PDB Short entry for 3VVO HEADER TRANSPORT PROTEIN 27-JUL-12 3VVO TITLE CRYSTAL STRUCTURE OF MATE IN THE BENT CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ARCHAEAL-TYPE TRANSPORTER; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 STRAIN: JCM 8422; SOURCE 5 GENE: PF0708; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS MATE, MULTIDRUG TRANSPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.TANAKA,R.ISHITANI,O.NUREKI REVDAT 3 20-MAR-24 3VVO 1 REMARK REVDAT 2 29-JAN-14 3VVO 1 JRNL REVDAT 1 03-APR-13 3VVO 0 JRNL AUTH Y.TANAKA,C.J.HIPOLITO,A.D.MATURANA,K.ITO,T.KURODA,T.HIGUCHI, JRNL AUTH 2 T.KATOH,H.E.KATO,M.HATTORI,K.KUMAZAKI,T.TSUKAZAKI, JRNL AUTH 3 R.ISHITANI,H.SUGA,O.NUREKI JRNL TITL STRUCTURAL BASIS FOR THE DRUG EXTRUSION MECHANISM BY A MATE JRNL TITL 2 MULTIDRUG TRANSPORTER. JRNL REF NATURE V. 496 247 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 23535598 JRNL DOI 10.1038/NATURE12014 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 21175 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.490 REMARK 3 FREE R VALUE TEST SET COUNT : 2010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.6653 - 6.0228 0.99 1487 155 0.1836 0.1846 REMARK 3 2 6.0228 - 4.7858 1.00 1436 148 0.2112 0.2442 REMARK 3 3 4.7858 - 4.1824 0.60 860 94 0.1970 0.2346 REMARK 3 4 4.1824 - 3.8007 1.00 1447 149 0.1762 0.2472 REMARK 3 5 3.8007 - 3.5286 1.00 1412 148 0.1922 0.2730 REMARK 3 6 3.5286 - 3.3208 0.99 1418 145 0.2050 0.2928 REMARK 3 7 3.3208 - 3.1547 0.99 1415 148 0.2142 0.2604 REMARK 3 8 3.1547 - 3.0175 0.99 1397 153 0.2165 0.2606 REMARK 3 9 3.0175 - 2.9014 0.99 1426 138 0.2185 0.2855 REMARK 3 10 2.9014 - 2.8013 0.99 1385 148 0.2304 0.2840 REMARK 3 11 2.8013 - 2.7138 0.99 1395 155 0.2318 0.2920 REMARK 3 12 2.7138 - 2.6362 0.99 1408 142 0.2427 0.3122 REMARK 3 13 2.6362 - 2.5669 0.99 1400 148 0.2487 0.3299 REMARK 3 14 2.5669 - 2.5043 0.90 1279 139 0.2827 0.3334 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3469 REMARK 3 ANGLE : 0.879 4660 REMARK 3 CHIRALITY : 0.056 566 REMARK 3 PLANARITY : 0.003 556 REMARK 3 DIHEDRAL : 14.804 1248 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 4:49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 333.2714 -4.9240 168.0098 REMARK 3 T TENSOR REMARK 3 T11: 0.3162 T22: 0.2166 REMARK 3 T33: 0.3493 T12: -0.0669 REMARK 3 T13: 0.0126 T23: -0.0398 REMARK 3 L TENSOR REMARK 3 L11: 1.9306 L22: 1.2351 REMARK 3 L33: 9.0024 L12: -1.4061 REMARK 3 L13: -3.7029 L23: 1.6271 REMARK 3 S TENSOR REMARK 3 S11: 0.0461 S12: -0.0714 S13: 0.0009 REMARK 3 S21: 0.0375 S22: -0.0028 S23: -0.0488 REMARK 3 S31: 0.1537 S32: 0.0016 S33: 0.1409 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 50:130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 328.1207 11.4270 169.2336 REMARK 3 T TENSOR REMARK 3 T11: 0.3003 T22: 0.1636 REMARK 3 T33: 0.2363 T12: 0.0054 REMARK 3 T13: 0.0070 T23: 0.0437 REMARK 3 L TENSOR REMARK 3 L11: 0.5690 L22: 1.6279 REMARK 3 L33: 1.1820 L12: -0.3032 REMARK 3 L13: 0.8082 L23: 0.4103 REMARK 3 S TENSOR REMARK 3 S11: 0.0460 S12: 0.0532 S13: 0.1814 REMARK 3 S21: -0.1190 S22: 0.0699 S23: 0.0547 REMARK 3 S31: -0.2359 S32: -0.1463 S33: -0.0870 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 131:235 ) REMARK 3 ORIGIN FOR THE GROUP (A): 336.9520 6.5327 175.9716 REMARK 3 T TENSOR REMARK 3 T11: 0.3126 T22: 0.1754 REMARK 3 T33: 0.2407 T12: -0.0214 REMARK 3 T13: -0.0075 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.0227 L22: 1.1912 REMARK 3 L33: 2.9190 L12: 0.3622 REMARK 3 L13: -0.7836 L23: -0.4197 REMARK 3 S TENSOR REMARK 3 S11: 0.0122 S12: 0.0419 S13: 0.0715 REMARK 3 S21: -0.2530 S22: -0.0028 S23: -0.0249 REMARK 3 S31: -0.2066 S32: 0.0868 S33: 0.1062 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 236:269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 317.5424 8.1482 162.3594 REMARK 3 T TENSOR REMARK 3 T11: 0.3641 T22: 0.2876 REMARK 3 T33: 0.2300 T12: -0.0228 REMARK 3 T13: 0.0172 T23: -0.0278 REMARK 3 L TENSOR REMARK 3 L11: 7.7718 L22: 5.1939 REMARK 3 L33: 7.9686 L12: 5.5306 REMARK 3 L13: -6.9342 L23: -4.8731 REMARK 3 S TENSOR REMARK 3 S11: 0.3043 S12: -0.1946 S13: 0.0321 REMARK 3 S21: 0.2308 S22: -0.2178 S23: 0.1400 REMARK 3 S31: -0.1982 S32: -0.2944 S33: -0.0293 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 270:290 ) REMARK 3 ORIGIN FOR THE GROUP (A): 308.3424 -6.4753 173.7034 REMARK 3 T TENSOR REMARK 3 T11: 0.3226 T22: 0.5845 REMARK 3 T33: 0.3518 T12: 0.0452 REMARK 3 T13: 0.0393 T23: 0.0350 REMARK 3 L TENSOR REMARK 3 L11: 4.5023 L22: 2.9240 REMARK 3 L33: 5.4236 L12: -3.1869 REMARK 3 L13: -4.9248 L23: 3.2608 REMARK 3 S TENSOR REMARK 3 S11: 0.3775 S12: 0.0201 S13: 0.5603 REMARK 3 S21: -0.2101 S22: 0.2026 S23: 0.1625 REMARK 3 S31: -0.0063 S32: -0.6811 S33: -0.3736 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 291:340 ) REMARK 3 ORIGIN FOR THE GROUP (A): 326.3041 -10.1156 153.9193 REMARK 3 T TENSOR REMARK 3 T11: 0.2513 T22: 0.1663 REMARK 3 T33: 0.1822 T12: 0.0489 REMARK 3 T13: -0.0047 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 7.2126 L22: 3.2964 REMARK 3 L33: 7.3009 L12: 3.2626 REMARK 3 L13: -5.1087 L23: -2.9812 REMARK 3 S TENSOR REMARK 3 S11: -0.3865 S12: 0.0068 S13: -0.3930 REMARK 3 S21: -0.5226 S22: -0.0248 S23: -0.2201 REMARK 3 S31: 0.5991 S32: 0.1007 S33: 0.3735 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 341:420 ) REMARK 3 ORIGIN FOR THE GROUP (A): 310.8437 -6.1344 162.6175 REMARK 3 T TENSOR REMARK 3 T11: 0.4107 T22: 0.3686 REMARK 3 T33: 0.2630 T12: -0.0153 REMARK 3 T13: -0.0043 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 2.2395 L22: 3.0672 REMARK 3 L33: 0.5357 L12: -0.1688 REMARK 3 L13: 0.2631 L23: -1.2805 REMARK 3 S TENSOR REMARK 3 S11: -0.1816 S12: 0.0816 S13: -0.1349 REMARK 3 S21: -0.0518 S22: 0.2207 S23: 0.0584 REMARK 3 S31: -0.0500 S32: -0.4200 S33: -0.0654 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 421:457 ) REMARK 3 ORIGIN FOR THE GROUP (A): 313.8331 -4.2167 150.1876 REMARK 3 T TENSOR REMARK 3 T11: 0.3134 T22: 0.3994 REMARK 3 T33: 0.2006 T12: 0.0015 REMARK 3 T13: -0.0256 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 4.0392 L22: 1.6099 REMARK 3 L33: 4.2374 L12: -0.1520 REMARK 3 L13: -3.2110 L23: -0.3121 REMARK 3 S TENSOR REMARK 3 S11: 0.3131 S12: 0.2019 S13: 0.3640 REMARK 3 S21: -0.2418 S22: 0.1007 S23: 0.0519 REMARK 3 S31: -0.0601 S32: -0.1286 S33: -0.1289 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VVO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000095557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.900 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN COOLED DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21175 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.504 REMARK 200 RESOLUTION RANGE LOW (A) : 31.663 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.21600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 15.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% PEG 400, 50MM MES-NAOH, 20MM REMARK 280 CACL2, 100MM NASCN, PH 6.5, LIPDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.44650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.41750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.44650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.41750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 SER A 352 REMARK 465 GLU A 353 REMARK 465 SER A 354 REMARK 465 ALA A 355 REMARK 465 GLN A 356 REMARK 465 VAL A 357 REMARK 465 GLY A 458 REMARK 465 GLY A 459 REMARK 465 LYS A 460 REMARK 465 ARG A 461 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LYS A 18 CE NZ REMARK 470 GLU A 91 OE1 OE2 REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 ARG A 236 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 237 CG CD OE1 OE2 REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 GLU A 273 CG CD OE1 OE2 REMARK 470 ARG A 284 CD NE CZ NH1 NH2 REMARK 470 ILE A 290 CD1 REMARK 470 LYS A 325 CE NZ REMARK 470 ILE A 338 CD1 REMARK 470 ILE A 358 CG1 CG2 CD1 REMARK 470 LYS A 359 CG CD CE NZ REMARK 470 ASP A 361 CG OD1 OD2 REMARK 470 TYR A 412 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 413 CD1 REMARK 470 VAL A 415 CG1 CG2 REMARK 470 HIS A 416 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 418 OG1 CG2 REMARK 470 LEU A 422 CG CD1 CD2 REMARK 470 VAL A 439 CG1 CG2 REMARK 470 LYS A 453 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 268 N GLY A 272 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 341 30.28 -95.19 REMARK 500 THR A 368 -55.43 -124.31 REMARK 500 GLU A 391 69.25 -113.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 501 REMARK 610 OLC A 502 REMARK 610 OLC A 503 REMARK 610 OLC A 504 REMARK 610 OLC A 505 REMARK 610 OLC A 506 REMARK 610 OLC A 507 REMARK 610 OLC A 508 REMARK 610 OLC A 509 REMARK 610 OLC A 510 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 510 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VVN RELATED DB: PDB REMARK 900 RELATED ID: 3VVP RELATED DB: PDB REMARK 900 RELATED ID: 3VVQ RELATED DB: PDB REMARK 900 RELATED ID: 3VVR RELATED DB: PDB REMARK 900 RELATED ID: 3VVS RELATED DB: PDB DBREF 3VVO A 1 461 UNP Q8U2X0 Q8U2X0_PYRFU 1 461 SEQRES 1 A 461 MET SER GLU LYS THR THR LYS GLY VAL GLN LEU LEU ARG SEQRES 2 A 461 GLY ASP PRO LYS LYS ALA ILE VAL ARG LEU SER ILE PRO SEQRES 3 A 461 MET MET ILE GLY MET SER VAL GLN THR LEU TYR ASN LEU SEQRES 4 A 461 ALA ASP GLY ILE TRP VAL SER GLY LEU GLY PRO GLU SER SEQRES 5 A 461 LEU ALA ALA VAL GLY LEU PHE PHE PRO VAL PHE MET GLY SEQRES 6 A 461 ILE ILE ALA LEU ALA ALA GLY LEU GLY VAL GLY THR SER SEQRES 7 A 461 SER ALA ILE ALA ARG ARG ILE GLY ALA ARG ASP LYS GLU SEQRES 8 A 461 GLY ALA ASP ASN VAL ALA VAL HIS SER LEU ILE LEU SER SEQRES 9 A 461 LEU ILE LEU GLY VAL THR ILE THR ILE THR MET LEU PRO SEQRES 10 A 461 ALA ILE ASP SER LEU PHE ARG SER MET GLY ALA LYS GLY SEQRES 11 A 461 GLU ALA VAL GLU LEU ALA ILE GLU TYR ALA ARG VAL LEU SEQRES 12 A 461 LEU ALA GLY ALA PHE ILE ILE VAL PHE ASN ASN VAL GLY SEQRES 13 A 461 ASN GLY ILE LEU ARG GLY GLU GLY ASP ALA ASN ARG ALA SEQRES 14 A 461 MET LEU ALA MET VAL LEU GLY SER GLY LEU ASN ILE VAL SEQRES 15 A 461 LEU ASP PRO ILE PHE ILE TYR THR LEU GLY PHE GLY VAL SEQRES 16 A 461 VAL GLY ALA ALA TYR ALA THR LEU LEU SER MET VAL VAL SEQRES 17 A 461 THR SER LEU PHE ILE ALA TYR TRP LEU PHE VAL LYS ARG SEQRES 18 A 461 ASP THR TYR VAL ASP ILE THR LEU ARG ASP PHE SER PRO SEQRES 19 A 461 SER ARG GLU ILE LEU LYS ASP ILE LEU ARG VAL GLY LEU SEQRES 20 A 461 PRO SER SER LEU SER GLN LEU SER MET SER ILE ALA MET SEQRES 21 A 461 PHE PHE LEU ASN SER VAL ALA ILE THR ALA GLY GLY GLU SEQRES 22 A 461 ASN GLY VAL ALA VAL PHE THR SER ALA TRP ARG ILE THR SEQRES 23 A 461 MET LEU GLY ILE VAL PRO ILE LEU GLY MET ALA ALA ALA SEQRES 24 A 461 THR THR SER VAL THR GLY ALA ALA TYR GLY GLU ARG ASN SEQRES 25 A 461 VAL GLU LYS LEU GLU THR ALA TYR LEU TYR ALA ILE LYS SEQRES 26 A 461 ILE ALA PHE MET ILE GLU LEU ALA VAL VAL ALA PHE ILE SEQRES 27 A 461 MET LEU PHE ALA PRO GLN VAL ALA TYR LEU PHE THR TYR SEQRES 28 A 461 SER GLU SER ALA GLN VAL ILE LYS GLY ASP LEU ILE SER SEQRES 29 A 461 ALA LEU ARG THR LEU PRO VAL PHE LEU VAL LEU THR PRO SEQRES 30 A 461 PHE GLY MET MET THR SER ALA MET PHE GLN GLY ILE GLY SEQRES 31 A 461 GLU GLY GLU LYS SER LEU ILE LEU THR ILE PHE ARG THR SEQRES 32 A 461 LEU VAL MET GLN VAL GLY PHE ALA TYR ILE PHE VAL HIS SEQRES 33 A 461 TYR THR THR LEU GLY LEU ARG GLY VAL TRP ILE GLY ILE SEQRES 34 A 461 VAL ILE GLY ASN MET VAL ALA ALA ILE VAL GLY PHE LEU SEQRES 35 A 461 TRP GLY ARG MET ARG ILE SER ALA LEU LYS LYS THR SER SEQRES 36 A 461 ALA THR GLY GLY LYS ARG HET OLC A 501 9 HET OLC A 502 10 HET OLC A 503 18 HET OLC A 504 18 HET OLC A 505 18 HET OLC A 506 17 HET OLC A 507 14 HET OLC A 508 9 HET OLC A 509 14 HET OLC A 510 9 HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 OLC 10(C21 H40 O4) FORMUL 12 HOH *41(H2 O) HELIX 1 1 THR A 6 ARG A 13 1 8 HELIX 2 2 ASP A 15 GLY A 30 1 16 HELIX 3 3 MET A 31 GLN A 34 5 4 HELIX 4 4 THR A 35 SER A 46 1 12 HELIX 5 5 GLY A 49 PHE A 59 1 11 HELIX 6 6 PHE A 59 ALA A 87 1 29 HELIX 7 7 ASP A 89 LEU A 116 1 28 HELIX 8 8 ALA A 118 GLY A 127 1 10 HELIX 9 9 GLY A 130 ALA A 145 1 16 HELIX 10 10 GLY A 146 GLU A 163 1 18 HELIX 11 11 ASP A 165 TYR A 189 1 25 HELIX 12 12 PHE A 193 VAL A 219 1 27 HELIX 13 13 SER A 235 GLY A 289 1 55 HELIX 14 14 ILE A 290 GLU A 310 1 21 HELIX 15 15 ASN A 312 PHE A 341 1 30 HELIX 16 16 PHE A 341 THR A 350 1 10 HELIX 17 17 LYS A 359 ARG A 367 1 9 HELIX 18 18 THR A 368 VAL A 374 5 7 HELIX 19 19 LEU A 375 ILE A 389 1 15 HELIX 20 20 GLU A 391 LEU A 404 1 14 HELIX 21 21 VAL A 405 TYR A 417 1 13 HELIX 22 22 LEU A 422 THR A 457 1 36 CISPEP 1 ALA A 270 GLY A 271 0 7.65 SITE 1 AC1 2 PHE A 212 TYR A 215 SITE 1 AC2 2 ALA A 145 TYR A 200 SITE 1 AC3 6 LEU A 39 ILE A 43 TRP A 44 SER A 46 SITE 2 AC3 6 ILE A 181 OLC A 504 SITE 1 AC4 7 TRP A 44 GLY A 47 TYR A 189 THR A 190 SITE 2 AC4 7 LYS A 453 ALA A 456 OLC A 503 SITE 1 AC5 3 GLY A 192 PHE A 193 TYR A 200 SITE 1 AC6 4 PHE A 148 ILE A 227 THR A 228 LEU A 229 SITE 1 AC7 9 MET A 31 GLN A 34 ALA A 71 VAL A 75 SITE 2 AC7 9 ASN A 154 ARG A 161 ALA A 297 ALA A 298 SITE 3 AC7 9 THR A 301 SITE 1 AC8 6 PRO A 61 GLY A 65 LEU A 69 LEU A 251 SITE 2 AC8 6 LEU A 254 SER A 257 SITE 1 AC9 1 ALA A 214 CRYST1 152.893 58.835 71.491 90.00 93.18 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006541 0.000000 0.000364 0.00000 SCALE2 0.000000 0.016997 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014009 0.00000