142 0.2648 0.2947 REMARK 3 24 1.7893 - 1.7641 1.00 2639 139 0.2716 0.2931 REMARK 3 25 1.7641 - 1.7403 1.00 2646 139 0.2791 0.3005 REMARK 3 26 1.7403 - 1.7177 1.00 2717 143 0.2979 0.3697 REMARK 3 27 1.7177 - 1.6960 0.93 2454 129 0.3052 0.3374 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 29.31 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.81260 REMARK 3 B22 (A**2) : 2.05550 REMARK 3 B33 (A**2) : -0.24290 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4826 REMARK 3 ANGLE : 1.297 6606 REMARK 3 CHIRALITY : 0.064 776 REMARK 3 PLANARITY : 0.004 838 REMARK 3 DIHEDRAL : 20.150 1794 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UMO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068945. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97627 REMARK 200 MONOCHROMATOR : SI(311) AND SI(111) REMARK 200 OPTICS : DCM SI(311) AND SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76251 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.696 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, DM REMARK 200 STARTING MODEL: 3CQD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG 4000, 0.1 M SODIUM ACETATE PH REMARK 280 4.75, 0.2 M AMMONIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.06000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.06000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 368 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 504 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 640 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 290 CG CD OE1 NE2 REMARK 470 ARG B 309 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 371 O HOH A 631 2.05 REMARK 500 O HOH A 425 O HOH A 631 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 25 -55.42 77.25 REMARK 500 GLU B 25 -52.36 76.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 314 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 250 O REMARK 620 2 VAL A 252 O 87.1 REMARK 620 3 ALA A 286 O 75.9 99.1 REMARK 620 4 ASN A 289 O 80.3 167.5 77.9 REMARK 620 5 GLY A 291 O 105.0 89.2 171.6 94.0 REMARK 620 6 ARG A 293 O 150.9 82.9 78.8 108.2 102.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 310 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 313 O2B REMARK 620 2 ATP A 313 O1G 93.0 REMARK 620 3 HOH A 532 O 177.4 89.4 REMARK 620 4 HOH A 533 O 85.0 175.9 92.7 REMARK 620 5 HOH A 535 O 96.8 87.9 84.3 88.8 REMARK 620 6 HOH B 534 O 92.8 94.4 86.0 89.3 170.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 311 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 313 O1B REMARK 620 2 ATP A 313 O3G 98.0 REMARK 620 3 HOH A 686 O 89.2 86.5 REMARK 620 4 ATP B 312 O3G 93.4 96.1 176.0 REMARK 620 5 ATP B 312 O1G 91.2 96.1 177.4 2.2 REMARK 620 6 ATP B 312 O1B 175.1 86.8 92.0 85.2 87.4 REMARK 620 7 ATP B 312 O2B 177.4 84.2 89.5 87.8 90.0 3.5 REMARK 620 8 HOH B 531 O 85.0 169.6 83.6 93.6 93.8 90.4 92.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 312 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 315 O3G REMARK 620 2 ATP A 315 O1B 84.4 REMARK 620 3 ATP A 315 O1G 1.8 85.3 REMARK 620 4 ATP A 315 O2B 91.4 7.3 92.3 REMARK 620 5 HOH A 536 O 91.3 92.4 92.9 90.1 REMARK 620 6 ATP B 313 O1B 92.0 175.1 91.3 173.5 84.3 REMARK 620 7 ATP B 313 O3G 94.1 89.5 92.5 91.2 174.4 94.1 REMARK 620 8 HOH B 669 O 176.9 97.8 176.9 90.8 86.4 85.6 88.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 311 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 339 O REMARK 620 2 HOH B 310 O 86.1 REMARK 620 3 ATP B 313 O2B 92.0 84.6 REMARK 620 4 ATP B 313 O1G 97.2 176.6 95.8 REMARK 620 5 HOH B 318 O 168.2 88.9 98.1 87.8 REMARK 620 6 HOH B 342 O 86.6 92.1 176.5 87.5 82.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 314 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 250 O REMARK 620 2 VAL B 252 O 88.0 REMARK 620 3 ALA B 286 O 74.0 101.4 REMARK 620 4 ASN B 289 O 80.8 167.6 80.8 REMARK 620 5 GLY B 291 O 104.7 89.9 168.6 87.7 REMARK 620 6 ARG B 293 O 151.4 84.9 80.3 107.5 103.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 314 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CQD RELATED DB: PDB REMARK 900 RELATED ID: 3UMP RELATED DB: PDB DBREF 3UMO A 1 309 UNP P06999 K6PF2_ECOLI 1 309 DBREF 3UMO B 1 309 UNP P06999 K6PF2_ECOLI 1 309 SEQRES 1 A 309 MET VAL ARG ILE TYR THR LEU THR LEU ALA PRO SER LEU SEQRES 2 A 309 ASP SER ALA THR ILE THR PRO GLN ILE TYR PRO GLU GLY SEQRES 3 A 309 LYS LEU ARG CYS THR ALA PRO VAL PHE GLU PRO GLY GLY SEQRES 4 A 309 GLY GLY ILE ASN VAL ALA ARG ALA ILE ALA HIS LEU GLY SEQRES 5 A 309 GLY SER ALA THR ALA ILE PHE PRO ALA GLY GLY ALA THR SEQRES 6 A 309 GLY GLU HIS LEU VAL SER LEU LEU ALA ASP GLU ASN VAL SEQRES 7 A 309 PRO VAL ALA THR VAL GLU ALA LYS ASP TRP THR ARG GLN SEQRES 8 A 309 ASN LEU HIS VAL HIS VAL GLU ALA SER GLY GLU GLN TYR SEQRES 9 A 309 ARG PHE VAL MET PRO GLY ALA ALA LEU ASN GLU ASP GLU SEQRES 10 A 309 PHE ARG GLN LEU GLU GLU GLN VAL LEU GLU ILE GLU SER SEQRES 11 A 309 GLY ALA ILE LEU VAL ILE SER GLY SER LEU PRO PRO GLY SEQRES 12 A 309 VAL LYS LEU GLU LYS LEU THR GLN LEU ILE SER ALA ALA SEQRES 13 A 309 GLN LYS GLN GLY ILE ARG CYS ILE VAL ASP SER SER GLY SEQRES 14 A 309 GLU ALA LEU SER ALA ALA LEU ALA ILE GLY ASN ILE GLU SEQRES 15 A 309 LEU VAL LYS PRO ASN GLN LYS GLU LEU SER ALA LEU VAL SEQRES 16 A 309 ASN ARG GLU LEU THR GLN PRO ASP ASP VAL ARG LYS ALA SEQRES 17 A 309 ALA GLN GLU ILE VAL ASN SER GLY LYS ALA LYS ARG VAL SEQRES 18 A 309 VAL VAL SER LEU GLY PRO GLN GLY ALA LEU GLY VAL ASP SEQRES 19 A 309 SER GLU ASN CYS ILE GLN VAL VAL PRO PRO PRO VAL LYS SEQRES 20 A 309 SER GLN SER THR VAL GLY ALA GLY ASP SER MET VAL GLY SEQRES 21 A 309 ALA MET THR LEU LYS LEU ALA GLU ASN ALA SER LEU GLU SEQRES 22 A 309 GLU MET VAL ARG PHE GLY VAL ALA ALA GLY SER ALA ALA SEQRES 23 A 309 THR LEU ASN GLN GLY THR ARG LEU CYS SER HIS ASP ASP SEQRES 24 A 309 THR GLN LYS ILE TYR ALA TYR LEU SER ARG SEQRES 1 B 309 MET VAL ARG ILE TYR THR LEU THR LEU ALA PRO SER LEU SEQRES 2 B 309 ASP SER ALA THR ILE THR PRO GLN ILE TYR PRO GLU GLY SEQRES 3 B 309 LYS LEU ARG CYS THR ALA PRO VAL PHE GLU PRO GLY GLY SEQRES 4 B 309 GLY GLY ILE ASN VAL ALA ARG ALA ILE ALA HIS LEU GLY SEQRES 5 B 309 GLY SER ALA THR ALA ILE PHE PRO ALA GLY GLY ALA THR SEQRES 6 B 309 GLY GLU HIS LEU VAL SER LEU LEU ALA ASP GLU ASN VAL SEQRES 7 B 309 PRO VAL ALA THR VAL GLU ALA LYS ASP TRP THR ARG GLN SEQRES 8 B 309 ASN LEU HIS VAL HIS VAL GLU ALA SER GLY GLU GLN TYR SEQRES 9 B 309 ARG PHE VAL MET PRO GLY ALA ALA LEU ASN GLU ASP GLU SEQRES 10 B 309 PHE ARG GLN LEU GLU GLU GLN VAL LEU GLU ILE GLU SER SEQRES 11 B 309 GLY ALA ILE LEU VAL ILE SER GLY SER LEU PRO PRO GLY SEQRES 12 B 309 VAL LYS LEU GLU LYS LEU THR GLN LEU ILE SER ALA ALA SEQRES 13 B 309 GLN LYS GLN GLY ILE ARG CYS ILE VAL ASP SER SER GLY SEQRES 14 B 309 GLU ALA LEU SER ALA ALA LEU ALA ILE GLY ASN ILE GLU SEQRES 15 B 309 LEU VAL LYS PRO ASN GLN LYS GLU LEU SER ALA LEU VAL SEQRES 16 B 309 ASN ARG GLU LEU THR GLN PRO ASP ASP VAL ARG LYS ALA SEQRES 17 B 309 ALA GLN GLU ILE VAL ASN SER GLY LYS ALA LYS ARG VAL SEQRES 18 B 309 VAL VAL SER LEU GLY PRO GLN GLY ALA LEU GLY VAL ASP SEQRES 19 B 309 SER GLU ASN CYS ILE GLN VAL VAL PRO PRO PRO VAL LYS SEQRES 20 B 309 SER GLN SER THR VAL GLY ALA GLY ASP SER MET VAL GLY SEQRES 21 B 309 ALA MET THR LEU LYS LEU ALA GLU ASN ALA SER LEU GLU SEQRES 22 B 309 GLU MET VAL ARG PHE GLY VAL ALA ALA GLY SER ALA ALA SEQRES 23 B 309 THR LEU ASN GLN GLY THR ARG LEU CYS SER HIS ASP ASP SEQRES 24 B 309 THR GLN LYS ILE TYR ALA TYR LEU SER ARG HET MG A 310 1 HET MG A 311 1 HET ATP A 313 31 HET K A 314 1 HET MG A 312 1 HET ATP A 315 62 HET ATP B 312 62 HET MG B 311 1 HET ATP B 313 31 HET K B 314 1 HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM K POTASSIUM ION FORMUL 3 MG 4(MG 2+) FORMUL 5 ATP 4(C10 H16 N5 O13 P3) FORMUL 6 K 2(K 1+) FORMUL 13 HOH *568(H2 O) HELIX 1 1 GLY A 39 LEU A 51 1 13 HELIX 2 2 GLY A 62 GLU A 76 1 15 HELIX 3 3 ASN A 114 LEU A 126 1 13 HELIX 4 4 LYS A 145 GLN A 159 1 15 HELIX 5 5 SER A 168 LEU A 176 1 9 HELIX 6 6 ASN A 187 ASN A 196 1 10 HELIX 7 7 ASP A 203 SER A 215 1 13 HELIX 8 8 GLY A 226 GLN A 228 5 3 HELIX 9 9 GLY A 253 GLU A 268 1 16 HELIX 10 10 SER A 271 THR A 287 1 17 HELIX 11 11 SER A 296 SER A 308 1 13 HELIX 12 12 GLY B 39 LEU B 51 1 13 HELIX 13 13 GLY B 62 GLU B 76 1 15 HELIX 14 14 ASN B 114 LEU B 126 1 13 HELIX 15 15 LYS B 145 GLN B 159 1 15 HELIX 16 16 SER B 168 LEU B 176 1 9 HELIX 17 17 ASN B 187 ASN B 196 1 10 HELIX 18 18 ASP B 203 SER B 215 1 13 HELIX 19 19 GLY B 226 GLN B 228 5 3 HELIX 20 20 GLY B 253 GLU B 268 1 16 HELIX 21 21 SER B 271 LEU B 288 1 18 HELIX 22 22 SER B 296 SER B 308 1 13 SHEET 1 A 6 VAL A 80 GLU A 84 0 SHEET 2 A 6 ALA A 55 ALA A 61 1 N ALA A 61 O VAL A 83 SHEET 3 A 6 ILE A 4 LEU A 7 1 N THR A 6 O ILE A 58 SHEET 4 A 6 ILE A 133 SER A 137 1 O VAL A 135 N LEU A 7 SHEET 5 A 6 ARG A 162 ASP A 166 1 O ILE A 164 N ILE A 136 SHEET 6 A 6 LEU A 183 VAL A 184 1 O LEU A 183 N VAL A 165 SHEET 1 B 5 VAL A 34 GLY A 38 0 SHEET 2 B 5 SER A 12 THR A 19 -1 N ALA A 16 O VAL A 34 SHEET 3 B 5 LEU A 93 VAL A 97 1 O HIS A 94 N SER A 15 SHEET 4 B 5 GLN A 103 VAL A 107 -1 O TYR A 104 N VAL A 95 SHEET 5 B 5 LYS B 27 ARG B 29 1 O LEU B 28 N VAL A 107 SHEET 1 C 5 LYS A 27 ARG A 29 0 SHEET 2 C 5 GLN B 103 VAL B 107 1 O VAL B 107 N LEU A 28 SHEET 3 C 5 LEU B 93 VAL B 97 -1 N VAL B 95 O TYR B 104 SHEET 4 C 5 SER B 12 THR B 19 1 N SER B 15 O HIS B 94 SHEET 5 C 5 VAL B 34 GLY B 38 -1 O VAL B 34 N ALA B 16 SHEET 1 D 3 VAL A 221 SER A 224 0 SHEET 2 D 3 ALA A 230 VAL A 233 -1 O LEU A 231 N VAL A 223 SHEET 3 D 3 CYS A 238 VAL A 241 -1 O ILE A 239 N GLY A 232 SHEET 1 E 6 VAL B 80 GLU B 84 0 SHEET 2 E 6 ALA B 55 ALA B 61 1 N ALA B 61 O VAL B 83 SHEET 3 E 6 ILE B 4 LEU B 7 1 N THR B 6 O ILE B 58 SHEET 4 E 6 ILE B 133 SER B 137 1 O VAL B 135 N LEU B 7 SHEET 5 E 6 ARG B 162 ASP B 166 1 O ILE B 164 N ILE B 136 SHEET 6 E 6 LEU B 183 VAL B 184 1 O LEU B 183 N VAL B 165 SHEET 1 F 3 VAL B 221 SER B 224 0 SHEET 2 F 3 ALA B 230 VAL B 233 -1 O VAL B 233 N VAL B 221 SHEET 3 F 3 CYS B 238 VAL B 241 -1 O ILE B 239 N GLY B 232 LINK O SER A 250 K K A 314 1555 1555 3.07 LINK O VAL A 252 K K A 314 1555 1555 2.85 LINK O ALA A 286 K K A 314 1555 1555 2.93 LINK O ASN A 289 K K A 314 1555 1555 2.75 LINK O GLY A 291 K K A 314 1555 1555 2.82 LINK O ARG A 293 K K A 314 1555 1555 2.91 LINK MG MG A 310 O2B ATP A 313 1555 1555 2.05 LINK MG MG A 310 O1G ATP A 313 1555 1555 2.14 LINK MG MG A 310 O HOH A 532 1555 1555 2.17 LINK MG MG A 310 O HOH A 533 1555 1555 2.22 LINK MG MG A 310 O HOH A 535 1555 1555 2.27 LINK MG MG A 310 O HOH B 534 1555 1555 2.28 LINK MG MG A 311 O1B ATP A 313 1555 1555 2.06 LINK MG MG A 311 O3G ATP A 313 1555 1555 2.13 LINK MG MG A 311 O HOH A 686 1555 1555 2.25 LINK MG MG A 311 O3GBATP B 312 1555 1555 2.05 LINK MG MG A 311 O1GAATP B 312 1555 1555 2.16 LINK MG MG A 311 O1BBATP B 312 1555 1555 2.19 LINK MG MG A 311 O2BAATP B 312 1555 1555 2.28 LINK MG MG A 311 O HOH B 531 1555 1555 2.30 LINK MG MG A 312 O3GBATP A 315 1555 1555 2.02 LINK MG MG A 312 O1BBATP A 315 1555 1555 2.10 LINK MG MG A 312 O1GAATP A 315 1555 1555 2.14 LINK MG MG A 312 O2BAATP A 315 1555 1555 2.17 LINK MG MG A 312 O HOH A 536 1555 1555 2.29 LINK MG MG A 312 O1B ATP B 313 1555 1555 2.14 LINK MG MG A 312 O3G ATP B 313 1555 1555 2.17 LINK MG MG A 312 O HOH B 669 1555 1555 2.22 LINK O HOH A 339 MG MG B 311 1555 1555 2.16 LINK O SER B 250 K K B 314 1555 1555 3.11 LINK O VAL B 252 K K B 314 1555 1555 3.21 LINK O ALA B 286 K K B 314 1555 1555 2.94 LINK O ASN B 289 K K B 314 1555 1555 2.80 LINK O GLY B 291 K K B 314 1555 1555 2.87 LINK O ARG B 293 K K B 314 1555 1555 2.95 LINK O HOH B 310 MG MG B 311 1555 1555 2.23 LINK MG MG B 311 O2B ATP B 313 1555 1555 2.01 LINK MG MG B 311 O1G ATP B 313 1555 1555 2.16 LINK MG MG B 311 O HOH B 318 1555 1555 2.30 LINK MG MG B 311 O HOH B 342 1555 1555 2.20 SITE 1 AC1 5 ATP A 313 HOH A 532 HOH A 533 HOH A 535 SITE 2 AC1 5 HOH B 534 SITE 1 AC2 4 ATP A 313 HOH A 686 ATP B 312 HOH B 531 SITE 1 AC3 31 LYS A 185 ASN A 187 SER A 224 LEU A 225 SITE 2 AC3 31 GLY A 226 PRO A 227 GLY A 229 THR A 251 SITE 3 AC3 31 ALA A 254 GLY A 255 MET A 258 VAL A 280 SITE 4 AC3 31 GLY A 283 SER A 284 THR A 287 MG A 310 SITE 5 AC3 31 MG A 311 HOH A 320 HOH A 323 HOH A 326 SITE 6 AC3 31 HOH A 360 HOH A 516 HOH A 518 HOH A 532 SITE 7 AC3 31 HOH A 533 HOH A 535 HOH A 649 HOH A 686 SITE 8 AC3 31 LYS B 27 ATP B 312 HOH B 531 SITE 1 AC4 6 SER A 250 VAL A 252 ALA A 286 ASN A 289 SITE 2 AC4 6 GLY A 291 ARG A 293 SITE 1 AC5 4 ATP A 315 HOH A 536 ATP B 313 HOH B 669 SITE 1 AC6 22 TYR A 23 PRO A 24 GLY A 26 LYS A 27 SITE 2 AC6 22 GLU A 102 MG A 312 HOH A 339 HOH A 344 SITE 3 AC6 22 HOH A 348 HOH A 382 HOH A 437 HOH A 514 SITE 4 AC6 22 HOH A 529 HOH A 536 HOH A 682 ASN B 187 SITE 5 AC6 22 LYS B 189 GLY B 226 PRO B 227 THR B 251 SITE 6 AC6 22 ATP B 313 HOH B 452 SITE 1 AC7 23 ASN A 187 LYS A 189 GLY A 226 THR A 251 SITE 2 AC7 23 MG A 311 ATP A 313 HOH A 358 HOH A 547 SITE 3 AC7 23 TYR B 23 GLY B 26 LYS B 27 GLU B 102 SITE 4 AC7 23 HOH B 386 HOH B 418 HOH B 423 HOH B 434 SITE 5 AC7 23 HOH B 463 HOH B 480 HOH B 508 HOH B 531 SITE 6 AC7 23 HOH B 534 HOH B 582 HOH B 591 SITE 1 AC8 5 HOH A 339 HOH B 310 ATP B 313 HOH B 318 SITE 2 AC8 5 HOH B 342 SITE 1 AC9 31 LYS A 27 MG A 312 ATP A 315 HOH A 339 SITE 2 AC9 31 HOH A 536 LYS B 185 ASN B 187 SER B 224 SITE 3 AC9 31 LEU B 225 GLY B 226 PRO B 227 GLY B 229 SITE 4 AC9 31 ALA B 254 GLY B 255 MET B 258 VAL B 280 SITE 5 AC9 31 GLY B 283 SER B 284 THR B 287 HOH B 310 SITE 6 AC9 31 MG B 311 HOH B 318 HOH B 325 HOH B 342 SITE 7 AC9 31 HOH B 344 HOH B 352 HOH B 412 HOH B 441 SITE 8 AC9 31 HOH B 548 HOH B 557 HOH B 669 SITE 1 BC1 6 SER B 250 VAL B 252 ALA B 286 ASN B 289 SITE 2 BC1 6 GLY B 291 ARG B 293 CRYST1 43.812 88.770 176.120 90.00 90.00 90.00 P 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022825 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011265 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005678 0.00000