PDB Short entry for 3UX9 HEADER CYTOKINE/IMMUNE SYSTEM 04-DEC-11 3UX9 TITLE STRUCTURAL INSIGHTS INTO A HUMAN ANTI-IFN ANTIBODY EXERTING TITLE 2 THERAPEUTIC POTENTIAL FOR SYSTEMIC LUPUS ERYTHEMATOSUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON ALPHA-1/13; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: INTERFERON 1B, IFN-ALPHA-1/13, INTERFERON ALPHA-D, LEIF D; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SCFV ANTIBODY; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IFNA1, IFNA13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG 7; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PET-22 KEYWDS FIVE HELICES, LONG LOOP CONNECTING HELIX, HYDROPHOBIC INTERACTIONS, KEYWDS 2 CYTOKINE-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.OUYANG,L.X.ZHAO,W.LIANG,N.SHAW,Z.-J.LIU,M.-F.LIANG REVDAT 1 29-FEB-12 3UX9 0 JRNL AUTH S.OUYANG,B.GONG,J.-Z.LI,L.-X.ZHAO,W.WU,F.-S.ZHANG,L.SUN, JRNL AUTH 2 S.-J.WANG,M.PAN,C.LI,W.LIANG,N.SHAW,J.ZHENG,G.-P.ZHAO, JRNL AUTH 3 Y.WANG,Z.-J.LIU,M.-F.LIANG JRNL TITL STRUCTURAL INSIGHTS INTO A HUMAN ANTI-IFN ANTIBODY EXERTING JRNL TITL 2 THERAPEUTIC POTENTIAL FOR SYSTEMIC LUPUS ERYTHEMATOSUS JRNL REF J.MOL.MED. 2012 JRNL REFN ESSN 1432-1440 JRNL PMID 22307521 JRNL DOI 10.1007/S00109-012-0866-3 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.200 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 21650 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1085 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5444 - 5.5962 0.99 2748 145 0.1770 0.2122 REMARK 3 2 5.5962 - 4.4435 0.99 2668 141 0.1425 0.1969 REMARK 3 3 4.4435 - 3.8823 0.98 2672 143 0.1475 0.2193 REMARK 3 4 3.8823 - 3.5275 0.98 2638 138 0.1837 0.2606 REMARK 3 5 3.5275 - 3.2748 0.96 2569 139 0.1965 0.2452 REMARK 3 6 3.2748 - 3.0818 0.94 2512 135 0.2039 0.2594 REMARK 3 7 3.0818 - 2.9275 0.90 2421 118 0.2185 0.2917 REMARK 3 8 2.9275 - 2.8001 0.86 2337 126 0.2389 0.3096 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 42.37 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -14.20590 REMARK 3 B22 (A**2) : -14.37910 REMARK 3 B33 (A**2) : -8.73820 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -3.77680 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 5695 REMARK 3 ANGLE : 1.300 7702 REMARK 3 CHIRALITY : 0.105 852 REMARK 3 PLANARITY : 0.005 991 REMARK 3 DIHEDRAL : 19.833 2019 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UX9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-DEC-11. REMARK 100 THE RCSB ID CODE IS RCSB069323. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21650 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM ACETATE, 0.1M TRIS (PH 8.5), REMARK 280 12% PEG 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 118.11250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.97250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 118.11250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.97250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 CYS A 1 REMARK 465 ASP A 2 REMARK 465 LEU A 3 REMARK 465 PRO A 4 REMARK 465 GLU A 5 REMARK 465 THR A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 GLY A 45 REMARK 465 ASN A 46 REMARK 465 GLN A 47 REMARK 465 PHE A 48 REMARK 465 GLN A 49 REMARK 465 LYS A 50 REMARK 465 GLU A 103 REMARK 465 GLU A 104 REMARK 465 ARG A 105 REMARK 465 VAL A 106 REMARK 465 GLY A 107 REMARK 465 GLU A 108 REMARK 465 THR A 109 REMARK 465 PRO A 110 REMARK 465 LEU A 111 REMARK 465 MET A 112 REMARK 465 ASN A 157 REMARK 465 LEU A 158 REMARK 465 GLN A 159 REMARK 465 GLU A 160 REMARK 465 ARG A 161 REMARK 465 LEU A 162 REMARK 465 ARG A 163 REMARK 465 ARG A 164 REMARK 465 LYS A 165 REMARK 465 GLU A 166 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 GLY B 113 REMARK 465 SER B 114 REMARK 465 GLY B 115 REMARK 465 GLY B 116 REMARK 465 SER B 117 REMARK 465 THR B 118 REMARK 465 ILE B 119 REMARK 465 THR B 120 REMARK 465 SER B 121 REMARK 465 TYR B 122 REMARK 465 ASN B 123 REMARK 465 VAL B 124 REMARK 465 TYR B 125 REMARK 465 TYR B 126 REMARK 465 THR B 127 REMARK 465 LYS B 128 REMARK 465 LEU B 129 REMARK 465 SER B 130 REMARK 465 SER B 131 REMARK 465 SER B 132 REMARK 465 GLY B 133 REMARK 465 SER B 134 REMARK 465 GLU B 255 REMARK 465 HIS B 256 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 CYS C 1 REMARK 465 ASP C 2 REMARK 465 LEU C 3 REMARK 465 PRO C 4 REMARK 465 GLU C 5 REMARK 465 THR C 6 REMARK 465 HIS C 7 REMARK 465 SER C 8 REMARK 465 ASP C 44 REMARK 465 GLY C 45 REMARK 465 ASN C 46 REMARK 465 GLN C 47 REMARK 465 PHE C 48 REMARK 465 GLN C 49 REMARK 465 LYS C 50 REMARK 465 ALA C 51 REMARK 465 GLN C 102 REMARK 465 GLU C 103 REMARK 465 GLU C 104 REMARK 465 ARG C 105 REMARK 465 VAL C 106 REMARK 465 GLY C 107 REMARK 465 GLU C 108 REMARK 465 THR C 109 REMARK 465 PRO C 110 REMARK 465 LEU C 111 REMARK 465 MET C 112 REMARK 465 ASN C 157 REMARK 465 LEU C 158 REMARK 465 GLN C 159 REMARK 465 GLU C 160 REMARK 465 ARG C 161 REMARK 465 LEU C 162 REMARK 465 ARG C 163 REMARK 465 ARG C 164 REMARK 465 LYS C 165 REMARK 465 GLU C 166 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 ASP D 3 REMARK 465 GLY D 113 REMARK 465 SER D 114 REMARK 465 GLY D 115 REMARK 465 GLY D 116 REMARK 465 SER D 117 REMARK 465 THR D 118 REMARK 465 ILE D 119 REMARK 465 THR D 120 REMARK 465 SER D 121 REMARK 465 TYR D 122 REMARK 465 ASN D 123 REMARK 465 VAL D 124 REMARK 465 TYR D 125 REMARK 465 TYR D 126 REMARK 465 THR D 127 REMARK 465 LYS D 128 REMARK 465 LEU D 129 REMARK 465 SER D 130 REMARK 465 SER D 131 REMARK 465 SER D 132 REMARK 465 GLY D 133 REMARK 465 SER D 134 REMARK 465 HIS D 256 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 102 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP C 10 O HOH C 176 1.55 REMARK 500 OD1 ASN A 11 CD2 LEU A 152 2.04 REMARK 500 OD1 ASP D 196 O HOH D 272 2.13 REMARK 500 O PHE A 36 NH1 ARG A 126 2.15 REMARK 500 OE2 GLU D 100 O HOH D 272 2.15 REMARK 500 O VAL C 143 O HOH C 175 2.17 REMARK 500 OD2 ASP C 10 NE ARG C 12 2.18 REMARK 500 N GLY B 60 O HOH B 259 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 97 NH2 ARG C 125 4556 1.63 REMARK 500 C LEU B 254 NH2 ARG C 13 4546 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 13 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG C 13 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 29 57.66 -112.44 REMARK 500 ASN B 30 -84.17 -113.96 REMARK 500 ASP B 53 56.90 39.02 REMARK 500 ASN B 54 -54.90 69.49 REMARK 500 SER B 59 -81.83 -16.64 REMARK 500 SER B 197 -52.16 -18.39 REMARK 500 ALA B 226 160.01 171.46 REMARK 500 ASP B 235 -110.90 58.72 REMARK 500 CYS C 29 60.03 -115.66 REMARK 500 ASN D 30 -85.39 -115.38 REMARK 500 ASN D 54 -53.64 70.38 REMARK 500 SER D 59 -100.21 -11.14 REMARK 500 PRO D 62 163.48 -48.72 REMARK 500 VAL D 182 -56.66 -121.15 REMARK 500 SER D 197 -52.19 -16.28 REMARK 500 ALA D 226 161.23 169.27 REMARK 500 ASP D 235 -109.34 60.74 REMARK 500 LEU D 254 -179.10 -68.68 REMARK 500 REMARK 500 REMARK: NULL DBREF 3UX9 A 1 166 UNP P01562 IFNA1_HUMAN 24 189 DBREF 3UX9 C 1 166 UNP P01562 IFNA1_HUMAN 24 189 DBREF 3UX9 B 1 256 PDB 3UX9 3UX9 1 256 DBREF 3UX9 D 1 256 PDB 3UX9 3UX9 1 256 SEQADV 3UX9 SER A -2 UNP P01562 EXPRESSION TAG SEQADV 3UX9 ASN A -1 UNP P01562 EXPRESSION TAG SEQADV 3UX9 ALA A 0 UNP P01562 EXPRESSION TAG SEQADV 3UX9 SER C -2 UNP P01562 EXPRESSION TAG SEQADV 3UX9 ASN C -1 UNP P01562 EXPRESSION TAG SEQADV 3UX9 ALA C 0 UNP P01562 EXPRESSION TAG SEQRES 1 A 169 SER ASN ALA CYS ASP LEU PRO GLU THR HIS SER LEU ASP SEQRES 2 A 169 ASN ARG ARG THR LEU MET LEU LEU ALA GLN MET SER ARG SEQRES 3 A 169 ILE SER PRO SER SER CYS LEU MET ASP ARG HIS ASP PHE SEQRES 4 A 169 GLY PHE PRO GLN GLU GLU PHE ASP GLY ASN GLN PHE GLN SEQRES 5 A 169 LYS ALA PRO ALA ILE SER VAL LEU HIS GLU LEU ILE GLN SEQRES 6 A 169 GLN ILE PHE ASN LEU PHE THR THR LYS ASP SER SER ALA SEQRES 7 A 169 ALA TRP ASP GLU ASP LEU LEU ASP LYS PHE CYS THR GLU SEQRES 8 A 169 LEU TYR GLN GLN LEU ASN ASP LEU GLU ALA CYS VAL MET SEQRES 9 A 169 GLN GLU GLU ARG VAL GLY GLU THR PRO LEU MET ASN ALA SEQRES 10 A 169 ASP SER ILE LEU ALA VAL LYS LYS TYR PHE ARG ARG ILE SEQRES 11 A 169 THR LEU TYR LEU THR GLU LYS LYS TYR SER PRO CYS ALA SEQRES 12 A 169 TRP GLU VAL VAL ARG ALA GLU ILE MET ARG SER LEU SER SEQRES 13 A 169 LEU SER THR ASN LEU GLN GLU ARG LEU ARG ARG LYS GLU SEQRES 1 B 256 MET ALA ASP ILE VAL LEU THR GLN PRO PRO SER VAL SER SEQRES 2 B 256 GLY ALA PRO GLY GLN ARG VAL THR ILE SER CYS SER GLY SEQRES 3 B 256 SER SER SER ASN ILE GLY SER ASN TYR VAL SER TRP TYR SEQRES 4 B 256 GLN GLN LEU PRO GLY THR ALA PRO LYS LEU LEU ILE TYR SEQRES 5 B 256 ASP ASN ASN GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SEQRES 6 B 256 SER GLY SER LYS SER GLY THR SER ALA SER LEU ALA ILE SEQRES 7 B 256 THR GLY LEU GLN SER GLU ASP GLU ALA ASP TYR TYR CYS SEQRES 8 B 256 GLN VAL ARG ASP ASN ASN GLU ASN GLU TRP VAL PHE GLY SEQRES 9 B 256 GLY GLY THR LYS LEU THR VAL LEU GLY SER GLY GLY SER SEQRES 10 B 256 THR ILE THR SER TYR ASN VAL TYR TYR THR LYS LEU SER SEQRES 11 B 256 SER SER GLY SER GLU VAL GLN LEU VAL GLU SER GLY GLY SEQRES 12 B 256 GLY LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS SEQRES 13 B 256 ALA ALA SER GLY PHE THR PHE SER SER TYR ALA MET SER SEQRES 14 B 256 TRP VAL ARG GLN ALA PRO GLY LYS GLY LEU GLU TRP VAL SEQRES 15 B 256 SER ALA ILE SER GLY SER GLY GLY SER THR TYR TYR ALA SEQRES 16 B 256 ASP SER VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SEQRES 17 B 256 SER LYS ASN THR LEU TYR LEU GLN MET ASN SER LEU ARG SEQRES 18 B 256 ALA GLU ASP THR ALA VAL TYR TYR CYS ALA ARG TYR ILE SEQRES 19 B 256 ASP PHE GLY ASP HIS MET ASP PHE TRP GLY GLN GLY THR SEQRES 20 B 256 LEU VAL THR VAL SER SER LEU GLU HIS SEQRES 1 C 169 SER ASN ALA CYS ASP LEU PRO GLU THR HIS SER LEU ASP SEQRES 2 C 169 ASN ARG ARG THR LEU MET LEU LEU ALA GLN MET SER ARG SEQRES 3 C 169 ILE SER PRO SER SER CYS LEU MET ASP ARG HIS ASP PHE SEQRES 4 C 169 GLY PHE PRO GLN GLU GLU PHE ASP GLY ASN GLN PHE GLN SEQRES 5 C 169 LYS ALA PRO ALA ILE SER VAL LEU HIS GLU LEU ILE GLN SEQRES 6 C 169 GLN ILE PHE ASN LEU PHE THR THR LYS ASP SER SER ALA SEQRES 7 C 169 ALA TRP ASP GLU ASP LEU LEU ASP LYS PHE CYS THR GLU SEQRES 8 C 169 LEU TYR GLN GLN LEU ASN ASP LEU GLU ALA CYS VAL MET SEQRES 9 C 169 GLN GLU GLU ARG VAL GLY GLU THR PRO LEU MET ASN ALA SEQRES 10 C 169 ASP SER ILE LEU ALA VAL LYS LYS TYR PHE ARG ARG ILE SEQRES 11 C 169 THR LEU TYR LEU THR GLU LYS LYS TYR SER PRO CYS ALA SEQRES 12 C 169 TRP GLU VAL VAL ARG ALA GLU ILE MET ARG SER LEU SER SEQRES 13 C 169 LEU SER THR ASN LEU GLN GLU ARG LEU ARG ARG LYS GLU SEQRES 1 D 256 MET ALA ASP ILE VAL LEU THR GLN PRO PRO SER VAL SER SEQRES 2 D 256 GLY ALA PRO GLY GLN ARG VAL THR ILE SER CYS SER GLY SEQRES 3 D 256 SER SER SER ASN ILE GLY SER ASN TYR VAL SER TRP TYR SEQRES 4 D 256 GLN GLN LEU PRO GLY THR ALA PRO LYS LEU LEU ILE TYR SEQRES 5 D 256 ASP ASN ASN GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SEQRES 6 D 256 SER GLY SER LYS SER GLY THR SER ALA SER LEU ALA ILE SEQRES 7 D 256 THR GLY LEU GLN SER GLU ASP GLU ALA ASP TYR TYR CYS SEQRES 8 D 256 GLN VAL ARG ASP ASN ASN GLU ASN GLU TRP VAL PHE GLY SEQRES 9 D 256 GLY GLY THR LYS LEU THR VAL LEU GLY SER GLY GLY SER SEQRES 10 D 256 THR ILE THR SER TYR ASN VAL TYR TYR THR LYS LEU SER SEQRES 11 D 256 SER SER GLY SER GLU VAL GLN LEU VAL GLU SER GLY GLY SEQRES 12 D 256 GLY LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS SEQRES 13 D 256 ALA ALA SER GLY PHE THR PHE SER SER TYR ALA MET SER SEQRES 14 D 256 TRP VAL ARG GLN ALA PRO GLY LYS GLY LEU GLU TRP VAL SEQRES 15 D 256 SER ALA ILE SER GLY SER GLY GLY SER THR TYR TYR ALA SEQRES 16 D 256 ASP SER VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SEQRES 17 D 256 SER LYS ASN THR LEU TYR LEU GLN MET ASN SER LEU ARG SEQRES 18 D 256 ALA GLU ASP THR ALA VAL TYR TYR CYS ALA ARG TYR ILE SEQRES 19 D 256 ASP PHE GLY ASP HIS MET ASP PHE TRP GLY GLN GLY THR SEQRES 20 D 256 LEU VAL THR VAL SER SER LEU GLU HIS FORMUL 5 HOH *40(H2 O) HELIX 1 1 ASN A 11 MET A 21 1 11 HELIX 2 2 SER A 25 CYS A 29 5 5 HELIX 3 3 PRO A 39 ASP A 44 5 6 HELIX 4 4 ALA A 53 THR A 69 1 17 HELIX 5 5 THR A 70 TRP A 77 1 8 HELIX 6 6 ASP A 78 VAL A 100 1 23 HELIX 7 7 ALA A 114 LYS A 134 1 21 HELIX 8 8 SER A 137 THR A 156 1 20 HELIX 9 9 GLN B 82 GLU B 86 5 5 HELIX 10 10 THR B 162 TYR B 166 5 5 HELIX 11 11 ASP B 196 LYS B 199 5 4 HELIX 12 12 ARG B 221 THR B 225 5 5 HELIX 13 13 ASN C 11 MET C 21 1 11 HELIX 14 14 SER C 25 CYS C 29 5 5 HELIX 15 15 PRO C 39 PHE C 43 5 5 HELIX 16 16 ALA C 53 THR C 69 1 17 HELIX 17 17 THR C 70 TRP C 77 1 8 HELIX 18 18 ASP C 78 VAL C 100 1 23 HELIX 19 19 ALA C 114 LYS C 134 1 21 HELIX 20 20 SER C 137 THR C 156 1 20 HELIX 21 21 GLN D 82 GLU D 86 5 5 HELIX 22 22 THR D 162 TYR D 166 5 5 HELIX 23 23 ASP D 196 LYS D 199 5 4 HELIX 24 24 ARG D 221 THR D 225 5 5 SHEET 1 A 5 SER B 11 GLY B 14 0 SHEET 2 A 5 THR B 107 VAL B 111 1 O THR B 110 N VAL B 12 SHEET 3 A 5 ALA B 87 ASP B 95 -1 N ALA B 87 O LEU B 109 SHEET 4 A 5 SER B 37 GLN B 41 -1 N TYR B 39 O TYR B 90 SHEET 5 A 5 LYS B 48 ILE B 51 -1 O LYS B 48 N GLN B 40 SHEET 1 B 4 SER B 11 GLY B 14 0 SHEET 2 B 4 THR B 107 VAL B 111 1 O THR B 110 N VAL B 12 SHEET 3 B 4 ALA B 87 ASP B 95 -1 N ALA B 87 O LEU B 109 SHEET 4 B 4 GLU B 100 PHE B 103 -1 O GLU B 100 N ASP B 95 SHEET 1 C 3 VAL B 20 SER B 25 0 SHEET 2 C 3 SER B 73 ILE B 78 -1 O LEU B 76 N ILE B 22 SHEET 3 C 3 PHE B 65 SER B 70 -1 N SER B 66 O ALA B 77 SHEET 1 D 4 GLN B 137 SER B 141 0 SHEET 2 D 4 LEU B 152 SER B 159 -1 O SER B 159 N GLN B 137 SHEET 3 D 4 THR B 212 MET B 217 -1 O MET B 217 N LEU B 152 SHEET 4 D 4 PHE B 202 ASP B 207 -1 N THR B 203 O GLN B 216 SHEET 1 E 6 GLY B 144 VAL B 146 0 SHEET 2 E 6 THR B 247 VAL B 251 1 O THR B 250 N GLY B 144 SHEET 3 E 6 ALA B 226 TYR B 233 -1 N TYR B 228 O THR B 247 SHEET 4 E 6 ALA B 167 GLN B 173 -1 N VAL B 171 O TYR B 229 SHEET 5 E 6 LEU B 179 ILE B 185 -1 O GLU B 180 N ARG B 172 SHEET 6 E 6 THR B 192 TYR B 194 -1 O TYR B 193 N ALA B 184 SHEET 1 F 4 GLY B 144 VAL B 146 0 SHEET 2 F 4 THR B 247 VAL B 251 1 O THR B 250 N GLY B 144 SHEET 3 F 4 ALA B 226 TYR B 233 -1 N TYR B 228 O THR B 247 SHEET 4 F 4 MET B 240 TRP B 243 -1 O PHE B 242 N ARG B 232 SHEET 1 G 5 SER D 11 GLY D 14 0 SHEET 2 G 5 THR D 107 VAL D 111 1 O THR D 110 N VAL D 12 SHEET 3 G 5 ALA D 87 ASP D 95 -1 N ALA D 87 O LEU D 109 SHEET 4 G 5 SER D 37 GLN D 41 -1 N TYR D 39 O TYR D 90 SHEET 5 G 5 LYS D 48 ILE D 51 -1 O LYS D 48 N GLN D 40 SHEET 1 H 4 SER D 11 GLY D 14 0 SHEET 2 H 4 THR D 107 VAL D 111 1 O THR D 110 N VAL D 12 SHEET 3 H 4 ALA D 87 ASP D 95 -1 N ALA D 87 O LEU D 109 SHEET 4 H 4 GLU D 100 PHE D 103 -1 O GLU D 100 N ASP D 95 SHEET 1 I 3 VAL D 20 SER D 25 0 SHEET 2 I 3 SER D 73 ILE D 78 -1 O LEU D 76 N ILE D 22 SHEET 3 I 3 PHE D 65 SER D 70 -1 N SER D 70 O SER D 73 SHEET 1 J 4 GLN D 137 SER D 141 0 SHEET 2 J 4 LEU D 152 SER D 159 -1 O SER D 159 N GLN D 137 SHEET 3 J 4 THR D 212 MET D 217 -1 O MET D 217 N LEU D 152 SHEET 4 J 4 PHE D 202 ASP D 207 -1 N THR D 203 O GLN D 216 SHEET 1 K 6 GLY D 144 VAL D 146 0 SHEET 2 K 6 THR D 247 VAL D 251 1 O THR D 250 N GLY D 144 SHEET 3 K 6 ALA D 226 TYR D 233 -1 N TYR D 228 O THR D 247 SHEET 4 K 6 ALA D 167 GLN D 173 -1 N VAL D 171 O TYR D 229 SHEET 5 K 6 LEU D 179 ILE D 185 -1 O GLU D 180 N ARG D 172 SHEET 6 K 6 THR D 192 TYR D 194 -1 O TYR D 193 N ALA D 184 SHEET 1 L 4 GLY D 144 VAL D 146 0 SHEET 2 L 4 THR D 247 VAL D 251 1 O THR D 250 N GLY D 144 SHEET 3 L 4 ALA D 226 TYR D 233 -1 N TYR D 228 O THR D 247 SHEET 4 L 4 MET D 240 TRP D 243 -1 O PHE D 242 N ARG D 232 SSBOND 1 CYS A 29 CYS A 139 1555 1555 2.04 SSBOND 2 CYS B 24 CYS B 91 1555 1555 2.02 SSBOND 3 CYS B 156 CYS B 230 1555 1555 2.02 SSBOND 4 CYS C 29 CYS C 139 1555 1555 2.04 SSBOND 5 CYS D 24 CYS D 91 1555 1555 2.02 SSBOND 6 CYS D 156 CYS D 230 1555 1555 2.02 CRYST1 236.225 91.945 43.633 90.00 99.75 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004233 0.000000 0.000727 0.00000 SCALE2 0.000000 0.010876 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023254 0.00000