PDB Short entry for 3UWU HEADER ISOMERASE 03-DEC-11 3UWU TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS TRIOSEPHOSPHATE ISOMERASE TITLE 2 COMPLEXED WITH GLYCEROL-3-PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TIM, TRIOSE-PHOSPHATE ISOMERASE; COMPND 5 EC: 5.3.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 282458; SOURCE 4 STRAIN: MRSA252; SOURCE 5 GENE: SAR0830, TPI, TPIA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M15 (PREP4); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS TIM BARREL, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MUKHERJEE,A.ROYCHOWDHURY,D.DUTTA,A.K.DAS REVDAT 3 08-NOV-23 3UWU 1 REMARK SEQADV REVDAT 2 26-JUN-13 3UWU 1 JRNL REVDAT 1 17-OCT-12 3UWU 0 JRNL AUTH S.MUKHERJEE,A.ROYCHOWDHURY,D.DUTTA,A.K.DAS JRNL TITL CRYSTAL STRUCTURES OF TRIOSEPHOSPHATE ISOMERASE FROM JRNL TITL 2 METHICILLIN RESISTANT STAPHYLOCOCCUS AUREUS MRSA252 PROVIDE JRNL TITL 3 STRUCTURAL INSIGHTS INTO NOVEL MODES OF LIGAND BINDING AND JRNL TITL 4 UNIQUE CONFORMATIONS OF CATALYTIC LOOP JRNL REF BIOCHIMIE V. 94 2532 2012 JRNL REFN ISSN 0300-9084 JRNL PMID 22813930 JRNL DOI 10.1016/J.BIOCHI.2012.07.001 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0095 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 32120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1628 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1898 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3815 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 376 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.17000 REMARK 3 B22 (A**2) : 1.17000 REMARK 3 B33 (A**2) : -2.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.182 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.495 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3923 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5311 ; 1.089 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 511 ; 5.088 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 171 ;35.983 ;26.491 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 696 ;12.972 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;14.757 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 611 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2922 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2509 ; 0.424 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4036 ; 0.881 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1414 ; 2.727 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1271 ; 4.678 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 11 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 33 2 REMARK 3 1 B 3 B 33 2 REMARK 3 2 A 35 A 70 2 REMARK 3 2 B 35 B 70 2 REMARK 3 3 A 73 A 106 2 REMARK 3 3 B 73 B 106 2 REMARK 3 4 A 111 A 119 2 REMARK 3 4 B 111 B 119 2 REMARK 3 5 A 121 A 132 2 REMARK 3 5 B 121 B 132 2 REMARK 3 6 A 139 A 157 2 REMARK 3 6 B 139 B 157 2 REMARK 3 7 A 160 A 185 2 REMARK 3 7 B 160 B 185 2 REMARK 3 8 A 189 A 201 2 REMARK 3 8 B 189 B 201 2 REMARK 3 9 A 205 A 215 2 REMARK 3 9 B 205 B 215 2 REMARK 3 10 A 217 A 241 2 REMARK 3 10 B 217 B 241 2 REMARK 3 11 A 244 A 249 2 REMARK 3 11 B 244 B 249 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 885 ; 0.040 ; 0.050 REMARK 3 MEDIUM POSITIONAL 1 A (A): 757 ; 0.040 ; 0.500 REMARK 3 TIGHT THERMAL 1 A (A**2): 885 ; 0.290 ; 1.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 757 ; 0.480 ; 2.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 253 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3683 20.2640 17.0752 REMARK 3 T TENSOR REMARK 3 T11: 0.0113 T22: 0.0523 REMARK 3 T33: 0.0475 T12: -0.0022 REMARK 3 T13: 0.0059 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.7605 L22: 0.7153 REMARK 3 L33: 1.2198 L12: -0.1969 REMARK 3 L13: 0.0083 L23: -0.1637 REMARK 3 S TENSOR REMARK 3 S11: 0.0423 S12: -0.1064 S13: -0.0278 REMARK 3 S21: 0.0242 S22: -0.0347 S23: -0.0547 REMARK 3 S31: 0.0536 S32: 0.1329 S33: -0.0076 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 252 REMARK 3 ORIGIN FOR THE GROUP (A): -15.8070 28.1051 -7.9621 REMARK 3 T TENSOR REMARK 3 T11: 0.0439 T22: 0.0656 REMARK 3 T33: 0.0481 T12: 0.0138 REMARK 3 T13: 0.0016 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.1646 L22: 0.8460 REMARK 3 L33: 1.1985 L12: 0.2091 REMARK 3 L13: -0.2120 L23: -0.0937 REMARK 3 S TENSOR REMARK 3 S11: 0.0234 S12: 0.1505 S13: 0.0283 REMARK 3 S21: -0.1614 S22: 0.0272 S23: 0.0827 REMARK 3 S31: -0.0098 S32: -0.1929 S33: -0.0505 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UWU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069308. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32236 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.149 REMARK 200 RESOLUTION RANGE LOW (A) : 73.553 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : 0.43900 REMARK 200 R SYM FOR SHELL (I) : 0.43900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3M9Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M TRI-SODIUM CITRATE, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.30000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.55000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 130.95000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.55000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.65000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.55000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.55000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 130.95000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.55000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.55000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.65000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 87.30000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 LYS B 253 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 73 O HOH B 396 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN B 247 O HOH A 295 3554 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 11 -144.70 49.29 REMARK 500 LYS A 14 140.42 86.34 REMARK 500 SER A 200 -103.75 -138.51 REMARK 500 LYS B 11 -147.00 50.46 REMARK 500 LYS B 14 138.99 87.73 REMARK 500 SER B 200 -102.08 -137.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G3P A 254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 255 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G3P B 254 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UWV RELATED DB: PDB REMARK 900 RELATED ID: 3UWW RELATED DB: PDB REMARK 900 RELATED ID: 3UWY RELATED DB: PDB REMARK 900 RELATED ID: 3UWZ RELATED DB: PDB REMARK 900 RELATED ID: 3M9Y RELATED DB: PDB DBREF 3UWU A 1 253 UNP Q6GIL6 TPIS_STAAR 1 253 DBREF 3UWU B 1 253 UNP Q6GIL6 TPIS_STAAR 1 253 SEQADV 3UWU HIS A -7 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWU HIS A -6 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWU HIS A -5 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWU HIS A -4 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWU HIS A -3 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWU HIS A -2 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWU GLY A -1 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWU SER A 0 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWU HIS B -7 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWU HIS B -6 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWU HIS B -5 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWU HIS B -4 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWU HIS B -3 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWU HIS B -2 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWU GLY B -1 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWU SER B 0 UNP Q6GIL6 EXPRESSION TAG SEQRES 1 A 261 HIS HIS HIS HIS HIS HIS GLY SER MET ARG THR PRO ILE SEQRES 2 A 261 ILE ALA GLY ASN TRP LYS MET ASN LYS THR VAL GLN GLU SEQRES 3 A 261 ALA LYS ASP PHE VAL ASN ALA LEU PRO THR LEU PRO ASP SEQRES 4 A 261 SER LYS GLU VAL GLU SER VAL ILE CYS ALA PRO ALA ILE SEQRES 5 A 261 GLN LEU ASP ALA LEU THR THR ALA VAL LYS GLU GLY LYS SEQRES 6 A 261 ALA GLN GLY LEU GLU ILE GLY ALA GLN ASN THR TYR PHE SEQRES 7 A 261 GLU ASP ASN GLY ALA PHE THR GLY GLU THR SER PRO VAL SEQRES 8 A 261 ALA LEU ALA ASP LEU GLY VAL LYS TYR VAL VAL ILE GLY SEQRES 9 A 261 HIS SER GLU ARG ARG GLU LEU PHE HIS GLU THR ASP GLU SEQRES 10 A 261 GLU ILE ASN LYS LYS ALA HIS ALA ILE PHE LYS HIS GLY SEQRES 11 A 261 MET THR PRO ILE ILE CYS VAL GLY GLU THR ASP GLU GLU SEQRES 12 A 261 ARG GLU SER GLY LYS ALA ASN ASP VAL VAL GLY GLU GLN SEQRES 13 A 261 VAL LYS LYS ALA VAL ALA GLY LEU SER GLU ASP GLN LEU SEQRES 14 A 261 LYS SER VAL VAL ILE ALA TYR GLU PRO ILE TRP ALA ILE SEQRES 15 A 261 GLY THR GLY LYS SER SER THR SER GLU ASP ALA ASN GLU SEQRES 16 A 261 MET CYS ALA PHE VAL ARG GLN THR ILE ALA ASP LEU SER SEQRES 17 A 261 SER LYS GLU VAL SER GLU ALA THR ARG ILE GLN TYR GLY SEQRES 18 A 261 GLY SER VAL LYS PRO ASN ASN ILE LYS GLU TYR MET ALA SEQRES 19 A 261 GLN THR ASP ILE ASP GLY ALA LEU VAL GLY GLY ALA SER SEQRES 20 A 261 LEU LYS VAL GLU ASP PHE VAL GLN LEU LEU GLU GLY ALA SEQRES 21 A 261 LYS SEQRES 1 B 261 HIS HIS HIS HIS HIS HIS GLY SER MET ARG THR PRO ILE SEQRES 2 B 261 ILE ALA GLY ASN TRP LYS MET ASN LYS THR VAL GLN GLU SEQRES 3 B 261 ALA LYS ASP PHE VAL ASN ALA LEU PRO THR LEU PRO ASP SEQRES 4 B 261 SER LYS GLU VAL GLU SER VAL ILE CYS ALA PRO ALA ILE SEQRES 5 B 261 GLN LEU ASP ALA LEU THR THR ALA VAL LYS GLU GLY LYS SEQRES 6 B 261 ALA GLN GLY LEU GLU ILE GLY ALA GLN ASN THR TYR PHE SEQRES 7 B 261 GLU ASP ASN GLY ALA PHE THR GLY GLU THR SER PRO VAL SEQRES 8 B 261 ALA LEU ALA ASP LEU GLY VAL LYS TYR VAL VAL ILE GLY SEQRES 9 B 261 HIS SER GLU ARG ARG GLU LEU PHE HIS GLU THR ASP GLU SEQRES 10 B 261 GLU ILE ASN LYS LYS ALA HIS ALA ILE PHE LYS HIS GLY SEQRES 11 B 261 MET THR PRO ILE ILE CYS VAL GLY GLU THR ASP GLU GLU SEQRES 12 B 261 ARG GLU SER GLY LYS ALA ASN ASP VAL VAL GLY GLU GLN SEQRES 13 B 261 VAL LYS LYS ALA VAL ALA GLY LEU SER GLU ASP GLN LEU SEQRES 14 B 261 LYS SER VAL VAL ILE ALA TYR GLU PRO ILE TRP ALA ILE SEQRES 15 B 261 GLY THR GLY LYS SER SER THR SER GLU ASP ALA ASN GLU SEQRES 16 B 261 MET CYS ALA PHE VAL ARG GLN THR ILE ALA ASP LEU SER SEQRES 17 B 261 SER LYS GLU VAL SER GLU ALA THR ARG ILE GLN TYR GLY SEQRES 18 B 261 GLY SER VAL LYS PRO ASN ASN ILE LYS GLU TYR MET ALA SEQRES 19 B 261 GLN THR ASP ILE ASP GLY ALA LEU VAL GLY GLY ALA SER SEQRES 20 B 261 LEU LYS VAL GLU ASP PHE VAL GLN LEU LEU GLU GLY ALA SEQRES 21 B 261 LYS HET G3P A 254 10 HET CIT A 255 13 HET G3P B 254 10 HETNAM G3P SN-GLYCEROL-3-PHOSPHATE HETNAM CIT CITRIC ACID FORMUL 3 G3P 2(C3 H9 O6 P) FORMUL 4 CIT C6 H8 O7 FORMUL 6 HOH *376(H2 O) HELIX 1 1 THR A 15 LEU A 26 1 12 HELIX 2 2 PRO A 42 ILE A 44 5 3 HELIX 3 3 GLN A 45 GLU A 55 1 11 HELIX 4 4 SER A 81 LEU A 88 1 8 HELIX 5 5 HIS A 97 PHE A 104 1 8 HELIX 6 6 THR A 107 HIS A 121 1 15 HELIX 7 7 THR A 132 SER A 138 1 7 HELIX 8 8 LYS A 140 ALA A 154 1 15 HELIX 9 9 SER A 157 VAL A 164 1 8 HELIX 10 10 PRO A 170 ILE A 174 5 5 HELIX 11 11 THR A 181 SER A 200 1 20 HELIX 12 12 SER A 201 GLU A 206 1 6 HELIX 13 13 ASN A 220 ALA A 226 1 7 HELIX 14 14 GLY A 236 LEU A 240 5 5 HELIX 15 15 LYS A 241 GLY A 251 1 11 HELIX 16 16 THR B 15 LEU B 26 1 12 HELIX 17 17 PRO B 42 ILE B 44 5 3 HELIX 18 18 GLN B 45 GLU B 55 1 11 HELIX 19 19 SER B 81 LEU B 88 1 8 HELIX 20 20 HIS B 97 PHE B 104 1 8 HELIX 21 21 THR B 107 HIS B 121 1 15 HELIX 22 22 THR B 132 SER B 138 1 7 HELIX 23 23 LYS B 140 ALA B 154 1 15 HELIX 24 24 SER B 157 VAL B 164 1 8 HELIX 25 25 PRO B 170 ILE B 174 5 5 HELIX 26 26 THR B 181 SER B 200 1 20 HELIX 27 27 SER B 201 GLU B 206 1 6 HELIX 28 28 ASN B 220 GLN B 227 1 8 HELIX 29 29 GLY B 236 LEU B 240 5 5 HELIX 30 30 LYS B 241 GLU B 250 1 10 SHEET 1 A 9 ILE A 5 ASN A 9 0 SHEET 2 A 9 GLU A 36 CYS A 40 1 O CYS A 40 N GLY A 8 SHEET 3 A 9 GLU A 62 ALA A 65 1 O GLY A 64 N ILE A 39 SHEET 4 A 9 TYR A 92 ILE A 95 1 O VAL A 94 N ALA A 65 SHEET 5 A 9 THR A 124 VAL A 129 1 O CYS A 128 N ILE A 95 SHEET 6 A 9 VAL A 165 TYR A 168 1 O VAL A 165 N ILE A 127 SHEET 7 A 9 ARG A 209 TYR A 212 1 O GLN A 211 N ILE A 166 SHEET 8 A 9 GLY A 232 VAL A 235 1 O GLY A 232 N TYR A 212 SHEET 9 A 9 ILE A 5 ASN A 9 1 N ALA A 7 O VAL A 235 SHEET 1 B 9 ILE B 5 ASN B 9 0 SHEET 2 B 9 GLU B 36 CYS B 40 1 O CYS B 40 N GLY B 8 SHEET 3 B 9 GLU B 62 ALA B 65 1 O GLY B 64 N ILE B 39 SHEET 4 B 9 TYR B 92 ILE B 95 1 O TYR B 92 N ALA B 65 SHEET 5 B 9 THR B 124 VAL B 129 1 O ILE B 126 N ILE B 95 SHEET 6 B 9 VAL B 165 TYR B 168 1 O VAL B 165 N ILE B 127 SHEET 7 B 9 ARG B 209 GLY B 213 1 O GLN B 211 N TYR B 168 SHEET 8 B 9 GLY B 232 VAL B 235 1 O GLY B 232 N TYR B 212 SHEET 9 B 9 ILE B 5 ASN B 9 1 N ALA B 7 O VAL B 235 SITE 1 AC1 14 ASN A 9 LYS A 11 HIS A 97 GLU A 169 SITE 2 AC1 14 ILE A 174 GLY A 175 SER A 215 LEU A 234 SITE 3 AC1 14 GLY A 236 GLY A 237 HOH A 356 HOH A 385 SITE 4 AC1 14 HOH A 386 HOH A 389 SITE 1 AC2 8 GLU A 203 GLY A 237 LEU A 240 LYS A 241 SITE 2 AC2 8 ASP A 244 HOH A 398 HOH A 399 HOH A 414 SITE 1 AC3 15 ASN B 9 LYS B 11 HIS B 97 GLU B 169 SITE 2 AC3 15 ILE B 174 GLY B 175 GLY B 214 SER B 215 SITE 3 AC3 15 LEU B 234 GLY B 236 GLY B 237 HOH B 304 SITE 4 AC3 15 HOH B 308 HOH B 317 HOH B 339 CRYST1 81.100 81.100 174.600 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012330 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012330 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005727 0.00000