PDB Short entry for 3V0D HEADER HYDROLASE 07-DEC-11 3V0D TITLE CRYSTAL STRUCTURE OF CIONA INTESTINALIS VOLTAGE SENSOR-CONTAINING TITLE 2 PHOSPHATASE (CI-VSP), RESIDUES 241-576(C363S) COMPND MOL_ID: 1; COMPND 2 MOLECULE: VOLTAGE-SENSOR CONTAINING PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 241-576; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CIONA INTESTINALIS; SOURCE 3 ORGANISM_COMMON: TRANSPARENT SEA SQUIRT; SOURCE 4 ORGANISM_TAXID: 7719; SOURCE 5 GENE: CI-VSP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA DE3 PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS PTP, C2, PHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.LIU,S.C.KOHOUT,Q.XU,S.MULLER,C.KIMBERLIN,E.Y.ISACOFF,D.L.MINOR REVDAT 5 03-APR-24 3V0D 1 REMARK REVDAT 4 28-FEB-24 3V0D 1 REMARK SEQADV REVDAT 3 12-NOV-14 3V0D 1 AUTHOR REVDAT 2 25-JUL-12 3V0D 1 JRNL REVDAT 1 09-MAY-12 3V0D 0 JRNL AUTH L.LIU,S.C.KOHOUT,Q.XU,S.MULLER,C.R.KIMBERLIN,E.Y.ISACOFF, JRNL AUTH 2 D.L.MINOR JRNL TITL A GLUTAMATE SWITCH CONTROLS VOLTAGE-SENSITIVE PHOSPHATASE JRNL TITL 2 FUNCTION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 633 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 22562138 JRNL DOI 10.1038/NSMB.2289 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 84.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 276406 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 14723 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 19864 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 1101 REMARK 3 BIN FREE R VALUE : 0.2330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5245 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 975 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : 0.69000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.65000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.028 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.028 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.018 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.838 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5848 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7933 ; 1.472 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 725 ; 6.287 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 298 ;34.743 ;23.490 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1121 ;12.874 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 51 ;17.104 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 859 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4427 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3417 ; 1.469 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5621 ; 2.350 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2431 ; 2.953 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2277 ; 4.534 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5848 ; 1.348 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3V0D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069435. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1158 REMARK 200 MONOCHROMATOR : KHOZU DOUBLE FLAT CRYSTAL REMARK 200 OPTICS : DOUBLE CRYSTAL SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 291443 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 86.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.47500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY1D5R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17.5-22.5% PEG 2000, 0.1 M AMMONIUM REMARK 280 DIHYDROPHOSPHATE, 0.1 M TRIS-HCL, PH 8.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.85300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 238 REMARK 465 HIS A 239 REMARK 465 MET A 240 REMARK 465 LYS A 241 REMARK 465 ALA A 242 REMARK 465 SER A 243 REMARK 465 SER A 244 REMARK 465 ARG A 245 REMARK 465 ARG A 246 REMARK 465 THR A 247 REMARK 465 ILE A 248 REMARK 465 SER A 249 REMARK 465 GLN A 250 REMARK 465 ILE A 576 REMARK 465 GLY B 238 REMARK 465 HIS B 239 REMARK 465 MET B 240 REMARK 465 LYS B 241 REMARK 465 ALA B 242 REMARK 465 SER B 243 REMARK 465 SER B 244 REMARK 465 ARG B 245 REMARK 465 GLY B 280 REMARK 465 ARG B 281 REMARK 465 GLN B 282 REMARK 465 SER B 283 REMARK 465 LEU B 284 REMARK 465 ILE B 576 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS A 332 OE2 GLU A 411 2.12 REMARK 500 ND1 HIS B 332 OE1 GLU B 411 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 495 CB CYS A 495 SG -0.097 REMARK 500 CYS B 495 CB CYS B 495 SG -0.168 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 417 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 CYS A 492 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 CYS B 492 CA - CB - SG ANGL. DEV. = 9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 302 17.32 59.74 REMARK 500 HIS A 323 47.09 -104.96 REMARK 500 SER A 363 -133.64 -133.02 REMARK 500 LYS A 367 -90.25 -119.41 REMARK 500 ASN A 456 14.91 -147.67 REMARK 500 ASN A 550 -52.09 112.12 REMARK 500 ARG B 286 65.67 33.72 REMARK 500 HIS B 323 47.46 -105.83 REMARK 500 SER B 363 -134.66 -135.31 REMARK 500 LYS B 367 -89.93 -117.66 REMARK 500 THR B 399 -169.65 -123.40 REMARK 500 ASN B 456 14.41 -140.62 REMARK 500 ASN B 550 -51.10 110.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3V0E RELATED DB: PDB REMARK 900 RELATED ID: 3V0F RELATED DB: PDB REMARK 900 RELATED ID: 3V0G RELATED DB: PDB REMARK 900 RELATED ID: 3V0H RELATED DB: PDB REMARK 900 RELATED ID: 3V0I RELATED DB: PDB REMARK 900 RELATED ID: 3V0J RELATED DB: PDB DBREF 3V0D A 241 576 UNP Q4W8A1 Q4W8A1_CIOIN 241 576 DBREF 3V0D B 241 576 UNP Q4W8A1 Q4W8A1_CIOIN 241 576 SEQADV 3V0D GLY A 238 UNP Q4W8A1 EXPRESSION TAG SEQADV 3V0D HIS A 239 UNP Q4W8A1 EXPRESSION TAG SEQADV 3V0D MET A 240 UNP Q4W8A1 EXPRESSION TAG SEQADV 3V0D SER A 363 UNP Q4W8A1 CYS 363 ENGINEERED MUTATION SEQADV 3V0D GLY B 238 UNP Q4W8A1 EXPRESSION TAG SEQADV 3V0D HIS B 239 UNP Q4W8A1 EXPRESSION TAG SEQADV 3V0D MET B 240 UNP Q4W8A1 EXPRESSION TAG SEQADV 3V0D SER B 363 UNP Q4W8A1 CYS 363 ENGINEERED MUTATION SEQRES 1 A 339 GLY HIS MET LYS ALA SER SER ARG ARG THR ILE SER GLN SEQRES 2 A 339 ASN LYS ARG ARG TYR ARG LYS ASP GLY PHE ASP LEU ASP SEQRES 3 A 339 LEU THR TYR VAL THR ASP HIS VAL ILE ALA MET SER PHE SEQRES 4 A 339 PRO SER SER GLY ARG GLN SER LEU PHE ARG ASN PRO ILE SEQRES 5 A 339 GLY GLU VAL SER ARG PHE PHE LYS THR LYS HIS PRO ASP SEQRES 6 A 339 LYS PHE ARG ILE TYR ASN LEU CYS SER GLU ARG GLY TYR SEQRES 7 A 339 ASP GLU THR LYS PHE ASP ASN HIS VAL TYR ARG VAL MET SEQRES 8 A 339 ILE ASP ASP HIS ASN VAL PRO THR LEU VAL ASP LEU LEU SEQRES 9 A 339 LYS PHE ILE ASP ASP ALA LYS VAL TRP MET THR SER ASP SEQRES 10 A 339 PRO ASP HIS VAL ILE ALA ILE HIS SER LYS GLY GLY LYS SEQRES 11 A 339 GLY ARG THR GLY THR LEU VAL SER SER TRP LEU LEU GLU SEQRES 12 A 339 ASP GLY LYS PHE ASP THR ALA LYS GLU ALA LEU GLU TYR SEQRES 13 A 339 PHE GLY SER ARG ARG THR ASP PHE GLU VAL GLY ASP VAL SEQRES 14 A 339 PHE GLN GLY VAL GLU THR ALA SER GLN ILE ARG TYR VAL SEQRES 15 A 339 GLY TYR PHE GLU LYS ILE LYS LYS ASN TYR GLY GLY GLN SEQRES 16 A 339 LEU PRO PRO MET LYS LYS LEU LYS VAL THR GLY VAL THR SEQRES 17 A 339 ILE THR ALA ILE GLN GLY VAL GLY ARG GLY ASN GLY SER SEQRES 18 A 339 ASP LEU SER MET GLN ILE VAL SER GLU ARG GLN GLU VAL SEQRES 19 A 339 LEU LEU CYS LYS PHE ALA GLU GLY TYR ASN CYS ALA LEU SEQRES 20 A 339 GLN TYR ASP ALA THR ASP ASP CYS VAL THR CYS GLU VAL SEQRES 21 A 339 LYS ASN CYS PRO VAL LEU ALA GLY ASP ILE LYS VAL ARG SEQRES 22 A 339 PHE MET SER THR SER LYS SER LEU PRO ARG GLY TYR ASP SEQRES 23 A 339 ASN CYS PRO PHE TYR PHE TRP PHE ASN THR SER LEU VAL SEQRES 24 A 339 GLU GLY ASP HIS VAL THR LEU LYS ARG GLU GLU ILE ASP SEQRES 25 A 339 ASN PRO HIS LYS LYS LYS THR TRP LYS ILE TYR ARG ASP SEQRES 26 A 339 ASN PHE THR VAL LYS LEU THR PHE SER ASP ALA GLU ASP SEQRES 27 A 339 ILE SEQRES 1 B 339 GLY HIS MET LYS ALA SER SER ARG ARG THR ILE SER GLN SEQRES 2 B 339 ASN LYS ARG ARG TYR ARG LYS ASP GLY PHE ASP LEU ASP SEQRES 3 B 339 LEU THR TYR VAL THR ASP HIS VAL ILE ALA MET SER PHE SEQRES 4 B 339 PRO SER SER GLY ARG GLN SER LEU PHE ARG ASN PRO ILE SEQRES 5 B 339 GLY GLU VAL SER ARG PHE PHE LYS THR LYS HIS PRO ASP SEQRES 6 B 339 LYS PHE ARG ILE TYR ASN LEU CYS SER GLU ARG GLY TYR SEQRES 7 B 339 ASP GLU THR LYS PHE ASP ASN HIS VAL TYR ARG VAL MET SEQRES 8 B 339 ILE ASP ASP HIS ASN VAL PRO THR LEU VAL ASP LEU LEU SEQRES 9 B 339 LYS PHE ILE ASP ASP ALA LYS VAL TRP MET THR SER ASP SEQRES 10 B 339 PRO ASP HIS VAL ILE ALA ILE HIS SER LYS GLY GLY LYS SEQRES 11 B 339 GLY ARG THR GLY THR LEU VAL SER SER TRP LEU LEU GLU SEQRES 12 B 339 ASP GLY LYS PHE ASP THR ALA LYS GLU ALA LEU GLU TYR SEQRES 13 B 339 PHE GLY SER ARG ARG THR ASP PHE GLU VAL GLY ASP VAL SEQRES 14 B 339 PHE GLN GLY VAL GLU THR ALA SER GLN ILE ARG TYR VAL SEQRES 15 B 339 GLY TYR PHE GLU LYS ILE LYS LYS ASN TYR GLY GLY GLN SEQRES 16 B 339 LEU PRO PRO MET LYS LYS LEU LYS VAL THR GLY VAL THR SEQRES 17 B 339 ILE THR ALA ILE GLN GLY VAL GLY ARG GLY ASN GLY SER SEQRES 18 B 339 ASP LEU SER MET GLN ILE VAL SER GLU ARG GLN GLU VAL SEQRES 19 B 339 LEU LEU CYS LYS PHE ALA GLU GLY TYR ASN CYS ALA LEU SEQRES 20 B 339 GLN TYR ASP ALA THR ASP ASP CYS VAL THR CYS GLU VAL SEQRES 21 B 339 LYS ASN CYS PRO VAL LEU ALA GLY ASP ILE LYS VAL ARG SEQRES 22 B 339 PHE MET SER THR SER LYS SER LEU PRO ARG GLY TYR ASP SEQRES 23 B 339 ASN CYS PRO PHE TYR PHE TRP PHE ASN THR SER LEU VAL SEQRES 24 B 339 GLU GLY ASP HIS VAL THR LEU LYS ARG GLU GLU ILE ASP SEQRES 25 B 339 ASN PRO HIS LYS LYS LYS THR TRP LYS ILE TYR ARG ASP SEQRES 26 B 339 ASN PHE THR VAL LYS LEU THR PHE SER ASP ALA GLU ASP SEQRES 27 B 339 ILE HET PO4 A 2 10 HET PO4 A 3 5 HET PO4 B 1 10 HET PO4 B 4 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 4(O4 P 3-) FORMUL 7 HOH *975(H2 O) HELIX 1 1 ILE A 289 HIS A 300 1 12 HELIX 2 2 ASP A 316 ASP A 321 5 6 HELIX 3 3 THR A 336 SER A 353 1 18 HELIX 4 4 LYS A 367 ASP A 381 1 15 HELIX 5 5 THR A 386 THR A 399 1 14 HELIX 6 6 THR A 412 TYR A 429 1 18 HELIX 7 7 GLY A 521 CYS A 525 5 5 HELIX 8 8 SER A 534 VAL A 536 5 3 HELIX 9 9 GLU A 546 ILE A 548 5 3 HELIX 10 10 LYS A 553 TRP A 557 5 5 HELIX 11 11 THR B 247 LYS B 252 1 6 HELIX 12 12 PRO B 288 HIS B 300 1 13 HELIX 13 13 ASP B 316 ASP B 321 5 6 HELIX 14 14 THR B 336 SER B 353 1 18 HELIX 15 15 LYS B 367 ASP B 381 1 15 HELIX 16 16 THR B 386 THR B 399 1 14 HELIX 17 17 THR B 412 TYR B 429 1 18 HELIX 18 18 GLY B 521 CYS B 525 5 5 HELIX 19 19 SER B 534 VAL B 536 5 3 HELIX 20 20 GLU B 546 ILE B 548 5 3 HELIX 21 21 LYS B 553 TRP B 557 5 5 SHEET 1 A 6 ARG A 254 LYS A 257 0 SHEET 2 A 6 PHE A 260 THR A 268 -1 O LEU A 262 N TYR A 255 SHEET 3 A 6 VAL A 271 MET A 274 -1 O ALA A 273 N THR A 265 SHEET 4 A 6 VAL A 358 HIS A 362 1 O ILE A 361 N ILE A 272 SHEET 5 A 6 PHE A 304 CYS A 310 1 N TYR A 307 O ALA A 360 SHEET 6 A 6 VAL A 324 ILE A 329 1 O VAL A 327 N ASN A 308 SHEET 1 B 2 PRO A 277 SER A 278 0 SHEET 2 B 2 ASN A 287 PRO A 288 1 O ASN A 287 N SER A 278 SHEET 1 C 5 CYS A 482 ASP A 487 0 SHEET 2 C 5 CYS A 492 VAL A 497 -1 O CYS A 492 N ASP A 487 SHEET 3 C 5 LEU A 439 THR A 447 -1 N VAL A 444 O CYS A 495 SHEET 4 C 5 THR A 565 ASP A 572 -1 O THR A 569 N THR A 442 SHEET 5 C 5 HIS A 540 LYS A 544 -1 N LEU A 543 O VAL A 566 SHEET 1 D 4 GLN A 469 LYS A 475 0 SHEET 2 D 4 LEU A 460 SER A 466 -1 N ILE A 464 O VAL A 471 SHEET 3 D 4 ASP A 506 SER A 513 -1 O LYS A 508 N VAL A 465 SHEET 4 D 4 PHE A 527 ASN A 532 -1 O PHE A 531 N ILE A 507 SHEET 1 E 2 TYR B 255 LYS B 257 0 SHEET 2 E 2 PHE B 260 LEU B 262 -1 O LEU B 262 N TYR B 255 SHEET 1 F 5 LEU B 264 THR B 268 0 SHEET 2 F 5 VAL B 271 MET B 274 -1 O ALA B 273 N THR B 265 SHEET 3 F 5 VAL B 358 HIS B 362 1 O ILE B 361 N ILE B 272 SHEET 4 F 5 PHE B 304 CYS B 310 1 N TYR B 307 O ALA B 360 SHEET 5 F 5 VAL B 324 ILE B 329 1 O TYR B 325 N ILE B 306 SHEET 1 G 5 CYS B 482 ASP B 487 0 SHEET 2 G 5 CYS B 492 VAL B 497 -1 O CYS B 492 N ASP B 487 SHEET 3 G 5 LEU B 439 THR B 447 -1 N VAL B 444 O CYS B 495 SHEET 4 G 5 THR B 565 ASP B 572 -1 O THR B 569 N THR B 442 SHEET 5 G 5 HIS B 540 LYS B 544 -1 N LEU B 543 O VAL B 566 SHEET 1 H 4 GLN B 469 LYS B 475 0 SHEET 2 H 4 LEU B 460 SER B 466 -1 N ILE B 464 O VAL B 471 SHEET 3 H 4 ASP B 506 SER B 513 -1 O LYS B 508 N VAL B 465 SHEET 4 H 4 PHE B 527 ASN B 532 -1 O PHE B 531 N ILE B 507 SITE 1 AC1 11 HOH A 68 ASP A 331 SER A 363 LYS A 364 SITE 2 AC1 11 GLY A 365 GLY A 366 LYS A 367 GLY A 368 SITE 3 AC1 11 ARG A 369 HOH A 612 HOH A 861 SITE 1 AC2 9 HOH A 79 HOH A 96 HOH A 229 HIS A 270 SITE 2 AC2 9 LYS A 383 HOH A 733 HOH A 841 HOH A 875 SITE 3 AC2 9 HOH A 959 SITE 1 AC3 11 HOH B 12 ASP B 331 SER B 363 LYS B 364 SITE 2 AC3 11 GLY B 365 GLY B 366 LYS B 367 GLY B 368 SITE 3 AC3 11 ARG B 369 HOH B 627 HOH B 847 SITE 1 AC4 10 HOH B 37 HIS B 270 LYS B 383 HOH B 591 SITE 2 AC4 10 HOH B 592 HOH B 595 HOH B 603 HOH B 767 SITE 3 AC4 10 HOH B 854 HOH B 933 CRYST1 50.967 85.706 84.327 90.00 90.96 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019621 0.000000 0.000330 0.00000 SCALE2 0.000000 0.011668 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011860 0.00000