PDB Short entry for 3VOU HEADER TRANSPORT PROTEIN 10-FEB-12 3VOU TITLE THE CRYSTAL STRUCTURE OF NAK-NAVSULP CHIMERA CHANNEL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ION TRANSPORT 2 DOMAIN PROTEIN, VOLTAGE-GATED SODIUM COMPND 3 CHANNEL; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: CHIMERA PROTEIN OF ION TRANSPORT 2 DOMAIN PROTEIN COMPND 8 (UNIPROT A9VEV6) AND C-TERMINAL REGION (RESIDUES THR239 TO GLN263) COMPND 9 FROM VOLTAGE-GATED SODIUM CHANNEL (UNIPROT A3S9R1) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS WEIHENSTEPHANENSIS, SULFITOBACTER SP. SOURCE 3 NAS-14.1; SOURCE 4 ORGANISM_TAXID: 315730, 314267; SOURCE 5 STRAIN: KBAB4; SOURCE 6 GENE: BCERKBAB4_0590, NAS141_12386; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: KRX; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS 4-HELICAL BUNDLE, ION CHANNEL, MEMBRANE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.IRIE,T.SHIMOMURA,Y.FUJIYOSHI REVDAT 4 08-NOV-23 3VOU 1 REMARK SEQADV LINK REVDAT 3 16-AUG-17 3VOU 1 SOURCE REMARK REVDAT 2 07-AUG-13 3VOU 1 JRNL REMARK REVDAT 1 02-MAY-12 3VOU 0 JRNL AUTH K.IRIE,T.SHIMOMURA,Y.FUJIYOSHI JRNL TITL THE C-TERMINAL HELICAL BUNDLE OF THE TETRAMERIC PROKARYOTIC JRNL TITL 2 SODIUM CHANNEL ACCELERATES THE INACTIVATION RATE JRNL REF NAT COMMUN V. 3 793 2012 JRNL REFN ESSN 2041-1723 JRNL PMID 22531178 JRNL DOI 10.1038/NCOMMS1797 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 10367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.293 REMARK 3 R VALUE (WORKING SET) : 0.292 REMARK 3 FREE R VALUE : 0.322 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 536 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 771 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.3820 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : 0.4030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2150 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 101.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.26000 REMARK 3 B12 (A**2) : -0.09000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.019 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.476 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.447 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.685 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.902 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2193 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2966 ; 1.019 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 272 ; 5.215 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 77 ;31.953 ;22.468 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 387 ;19.891 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;12.802 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 363 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1554 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1362 ; 0.480 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2193 ; 0.876 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 831 ; 0.620 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 773 ; 1.141 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3VOU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000095314. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : SI 111 DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : MONOCHROMATOR 2ND SI:SAGITTAL REMARK 200 FOCUS, FLAT MIRROR:VERTICAL FOCUS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10367 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 28.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 41.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.1 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.65400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2AHY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19-21% POLYETHYLENE GLYCOL MONOMETHYL REMARK 280 ETHER 550, 0.05M MAGNESIUM NITRATE, 0.1M SODIUM CITRATE, PH 5.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.81467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.62933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 69.62933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.81467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -189.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 201 LIES ON A SPECIAL POSITION. REMARK 375 CO CO A 202 LIES ON A SPECIAL POSITION. REMARK 375 NA NA B 201 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLY A 140 REMARK 465 SER A 141 REMARK 465 LEU A 142 REMARK 465 VAL A 143 REMARK 465 PRO A 144 REMARK 465 ARG A 145 REMARK 465 MET B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 ASN B 101 REMARK 465 VAL B 102 REMARK 465 GLN B 103 REMARK 465 GLY B 140 REMARK 465 SER B 141 REMARK 465 LEU B 142 REMARK 465 VAL B 143 REMARK 465 PRO B 144 REMARK 465 ARG B 145 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 101 CG OD1 ND2 REMARK 470 VAL A 102 CG1 CG2 REMARK 470 GLN A 103 CG CD OE1 NE2 REMARK 470 ARG A 111 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 113 CG CD CE NZ REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 SER A 137 OG REMARK 470 GLN A 139 CG CD OE1 NE2 REMARK 470 ARG B 111 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 LYS B 113 CG CD CE NZ REMARK 470 GLU B 121 CG CD OE1 OE2 REMARK 470 GLU B 124 CG CD OE1 OE2 REMARK 470 GLU B 127 CG CD OE1 OE2 REMARK 470 GLU B 130 CG CD OE1 OE2 REMARK 470 GLN B 139 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 2 -38.41 -38.97 REMARK 500 THR A 31 -70.33 -60.88 REMARK 500 THR A 44 -80.34 -117.75 REMARK 500 VAL A 58 -72.65 -57.54 REMARK 500 THR A 63 13.01 53.84 REMARK 500 ASN A 68 -80.10 -123.11 REMARK 500 ARG A 138 -39.65 -133.74 REMARK 500 TRP B 19 7.60 -67.28 REMARK 500 SER B 43 -70.55 -66.20 REMARK 500 THR B 44 37.60 -94.86 REMARK 500 VAL B 45 -64.19 -144.20 REMARK 500 PRO B 50 30.45 -63.12 REMARK 500 LEU B 51 -32.07 -141.50 REMARK 500 VAL B 64 -77.30 -58.02 REMARK 500 ASN B 68 -71.88 -126.98 REMARK 500 SER B 137 31.76 -77.13 REMARK 500 ARG B 138 -66.87 -126.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 63 OG1 REMARK 620 2 THR B 63 OG1 94.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 63 O REMARK 620 2 VAL A 64 O 65.8 REMARK 620 3 THR B 63 O 70.4 71.4 REMARK 620 4 VAL B 64 O 124.4 71.0 63.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 202 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 136 NE2 REMARK 620 2 HIS B 136 NE2 95.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 201 DBREF 3VOU A 1 114 UNP A9VEV6 A9VEV6_BACWK 1 114 DBREF 3VOU A 115 139 UNP A3SUL8 A3SUL8_9RHOB 239 263 DBREF 3VOU B 1 114 UNP A9VEV6 A9VEV6_BACWK 1 114 DBREF 3VOU B 115 139 UNP A3SUL8 A3SUL8_9RHOB 239 263 SEQADV 3VOU MET A -2 UNP A9VEV6 EXPRESSION TAG SEQADV 3VOU GLY A -1 UNP A9VEV6 EXPRESSION TAG SEQADV 3VOU SER A 0 UNP A9VEV6 EXPRESSION TAG SEQADV 3VOU ILE A 5 UNP A9VEV6 MET 5 ENGINEERED MUTATION SEQADV 3VOU ASN A 110 UNP A9VEV6 LYS 110 ENGINEERED MUTATION SEQADV 3VOU GLY A 140 UNP A3SUL8 EXPRESSION TAG SEQADV 3VOU SER A 141 UNP A3SUL8 EXPRESSION TAG SEQADV 3VOU LEU A 142 UNP A3SUL8 EXPRESSION TAG SEQADV 3VOU VAL A 143 UNP A3SUL8 EXPRESSION TAG SEQADV 3VOU PRO A 144 UNP A3SUL8 EXPRESSION TAG SEQADV 3VOU ARG A 145 UNP A3SUL8 EXPRESSION TAG SEQADV 3VOU MET B -2 UNP A9VEV6 EXPRESSION TAG SEQADV 3VOU GLY B -1 UNP A9VEV6 EXPRESSION TAG SEQADV 3VOU SER B 0 UNP A9VEV6 EXPRESSION TAG SEQADV 3VOU ILE B 5 UNP A9VEV6 MET 5 ENGINEERED MUTATION SEQADV 3VOU ASN B 110 UNP A9VEV6 LYS 110 ENGINEERED MUTATION SEQADV 3VOU GLY B 140 UNP A3SUL8 EXPRESSION TAG SEQADV 3VOU SER B 141 UNP A3SUL8 EXPRESSION TAG SEQADV 3VOU LEU B 142 UNP A3SUL8 EXPRESSION TAG SEQADV 3VOU VAL B 143 UNP A3SUL8 EXPRESSION TAG SEQADV 3VOU PRO B 144 UNP A3SUL8 EXPRESSION TAG SEQADV 3VOU ARG B 145 UNP A3SUL8 EXPRESSION TAG SEQRES 1 A 148 MET GLY SER MET LEU SER PHE ILE LEU THR LEU LYS ARG SEQRES 2 A 148 MET LEU LYS ALA CYS LEU ARG ALA TRP LYS ASP LYS GLU SEQRES 3 A 148 PHE GLN VAL LEU PHE VAL LEU THR PHE LEU THR LEU THR SEQRES 4 A 148 SER GLY THR ILE PHE TYR SER THR VAL GLU GLY LEU ARG SEQRES 5 A 148 PRO LEU ASP ALA LEU TYR PHE SER VAL VAL THR LEU THR SEQRES 6 A 148 THR VAL GLY ASP GLY ASN PHE SER PRO GLN THR ASP PHE SEQRES 7 A 148 GLY LYS VAL PHE THR ILE LEU TYR ILE PHE ILE GLY ILE SEQRES 8 A 148 GLY LEU VAL PHE GLY PHE ILE HIS LYS LEU ALA VAL ASN SEQRES 9 A 148 VAL GLN LEU PRO SER ILE LEU SER ASN ARG LYS LYS GLU SEQRES 10 A 148 THR ASP ALA TYR ARG LEU GLU VAL MET GLU LYS LEU GLU SEQRES 11 A 148 ALA ILE GLU LYS LYS LEU ALA GLU HIS SER ARG GLN GLY SEQRES 12 A 148 SER LEU VAL PRO ARG SEQRES 1 B 148 MET GLY SER MET LEU SER PHE ILE LEU THR LEU LYS ARG SEQRES 2 B 148 MET LEU LYS ALA CYS LEU ARG ALA TRP LYS ASP LYS GLU SEQRES 3 B 148 PHE GLN VAL LEU PHE VAL LEU THR PHE LEU THR LEU THR SEQRES 4 B 148 SER GLY THR ILE PHE TYR SER THR VAL GLU GLY LEU ARG SEQRES 5 B 148 PRO LEU ASP ALA LEU TYR PHE SER VAL VAL THR LEU THR SEQRES 6 B 148 THR VAL GLY ASP GLY ASN PHE SER PRO GLN THR ASP PHE SEQRES 7 B 148 GLY LYS VAL PHE THR ILE LEU TYR ILE PHE ILE GLY ILE SEQRES 8 B 148 GLY LEU VAL PHE GLY PHE ILE HIS LYS LEU ALA VAL ASN SEQRES 9 B 148 VAL GLN LEU PRO SER ILE LEU SER ASN ARG LYS LYS GLU SEQRES 10 B 148 THR ASP ALA TYR ARG LEU GLU VAL MET GLU LYS LEU GLU SEQRES 11 B 148 ALA ILE GLU LYS LYS LEU ALA GLU HIS SER ARG GLN GLY SEQRES 12 B 148 SER LEU VAL PRO ARG HET NA A 201 1 HET CO A 202 1 HET NA B 201 1 HETNAM NA SODIUM ION HETNAM CO COBALT (II) ION FORMUL 3 NA 2(NA 1+) FORMUL 4 CO CO 2+ HELIX 1 1 MET A 1 LYS A 20 1 20 HELIX 2 2 ASP A 21 VAL A 45 1 25 HELIX 3 3 ARG A 49 THR A 62 1 14 HELIX 4 4 THR A 73 VAL A 100 1 28 HELIX 5 5 GLN A 103 SER A 137 1 35 HELIX 6 6 LEU B 2 TRP B 19 1 18 HELIX 7 7 ASP B 21 THR B 44 1 24 HELIX 8 8 LEU B 51 THR B 62 1 12 HELIX 9 9 THR B 73 LEU B 98 1 26 HELIX 10 10 SER B 106 SER B 137 1 32 LINK OG1 THR A 63 NA NA A 201 1555 1555 2.93 LINK O THR A 63 NA NA B 201 1555 1555 2.79 LINK O VAL A 64 NA NA B 201 1555 1555 2.50 LINK NE2 HIS A 136 CO CO A 202 1555 1555 2.08 LINK NA NA A 201 OG1 THR B 63 1555 1555 2.56 LINK CO CO A 202 NE2 HIS B 136 1555 1555 2.28 LINK O THR B 63 NA NA B 201 1555 1555 2.70 LINK O VAL B 64 NA NA B 201 1555 1555 2.37 SITE 1 AC1 2 THR A 63 THR B 63 SITE 1 AC2 2 HIS A 136 HIS B 136 SITE 1 AC3 4 THR A 63 VAL A 64 THR B 63 VAL B 64 CRYST1 104.227 104.227 104.444 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009594 0.005539 0.000000 0.00000 SCALE2 0.000000 0.011079 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009575 0.00000