PDB Short entry for 3VIL HEADER HYDROLASE 03-OCT-11 3VIL TITLE CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE FROM TERMITE NEOTERMES TITLE 2 KOSHUNENSIS IN COMPLEX WITH SALICIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.21; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEOTERMES KOSHUNENSIS; SOURCE 3 ORGANISM_TAXID: 60586; SOURCE 4 GENE: NKBG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL-21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS CELLULASES, GLYCOSYL HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.Y.JENG,C.I.LIU,A.H.J.WANG REVDAT 3 29-JUL-20 3VIL 1 REMARK SEQADV LINK SITE REVDAT 2 26-JUN-13 3VIL 1 JRNL REVDAT 1 04-JUL-12 3VIL 0 JRNL AUTH W.Y.JENG,N.C.WANG,C.T.LIN,W.J.CHANG,C.I.LIU,A.H.J.WANG JRNL TITL HIGH-RESOLUTION STRUCTURES OF NEOTERMES KOSHUNENSIS JRNL TITL 2 BETA-GLUCOSIDASE MUTANTS PROVIDE INSIGHTS INTO THE CATALYTIC JRNL TITL 3 MECHANISM AND THE SYNTHESIS OF GLUCOCONJUGATES JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 829 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22751668 JRNL DOI 10.1107/S0907444912013224 REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 165967 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.129 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.154 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8352 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 22871 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 1242 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3808 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 669 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.03000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.46000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.031 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.020 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.971 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4043 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5523 ; 1.431 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 499 ; 5.940 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 214 ;32.841 ;24.252 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 632 ;10.661 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.271 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 572 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3213 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2386 ; 1.379 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3856 ; 1.985 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1657 ; 2.963 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1653 ; 4.210 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4043 ; 1.422 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 498 REMARK 3 ORIGIN FOR THE GROUP (A): -29.3385 87.8597 15.7032 REMARK 3 T TENSOR REMARK 3 T11: 0.0173 T22: 0.0132 REMARK 3 T33: 0.0124 T12: 0.0039 REMARK 3 T13: -0.0006 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.4338 L22: 0.1890 REMARK 3 L33: 0.1967 L12: -0.0183 REMARK 3 L13: 0.0774 L23: -0.0583 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: -0.0703 S13: -0.0186 REMARK 3 S21: 0.0302 S22: 0.0145 S23: -0.0266 REMARK 3 S31: -0.0125 S32: -0.0024 S33: -0.0028 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3VIL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000095089. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97622 REMARK 200 MONOCHROMATOR : HORIZONTALLY FOCUSING SINGLE REMARK 200 CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : VERTICALLY FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 166145 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 34.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.45800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3AHZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, 18-21%(W/V) PEG 3350, REMARK 280 0.1-0.25M MGCL2, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.45400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.26800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.45400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.26800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -92.90800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 511 LIES ON A SPECIAL POSITION. REMARK 375 CL CL A 512 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 20 REMARK 465 ASP A 21 REMARK 465 VAL A 22 REMARK 465 ALA A 23 REMARK 465 SER A 24 REMARK 465 SER A 25 REMARK 465 ASP A 26 REMARK 465 LEU A 499 REMARK 465 GLU A 500 REMARK 465 HIS A 501 REMARK 465 HIS A 502 REMARK 465 HIS A 503 REMARK 465 HIS A 504 REMARK 465 HIS A 505 REMARK 465 HIS A 506 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 103 O HOH A 1210 1.92 REMARK 500 O HOH A 619 O HOH A 1191 1.93 REMARK 500 O HOH A 1127 O HOH A 1175 2.11 REMARK 500 O HOH A 906 O HOH A 1020 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 280 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 80 -131.51 54.69 REMARK 500 TRP A 149 -4.57 96.03 REMARK 500 ASP A 150 63.71 -101.65 REMARK 500 ILE A 216 -66.75 -137.26 REMARK 500 ASP A 291 170.98 67.76 REMARK 500 TYR A 337 -33.23 -133.52 REMARK 500 TRP A 452 -130.14 52.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 510 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 823 O REMARK 620 2 HOH A 948 O 158.4 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AHZ RELATED DB: PDB REMARK 900 RELATED ID: 3AI0 RELATED DB: PDB REMARK 900 RELATED ID: 3VIF RELATED DB: PDB REMARK 900 RELATED ID: 3VIG RELATED DB: PDB REMARK 900 RELATED ID: 3VIH RELATED DB: PDB REMARK 900 RELATED ID: 3VII RELATED DB: PDB REMARK 900 RELATED ID: 3VIJ RELATED DB: PDB REMARK 900 RELATED ID: 3VIK RELATED DB: PDB REMARK 900 RELATED ID: 3VIM RELATED DB: PDB REMARK 900 RELATED ID: 3VIN RELATED DB: PDB REMARK 900 RELATED ID: 3VIO RELATED DB: PDB REMARK 900 RELATED ID: 3VIP RELATED DB: PDB DBREF 3VIL A 21 498 UNP Q8T0W7 Q8T0W7_9NEOP 21 498 SEQADV 3VIL MET A 20 UNP Q8T0W7 EXPRESSION TAG SEQADV 3VIL SER A 193 UNP Q8T0W7 GLU 193 ENGINEERED MUTATION SEQADV 3VIL LEU A 499 UNP Q8T0W7 EXPRESSION TAG SEQADV 3VIL GLU A 500 UNP Q8T0W7 EXPRESSION TAG SEQADV 3VIL HIS A 501 UNP Q8T0W7 EXPRESSION TAG SEQADV 3VIL HIS A 502 UNP Q8T0W7 EXPRESSION TAG SEQADV 3VIL HIS A 503 UNP Q8T0W7 EXPRESSION TAG SEQADV 3VIL HIS A 504 UNP Q8T0W7 EXPRESSION TAG SEQADV 3VIL HIS A 505 UNP Q8T0W7 EXPRESSION TAG SEQADV 3VIL HIS A 506 UNP Q8T0W7 EXPRESSION TAG SEQRES 1 A 487 MET ASP VAL ALA SER SER ASP THR VAL TYR THR PHE PRO SEQRES 2 A 487 ASP GLU PHE LYS LEU GLY ALA ALA THR ALA SER TYR GLN SEQRES 3 A 487 ILE GLU GLY ALA TRP ASP GLU ASN GLY LYS GLY PRO ASN SEQRES 4 A 487 ILE TRP ASP THR LEU THR HIS GLU HIS PRO ASP TYR VAL SEQRES 5 A 487 VAL ASP GLY ALA THR GLY ASP ILE ALA ASP ASP SER TYR SEQRES 6 A 487 HIS LEU TYR LYS GLU ASP VAL LYS ILE LEU LYS GLU LEU SEQRES 7 A 487 GLY ALA GLN VAL TYR ARG PHE SER ILE SER TRP ALA ARG SEQRES 8 A 487 VAL LEU PRO GLU GLY HIS ASP ASN ILE VAL ASN GLN ASP SEQRES 9 A 487 GLY ILE ASP TYR TYR ASN ASN LEU ILE ASN GLU LEU LEU SEQRES 10 A 487 ALA ASN GLY ILE GLU PRO MET VAL THR MET TYR HIS TRP SEQRES 11 A 487 ASP LEU PRO GLN ALA LEU GLN ASP LEU GLY GLY TRP PRO SEQRES 12 A 487 ASN LEU VAL LEU ALA LYS TYR SER GLU ASN TYR ALA ARG SEQRES 13 A 487 VAL LEU PHE LYS ASN PHE GLY ASP ARG VAL LYS LEU TRP SEQRES 14 A 487 LEU THR PHE ASN SER PRO LEU THR PHE MET ASP GLY TYR SEQRES 15 A 487 ALA SER GLU ILE GLY MET ALA PRO SER ILE ASN THR PRO SEQRES 16 A 487 GLY ILE GLY ASP TYR LEU ALA ALA HIS THR VAL ILE HIS SEQRES 17 A 487 ALA HIS ALA ARG ILE TYR HIS LEU TYR ASP GLN GLU PHE SEQRES 18 A 487 ARG ALA GLU GLN GLY GLY LYS VAL GLY ILE SER LEU ASN SEQRES 19 A 487 ILE ASN TRP CYS GLU PRO ALA THR ASN SER ALA GLU ASP SEQRES 20 A 487 ARG ALA SER CYS GLU ASN TYR GLN GLN PHE ASN LEU GLY SEQRES 21 A 487 LEU TYR ALA HIS PRO ILE PHE THR GLU GLU GLY ASP TYR SEQRES 22 A 487 PRO ALA VAL LEU LYS ASP ARG VAL SER ARG ASN SER ALA SEQRES 23 A 487 ASP GLU GLY TYR THR ASP SER ARG LEU PRO GLN PHE THR SEQRES 24 A 487 ALA GLU GLU VAL GLU TYR ILE ARG GLY THR HIS ASP PHE SEQRES 25 A 487 LEU GLY ILE ASN PHE TYR THR ALA LEU LEU GLY LYS SER SEQRES 26 A 487 GLY VAL GLU GLY TYR GLU PRO SER ARG TYR ARG ASP SER SEQRES 27 A 487 GLY VAL ILE LEU THR GLN ASP ALA ALA TRP PRO ILE SER SEQRES 28 A 487 ALA SER SER TRP LEU LYS VAL VAL PRO TRP GLY PHE ARG SEQRES 29 A 487 LYS GLU LEU ASN TRP ILE LYS ASN GLU TYR ASN ASN PRO SEQRES 30 A 487 PRO VAL PHE ILE THR GLU ASN GLY PHE SER ASP TYR GLY SEQRES 31 A 487 GLY LEU ASN ASP THR GLY ARG VAL HIS TYR TYR THR GLU SEQRES 32 A 487 HIS LEU LYS GLU MET LEU LYS ALA ILE HIS GLU ASP GLY SEQRES 33 A 487 VAL ASN VAL ILE GLY TYR THR ALA TRP SER LEU MET ASP SEQRES 34 A 487 ASN PHE GLU TRP LEU ARG GLY TYR SER GLU LYS PHE GLY SEQRES 35 A 487 ILE TYR ALA VAL ASP PHE GLU ASP PRO ALA ARG PRO ARG SEQRES 36 A 487 ILE PRO LYS GLU SER ALA LYS VAL LEU ALA GLU ILE MET SEQRES 37 A 487 ASN THR ARG LYS ILE PRO GLU ARG PHE ARG ASP LEU GLU SEQRES 38 A 487 HIS HIS HIS HIS HIS HIS HET SA0 A 507 20 HET SA9 A 508 9 HET EDO A 509 4 HET NA A 510 1 HET CL A 511 1 HET CL A 512 1 HETNAM SA0 2-(HYDROXYMETHYL)PHENYL BETA-D-GLUCOPYRANOSIDE HETNAM SA9 2-(HYDROXYMETHYL)PHENOL HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN SA0 SALICIN HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SA0 C13 H18 O7 FORMUL 3 SA9 C7 H8 O2 FORMUL 4 EDO C2 H6 O2 FORMUL 5 NA NA 1+ FORMUL 6 CL 2(CL 1-) FORMUL 8 HOH *669(H2 O) HELIX 1 1 ALA A 42 GLU A 47 1 6 HELIX 2 2 ASP A 51 LYS A 55 5 5 HELIX 3 3 ASN A 58 HIS A 67 1 10 HELIX 4 4 PRO A 68 ALA A 75 5 8 HELIX 5 5 ASP A 82 GLY A 98 1 17 HELIX 6 6 SER A 107 LEU A 112 1 6 HELIX 7 7 ASN A 121 ASN A 138 1 18 HELIX 8 8 PRO A 152 ASP A 157 1 6 HELIX 9 9 VAL A 165 GLY A 182 1 18 HELIX 10 10 SER A 193 MET A 198 1 6 HELIX 11 11 ASP A 199 ALA A 202 5 4 HELIX 12 12 ILE A 216 PHE A 240 1 25 HELIX 13 13 PHE A 240 GLY A 245 1 6 HELIX 14 14 SER A 263 LEU A 278 1 16 HELIX 15 15 LEU A 278 THR A 287 1 10 HELIX 16 16 PRO A 293 GLU A 307 1 15 HELIX 17 17 THR A 318 ARG A 326 1 9 HELIX 18 18 SER A 352 GLY A 358 1 7 HELIX 19 19 VAL A 378 ASN A 394 1 17 HELIX 20 20 ASP A 413 GLU A 433 1 21 HELIX 21 21 GLU A 451 GLY A 455 5 5 HELIX 22 22 LYS A 477 ARG A 490 1 14 HELIX 23 23 PRO A 493 ARG A 497 5 5 SHEET 1 A 9 LYS A 36 ALA A 40 0 SHEET 2 A 9 VAL A 101 SER A 105 1 O ARG A 103 N ALA A 39 SHEET 3 A 9 GLU A 141 TYR A 147 1 O THR A 145 N PHE A 104 SHEET 4 A 9 LEU A 187 ASN A 192 1 O LEU A 189 N MET A 146 SHEET 5 A 9 LYS A 247 ASN A 253 1 O SER A 251 N PHE A 191 SHEET 6 A 9 PHE A 331 ASN A 335 1 O GLY A 333 N ILE A 250 SHEET 7 A 9 VAL A 398 GLU A 402 1 O PHE A 399 N LEU A 332 SHEET 8 A 9 VAL A 438 TRP A 444 1 O ILE A 439 N VAL A 398 SHEET 9 A 9 LYS A 36 ALA A 40 1 N LYS A 36 O TYR A 441 SHEET 1 B 3 TRP A 256 PRO A 259 0 SHEET 2 B 3 ALA A 339 LYS A 343 1 O LEU A 340 N GLU A 258 SHEET 3 B 3 ILE A 360 THR A 362 -1 O THR A 362 N LEU A 341 SHEET 1 C 2 TYR A 463 VAL A 465 0 SHEET 2 C 2 ARG A 474 PRO A 476 -1 O ILE A 475 N ALA A 464 LINK NA NA A 510 O HOH A 823 1555 1555 3.16 LINK NA NA A 510 O HOH A 948 1555 1555 3.13 CISPEP 1 ALA A 208 PRO A 209 0 7.89 CISPEP 2 GLU A 350 PRO A 351 0 -4.81 CISPEP 3 TRP A 444 SER A 445 0 3.06 CRYST1 92.908 68.536 75.663 90.00 95.70 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010763 0.000000 0.001074 0.00000 SCALE2 0.000000 0.014591 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013282 0.00000