PDB Short entry for 3VRY HEADER TRANSFERASE/TRANSFERASE INHIBITOR 21-APR-12 3VRY TITLE CRYSTAL STRUCTURE OF HCK COMPLEXED WITH A PYRROLO-PYRIMIDINE INHIBITOR TITLE 2 4-AMINO-5-(4-PHENOXYPHENYL)-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL- TITLE 3 CYCLOPENTANE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE HCK; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 81-526; COMPND 5 SYNONYM: HEMATOPOIETIC CELL KINASE, HEMOPOIETIC CELL KINASE, P59- COMPND 6 HCK/P60-HCK, P59HCK, P61HCK; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HCK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS TYROSINE KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.KURATANI,Y.TOMABECHI,H.NIWA,N.HANDA,S.YOKOYAMA REVDAT 1 01-MAY-13 3VRY 0 JRNL AUTH Y.SAITO,H.YUKI,M.KURATANI,Y.HASHIZUME,S.TAKAGI,T.HONMA, JRNL AUTH 2 A.TANAKA,M.SHIROUZU,J.MIKUNI,N.HANDA,I.OGAHARA,A.SONE, JRNL AUTH 3 Y.NAJIMA,Y.TOMABECHI,M.WAKIYAMA,N.UCHIDA, JRNL AUTH 4 M.TOMIZAWA-MURASAWA,A.KANEKO,S.TANAKA,N.SUZUKI,H.KAJITA, JRNL AUTH 5 Y.AOKI,O.OHARA,L.D.SHULTZ,T.FUKAMI,T.GOTO,S.TANIGUCHI, JRNL AUTH 6 S.YOKOYAMA,F.ISHIKAWA JRNL TITL A PYRROLO-PYRIMIDINE DERIVATIVE TARGETS HUMAN PRIMARY AML JRNL TITL 2 STEM CELLS IN VIVO JRNL REF SCI TRANSL MED V. 5 1RA52 2013 JRNL REFN ISSN 1946-6234 JRNL PMID 23596204 JRNL DOI 10.1126/SCITRANSLMED.3004387 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 44385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2219 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7522 - 6.2441 0.99 2733 144 0.2275 0.2797 REMARK 3 2 6.2441 - 4.9589 0.99 2666 140 0.2271 0.2627 REMARK 3 3 4.9589 - 4.3329 0.99 2658 140 0.1774 0.2263 REMARK 3 4 4.3329 - 3.9371 0.99 2655 140 0.1821 0.2342 REMARK 3 5 3.9371 - 3.6551 0.99 2654 139 0.2001 0.2550 REMARK 3 6 3.6551 - 3.4397 0.99 2626 139 0.2167 0.2274 REMARK 3 7 3.4397 - 3.2675 0.99 2620 138 0.2207 0.3070 REMARK 3 8 3.2675 - 3.1253 0.99 2660 139 0.2334 0.2975 REMARK 3 9 3.1253 - 3.0051 0.99 2606 138 0.2438 0.3291 REMARK 3 10 3.0051 - 2.9014 0.99 2629 138 0.2608 0.3270 REMARK 3 11 2.9014 - 2.8107 0.99 2617 138 0.2601 0.3604 REMARK 3 12 2.8107 - 2.7304 0.99 2609 137 0.2767 0.3334 REMARK 3 13 2.7304 - 2.6585 0.99 2614 138 0.2861 0.3651 REMARK 3 14 2.6585 - 2.5937 0.99 2573 135 0.2853 0.3521 REMARK 3 15 2.5937 - 2.5347 0.99 2632 139 0.2855 0.3323 REMARK 3 16 2.5347 - 2.4808 0.98 2614 137 0.3042 0.3784 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 28.43 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.54120 REMARK 3 B22 (A**2) : -0.55720 REMARK 3 B33 (A**2) : 0.01600 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.10130 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7224 REMARK 3 ANGLE : 1.210 9765 REMARK 3 CHIRALITY : 0.079 1034 REMARK 3 PLANARITY : 0.005 1240 REMARK 3 DIHEDRAL : 15.786 2725 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VRY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAY-12. REMARK 100 THE RCSB ID CODE IS RCSB095426. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI 511 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44396 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2C0T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG 6000, 180MM CALCIUM ACETATE, REMARK 280 18% GLYCEROL, 100MM TRIS, PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.94000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 78 REMARK 465 ALA A 79 REMARK 465 MET A 80 REMARK 465 GLY A 81 REMARK 465 SER A 82 REMARK 465 GLY A 83 REMARK 465 ILE A 84 REMARK 465 THR A 207 REMARK 465 LEU A 208 REMARK 465 ASP A 209 REMARK 465 ASN A 210 REMARK 465 GLY A 211 REMARK 465 GLY A 212 REMARK 465 GLU A 412 REMARK 465 ASP A 413 REMARK 465 ASN A 414 REMARK 465 GLU A 415 REMARK 465 TYR A 416 REMARK 465 THR A 417 REMARK 465 ALA A 418 REMARK 465 ARG A 419 REMARK 465 GLU A 420 REMARK 465 GLY A 421 REMARK 465 ALA A 422 REMARK 465 LYS A 423 REMARK 465 GLY B 78 REMARK 465 ALA B 79 REMARK 465 MET B 80 REMARK 465 GLY B 81 REMARK 465 SER B 82 REMARK 465 GLY B 83 REMARK 465 ILE B 84 REMARK 465 GLU B 412 REMARK 465 ASP B 413 REMARK 465 ASN B 414 REMARK 465 GLU B 415 REMARK 465 TYR B 416 REMARK 465 THR B 417 REMARK 465 ALA B 418 REMARK 465 ARG B 419 REMARK 465 GLU B 420 REMARK 465 GLY B 421 REMARK 465 ALA B 422 REMARK 465 LYS B 423 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 409 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 783 O HOH B 798 2.00 REMARK 500 OE1 GLU B 489 O HOH B 794 2.08 REMARK 500 O LYS A 232 NZ LYS A 241 2.14 REMARK 500 O HOH A 783 O HOH B 777 2.17 REMARK 500 OG1 THR A 181 NZ LYS A 204 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 98 -169.76 -107.55 REMARK 500 GLU A 114 139.88 -174.83 REMARK 500 ASP A 142 5.19 58.63 REMARK 500 SER A 243 -118.08 -69.62 REMARK 500 GLU A 256 139.46 -35.14 REMARK 500 LYS A 288 -1.14 64.10 REMARK 500 MET A 302 -53.50 -156.79 REMARK 500 SER A 303 119.21 52.65 REMARK 500 ARG A 385 -10.82 75.41 REMARK 500 ASP A 386 49.40 -143.91 REMARK 500 SER A 397 30.32 -92.01 REMARK 500 SER B 116 56.44 -115.60 REMARK 500 ASP B 142 -4.00 61.28 REMARK 500 LEU B 208 -154.47 -159.77 REMARK 500 SER B 243 -88.74 -97.99 REMARK 500 GLU B 256 134.28 -35.27 REMARK 500 LYS B 288 -3.05 72.16 REMARK 500 MET B 302 90.31 -58.36 REMARK 500 ARG B 385 -13.54 79.61 REMARK 500 ASP B 386 47.65 -145.08 REMARK 500 VAL B 410 37.67 -75.63 REMARK 500 TYR B 463 65.87 34.53 REMARK 500 ASN B 486 -1.91 68.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 817 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH B 753 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 763 DISTANCE = 5.80 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 524 O REMARK 620 2 GLU A 490 OE2 71.5 REMARK 620 3 GLU A 490 OE1 78.7 43.9 REMARK 620 4 PTR B 527 O 83.1 73.4 117.3 REMARK 620 5 HOH A 702 O 156.9 85.9 88.4 86.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 524 O REMARK 620 2 GLU B 490 OE1 73.7 REMARK 620 3 GLU B 490 OE2 64.0 43.6 REMARK 620 4 PTR A 527 O 75.0 110.5 66.9 REMARK 620 5 HOH B 793 O 153.1 83.8 108.9 128.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B43 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B43 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VRZ RELATED DB: PDB REMARK 900 RELATED ID: 3VS0 RELATED DB: PDB REMARK 900 RELATED ID: 3VS1 RELATED DB: PDB REMARK 900 RELATED ID: 3VS2 RELATED DB: PDB REMARK 900 RELATED ID: 3VS3 RELATED DB: PDB REMARK 900 RELATED ID: 3VS4 RELATED DB: PDB REMARK 900 RELATED ID: 3VS5 RELATED DB: PDB REMARK 900 RELATED ID: 3VS6 RELATED DB: PDB REMARK 900 RELATED ID: 3VS7 RELATED DB: PDB DBREF 3VRY A 86 531 UNP P08631 HCK_HUMAN 81 526 DBREF 3VRY B 86 531 UNP P08631 HCK_HUMAN 81 526 SEQADV 3VRY GLY A 78 UNP P08631 EXPRESSION TAG SEQADV 3VRY ALA A 79 UNP P08631 EXPRESSION TAG SEQADV 3VRY MET A 80 UNP P08631 EXPRESSION TAG SEQADV 3VRY GLY A 81 UNP P08631 EXPRESSION TAG SEQADV 3VRY SER A 82 UNP P08631 EXPRESSION TAG SEQADV 3VRY GLY A 83 UNP P08631 EXPRESSION TAG SEQADV 3VRY ILE A 84 UNP P08631 EXPRESSION TAG SEQADV 3VRY ARG A 85 UNP P08631 EXPRESSION TAG SEQADV 3VRY GLU A 528 UNP P08631 GLN 523 ENGINEERED MUTATION SEQADV 3VRY GLU A 529 UNP P08631 GLN 524 ENGINEERED MUTATION SEQADV 3VRY ILE A 530 UNP P08631 GLN 525 ENGINEERED MUTATION SEQADV 3VRY GLY B 78 UNP P08631 EXPRESSION TAG SEQADV 3VRY ALA B 79 UNP P08631 EXPRESSION TAG SEQADV 3VRY MET B 80 UNP P08631 EXPRESSION TAG SEQADV 3VRY GLY B 81 UNP P08631 EXPRESSION TAG SEQADV 3VRY SER B 82 UNP P08631 EXPRESSION TAG SEQADV 3VRY GLY B 83 UNP P08631 EXPRESSION TAG SEQADV 3VRY ILE B 84 UNP P08631 EXPRESSION TAG SEQADV 3VRY ARG B 85 UNP P08631 EXPRESSION TAG SEQADV 3VRY GLU B 528 UNP P08631 GLN 523 ENGINEERED MUTATION SEQADV 3VRY GLU B 529 UNP P08631 GLN 524 ENGINEERED MUTATION SEQADV 3VRY ILE B 530 UNP P08631 GLN 525 ENGINEERED MUTATION SEQRES 1 A 454 GLY ALA MET GLY SER GLY ILE ARG ILE ILE VAL VAL ALA SEQRES 2 A 454 LEU TYR ASP TYR GLU ALA ILE HIS HIS GLU ASP LEU SER SEQRES 3 A 454 PHE GLN LYS GLY ASP GLN MET VAL VAL LEU GLU GLU SER SEQRES 4 A 454 GLY GLU TRP TRP LYS ALA ARG SER LEU ALA THR ARG LYS SEQRES 5 A 454 GLU GLY TYR ILE PRO SER ASN TYR VAL ALA ARG VAL ASP SEQRES 6 A 454 SER LEU GLU THR GLU GLU TRP PHE PHE LYS GLY ILE SER SEQRES 7 A 454 ARG LYS ASP ALA GLU ARG GLN LEU LEU ALA PRO GLY ASN SEQRES 8 A 454 MET LEU GLY SER PHE MET ILE ARG ASP SER GLU THR THR SEQRES 9 A 454 LYS GLY SER TYR SER LEU SER VAL ARG ASP TYR ASP PRO SEQRES 10 A 454 ARG GLN GLY ASP THR VAL LYS HIS TYR LYS ILE ARG THR SEQRES 11 A 454 LEU ASP ASN GLY GLY PHE TYR ILE SER PRO ARG SER THR SEQRES 12 A 454 PHE SER THR LEU GLN GLU LEU VAL ASP HIS TYR LYS LYS SEQRES 13 A 454 GLY ASN ASP GLY LEU CYS GLN LYS LEU SER VAL PRO CYS SEQRES 14 A 454 MET SER SER LYS PRO GLN LYS PRO TRP GLU LYS ASP ALA SEQRES 15 A 454 TRP GLU ILE PRO ARG GLU SER LEU LYS LEU GLU LYS LYS SEQRES 16 A 454 LEU GLY ALA GLY GLN PHE GLY GLU VAL TRP MET ALA THR SEQRES 17 A 454 TYR ASN LYS HIS THR LYS VAL ALA VAL LYS THR MET LYS SEQRES 18 A 454 PRO GLY SER MET SER VAL GLU ALA PHE LEU ALA GLU ALA SEQRES 19 A 454 ASN VAL MET LYS THR LEU GLN HIS ASP LYS LEU VAL LYS SEQRES 20 A 454 LEU HIS ALA VAL VAL THR LYS GLU PRO ILE TYR ILE ILE SEQRES 21 A 454 THR GLU PHE MET ALA LYS GLY SER LEU LEU ASP PHE LEU SEQRES 22 A 454 LYS SER ASP GLU GLY SER LYS GLN PRO LEU PRO LYS LEU SEQRES 23 A 454 ILE ASP PHE SER ALA GLN ILE ALA GLU GLY MET ALA PHE SEQRES 24 A 454 ILE GLU GLN ARG ASN TYR ILE HIS ARG ASP LEU ARG ALA SEQRES 25 A 454 ALA ASN ILE LEU VAL SER ALA SER LEU VAL CYS LYS ILE SEQRES 26 A 454 ALA ASP PHE GLY LEU ALA ARG VAL ILE GLU ASP ASN GLU SEQRES 27 A 454 TYR THR ALA ARG GLU GLY ALA LYS PHE PRO ILE LYS TRP SEQRES 28 A 454 THR ALA PRO GLU ALA ILE ASN PHE GLY SER PHE THR ILE SEQRES 29 A 454 LYS SER ASP VAL TRP SER PHE GLY ILE LEU LEU MET GLU SEQRES 30 A 454 ILE VAL THR TYR GLY ARG ILE PRO TYR PRO GLY MET SER SEQRES 31 A 454 ASN PRO GLU VAL ILE ARG ALA LEU GLU ARG GLY TYR ARG SEQRES 32 A 454 MET PRO ARG PRO GLU ASN CYS PRO GLU GLU LEU TYR ASN SEQRES 33 A 454 ILE MET MET ARG CYS TRP LYS ASN ARG PRO GLU GLU ARG SEQRES 34 A 454 PRO THR PHE GLU TYR ILE GLN SER VAL LEU ASP ASP PHE SEQRES 35 A 454 TYR THR ALA THR GLU SER GLN PTR GLU GLU ILE PRO SEQRES 1 B 454 GLY ALA MET GLY SER GLY ILE ARG ILE ILE VAL VAL ALA SEQRES 2 B 454 LEU TYR ASP TYR GLU ALA ILE HIS HIS GLU ASP LEU SER SEQRES 3 B 454 PHE GLN LYS GLY ASP GLN MET VAL VAL LEU GLU GLU SER SEQRES 4 B 454 GLY GLU TRP TRP LYS ALA ARG SER LEU ALA THR ARG LYS SEQRES 5 B 454 GLU GLY TYR ILE PRO SER ASN TYR VAL ALA ARG VAL ASP SEQRES 6 B 454 SER LEU GLU THR GLU GLU TRP PHE PHE LYS GLY ILE SER SEQRES 7 B 454 ARG LYS ASP ALA GLU ARG GLN LEU LEU ALA PRO GLY ASN SEQRES 8 B 454 MET LEU GLY SER PHE MET ILE ARG ASP SER GLU THR THR SEQRES 9 B 454 LYS GLY SER TYR SER LEU SER VAL ARG ASP TYR ASP PRO SEQRES 10 B 454 ARG GLN GLY ASP THR VAL LYS HIS TYR LYS ILE ARG THR SEQRES 11 B 454 LEU ASP ASN GLY GLY PHE TYR ILE SER PRO ARG SER THR SEQRES 12 B 454 PHE SER THR LEU GLN GLU LEU VAL ASP HIS TYR LYS LYS SEQRES 13 B 454 GLY ASN ASP GLY LEU CYS GLN LYS LEU SER VAL PRO CYS SEQRES 14 B 454 MET SER SER LYS PRO GLN LYS PRO TRP GLU LYS ASP ALA SEQRES 15 B 454 TRP GLU ILE PRO ARG GLU SER LEU LYS LEU GLU LYS LYS SEQRES 16 B 454 LEU GLY ALA GLY GLN PHE GLY GLU VAL TRP MET ALA THR SEQRES 17 B 454 TYR ASN LYS HIS THR LYS VAL ALA VAL LYS THR MET LYS SEQRES 18 B 454 PRO GLY SER MET SER VAL GLU ALA PHE LEU ALA GLU ALA SEQRES 19 B 454 ASN VAL MET LYS THR LEU GLN HIS ASP LYS LEU VAL LYS SEQRES 20 B 454 LEU HIS ALA VAL VAL THR LYS GLU PRO ILE TYR ILE ILE SEQRES 21 B 454 THR GLU PHE MET ALA LYS GLY SER LEU LEU ASP PHE LEU SEQRES 22 B 454 LYS SER ASP GLU GLY SER LYS GLN PRO LEU PRO LYS LEU SEQRES 23 B 454 ILE ASP PHE SER ALA GLN ILE ALA GLU GLY MET ALA PHE SEQRES 24 B 454 ILE GLU GLN ARG ASN TYR ILE HIS ARG ASP LEU ARG ALA SEQRES 25 B 454 ALA ASN ILE LEU VAL SER ALA SER LEU VAL CYS LYS ILE SEQRES 26 B 454 ALA ASP PHE GLY LEU ALA ARG VAL ILE GLU ASP ASN GLU SEQRES 27 B 454 TYR THR ALA ARG GLU GLY ALA LYS PHE PRO ILE LYS TRP SEQRES 28 B 454 THR ALA PRO GLU ALA ILE ASN PHE GLY SER PHE THR ILE SEQRES 29 B 454 LYS SER ASP VAL TRP SER PHE GLY ILE LEU LEU MET GLU SEQRES 30 B 454 ILE VAL THR TYR GLY ARG ILE PRO TYR PRO GLY MET SER SEQRES 31 B 454 ASN PRO GLU VAL ILE ARG ALA LEU GLU ARG GLY TYR ARG SEQRES 32 B 454 MET PRO ARG PRO GLU ASN CYS PRO GLU GLU LEU TYR ASN SEQRES 33 B 454 ILE MET MET ARG CYS TRP LYS ASN ARG PRO GLU GLU ARG SEQRES 34 B 454 PRO THR PHE GLU TYR ILE GLN SER VAL LEU ASP ASP PHE SEQRES 35 B 454 TYR THR ALA THR GLU SER GLN PTR GLU GLU ILE PRO MODRES 3VRY PTR A 527 TYR O-PHOSPHOTYROSINE MODRES 3VRY PTR B 527 TYR O-PHOSPHOTYROSINE HET PTR A 527 16 HET PTR B 527 16 HET B43 A 601 28 HET CL A 602 1 HET CA A 603 1 HET CA B 601 1 HET B43 B 602 28 HET CL B 603 1 HETNAM PTR O-PHOSPHOTYROSINE HETNAM B43 4-AMINO-5-(4-PHENOXYPHENYL)-7H-PYRROLO[2,3-D]PYRIMIDIN- HETNAM 2 B43 7-YL-CYCLOPENTANE HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETSYN PTR PHOSPHONOTYROSINE HETSYN B43 7-CYCLOPENTYL-5-(4-PHENOXYPHENYL)-7H-PYRROLO[2,3- HETSYN 2 B43 D]PYRIMIDIN-4-AMINE FORMUL 1 PTR 2(C9 H12 N O6 P) FORMUL 3 B43 2(C23 H22 N4 O) FORMUL 4 CL 2(CL 1-) FORMUL 5 CA 2(CA 2+) FORMUL 9 HOH *237(H2 O) HELIX 1 1 SER A 143 GLU A 147 5 5 HELIX 2 2 SER A 155 LEU A 164 1 10 HELIX 3 3 THR A 223 LYS A 233 1 11 HELIX 4 4 PRO A 263 GLU A 265 5 3 HELIX 5 5 SER A 303 THR A 316 1 14 HELIX 6 6 SER A 345 LYS A 351 1 7 HELIX 7 7 SER A 352 LYS A 357 1 6 HELIX 8 8 PRO A 359 ARG A 380 1 22 HELIX 9 9 ARG A 388 ALA A 390 5 3 HELIX 10 10 PRO A 425 THR A 429 5 5 HELIX 11 11 ALA A 430 GLY A 437 1 8 HELIX 12 12 THR A 440 THR A 457 1 18 HELIX 13 13 SER A 467 GLY A 478 1 12 HELIX 14 14 PRO A 488 TRP A 499 1 12 HELIX 15 15 ARG A 502 ARG A 506 5 5 HELIX 16 16 THR A 508 ASP A 518 1 11 HELIX 17 17 ALA A 522 GLN A 526 5 5 HELIX 18 18 SER B 143 GLU B 147 5 5 HELIX 19 19 SER B 155 LEU B 164 1 10 HELIX 20 20 THR B 223 LYS B 232 1 10 HELIX 21 21 PRO B 263 GLU B 265 5 3 HELIX 22 22 SER B 303 LEU B 317 1 15 HELIX 23 23 SER B 345 SER B 352 1 8 HELIX 24 24 SER B 352 LYS B 357 1 6 HELIX 25 25 PRO B 359 ARG B 380 1 22 HELIX 26 26 ARG B 388 ALA B 390 5 3 HELIX 27 27 ALA B 430 GLY B 437 1 8 HELIX 28 28 THR B 440 THR B 457 1 18 HELIX 29 29 SER B 467 ARG B 477 1 11 HELIX 30 30 PRO B 488 TRP B 499 1 12 HELIX 31 31 ARG B 502 ARG B 506 5 5 HELIX 32 32 THR B 508 ASP B 518 1 11 HELIX 33 33 ALA B 522 GLN B 526 5 5 SHEET 1 A 5 GLU A 130 PRO A 134 0 SHEET 2 A 5 TRP A 119 SER A 124 -1 N ALA A 122 O GLY A 131 SHEET 3 A 5 GLN A 109 GLU A 115 -1 N LEU A 113 O LYS A 121 SHEET 4 A 5 ILE A 87 ALA A 90 -1 N VAL A 88 O MET A 110 SHEET 5 A 5 VAL A 138 ARG A 140 -1 O ALA A 139 N VAL A 89 SHEET 1 B 4 PHE A 150 PHE A 151 0 SHEET 2 B 4 PHE A 173 ASP A 177 1 O ILE A 175 N PHE A 151 SHEET 3 B 4 TYR A 185 ASP A 193 -1 O SER A 188 N MET A 174 SHEET 4 B 4 GLY A 197 ILE A 205 -1 O GLY A 197 N ASP A 193 SHEET 1 C 2 TYR A 214 SER A 216 0 SHEET 2 C 2 SER A 219 THR A 220 -1 O SER A 219 N SER A 216 SHEET 1 D 5 LEU A 267 ALA A 275 0 SHEET 2 D 5 GLY A 279 TYR A 286 -1 O VAL A 281 N LEU A 273 SHEET 3 D 5 THR A 290 MET A 297 -1 O VAL A 292 N ALA A 284 SHEET 4 D 5 TYR A 335 GLU A 339 -1 O THR A 338 N ALA A 293 SHEET 5 D 5 LEU A 325 VAL A 329 -1 N ALA A 327 O ILE A 337 SHEET 1 E 2 ILE A 392 VAL A 394 0 SHEET 2 E 2 CYS A 400 ILE A 402 -1 O LYS A 401 N LEU A 393 SHEET 1 F 5 GLU B 130 PRO B 134 0 SHEET 2 F 5 TRP B 119 SER B 124 -1 N ALA B 122 O GLY B 131 SHEET 3 F 5 GLN B 109 SER B 116 -1 N VAL B 111 O ARG B 123 SHEET 4 F 5 ILE B 87 ALA B 90 -1 N VAL B 88 O MET B 110 SHEET 5 F 5 VAL B 138 ARG B 140 -1 O ALA B 139 N VAL B 89 SHEET 1 G 6 PHE B 150 PHE B 151 0 SHEET 2 G 6 PHE B 173 ASP B 177 1 O ILE B 175 N PHE B 151 SHEET 3 G 6 TYR B 185 ASP B 193 -1 O SER B 188 N MET B 174 SHEET 4 G 6 GLY B 197 THR B 207 -1 O TYR B 203 N LEU B 187 SHEET 5 G 6 PHE B 213 SER B 216 -1 O TYR B 214 N ARG B 206 SHEET 6 G 6 SER B 219 PHE B 221 -1 O PHE B 221 N PHE B 213 SHEET 1 H 5 LEU B 267 GLY B 276 0 SHEET 2 H 5 GLY B 279 TYR B 286 -1 O VAL B 281 N GLY B 274 SHEET 3 H 5 THR B 290 MET B 297 -1 O VAL B 294 N TRP B 282 SHEET 4 H 5 TYR B 335 THR B 338 -1 O ILE B 336 N LYS B 295 SHEET 5 H 5 LEU B 325 VAL B 329 -1 N HIS B 326 O ILE B 337 SHEET 1 I 2 ILE B 392 VAL B 394 0 SHEET 2 I 2 CYS B 400 ILE B 402 -1 O LYS B 401 N LEU B 393 LINK C GLN A 526 N PTR A 527 1555 1555 1.33 LINK C PTR A 527 N GLU A 528 1555 1555 1.33 LINK C GLN B 526 N PTR B 527 1555 1555 1.32 LINK C PTR B 527 N GLU B 528 1555 1555 1.32 LINK O GLU B 524 CA CA A 603 1555 1555 2.66 LINK O GLU A 524 CA CA B 601 1555 1555 2.79 LINK OE2 GLU A 490 CA CA A 603 1555 1555 2.82 LINK OE1 GLU B 490 CA CA B 601 1555 1555 2.93 LINK OE2 GLU B 490 CA CA B 601 1555 1555 2.98 LINK O PTR A 527 CA CA B 601 1555 1555 3.01 LINK OE1 GLU A 490 CA CA A 603 1555 1555 3.06 LINK O PTR B 527 CA CA A 603 1555 1555 3.15 LINK CA CA A 603 O HOH A 702 1555 1555 2.91 LINK CA CA B 601 O HOH B 793 1555 1555 3.13 CISPEP 1 SER A 301 MET A 302 0 -4.23 CISPEP 2 GLU A 332 PRO A 333 0 -2.46 CISPEP 3 ASP B 209 ASN B 210 0 12.11 CISPEP 4 GLU B 332 PRO B 333 0 -5.72 SITE 1 AC1 12 LEU A 273 VAL A 281 ALA A 293 LYS A 295 SITE 2 AC1 12 VAL A 323 THR A 338 GLU A 339 MET A 341 SITE 3 AC1 12 LEU A 393 ASP A 404 PHE A 405 HOH A 701 SITE 1 AC2 3 ARG A 85 ARG A 123 ARG A 128 SITE 1 AC3 4 GLU A 490 HOH A 702 GLU B 524 PTR B 527 SITE 1 AC4 3 GLU A 524 PTR A 527 GLU B 490 SITE 1 AC5 12 LEU B 273 VAL B 281 ALA B 293 LYS B 295 SITE 2 AC5 12 VAL B 323 THR B 338 GLU B 339 MET B 341 SITE 3 AC5 12 LEU B 393 ASP B 404 PHE B 405 HOH B 711 SITE 1 AC6 2 ARG B 123 ARG B 128 CRYST1 48.590 73.880 178.470 90.00 95.84 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020580 0.000000 0.002105 0.00000 SCALE2 0.000000 0.013535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005632 0.00000