PDB Short entry for 3VW7 HEADER SIGNALING PROTEIN/ANTAGONIST 07-AUG-12 3VW7 TITLE CRYSTAL STRUCTURE OF HUMAN PROTEASE-ACTIVATED RECEPTOR 1 (PAR1) BOUND TITLE 2 WITH ANTAGONIST VORAPAXAR AT 2.2 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEINASE-ACTIVATED RECEPTOR 1, LYSOZYME; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PAR-1, COAGULATION FACTOR II RECEPTOR, THROMBIN RECEPTOR, COMPND 5 ENDOLYSIN, LYSIS PROTEIN, MURAMIDASE; COMPND 6 EC: 3.2.1.17; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: CHIMERA PROTEIN OF RESIDUES 86-395 FORM PROTEINASE- COMPND 10 ACTIVATED RECEPTOR 1 (P25116, PAR1_HUMAN), LYZOSYME FROM COMPND 11 ENTEROBACTERIA PHAGE T4 (P00720, LYS_BPT4) AND RESIDUES 303-395 FROM COMPND 12 PROTEINASE-ACTIVATED RECEPTOR 1 (P25116, PAR1_HUMAN) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 10665; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS HIGH RESOLUTION STRUCTURE, PROTEASE-ACTIVATED RECEPTOR 1, INACTIVE KEYWDS 2 CONFORMATION, ANTAGONIST VORAPAXAR, G PROTEIN-COUPLED RECEPTOR, KEYWDS 3 SIGNALING PROTEIN, MEMBRANE PROTEIN, THROMBIN RECEPTOR-ANTAGONIST KEYWDS 4 COMPLEX, SIGNALING PROTEIN-ANTAGONIST COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.ZHANG,Y.SRINIVASAN,D.H.ARLOW,J.J.FUNG,D.PALMER,Y.ZHENG,H.F.GREEN, AUTHOR 2 A.PANDEY,R.O.DROR,D.E.SHAW,W.I.WEIS,S.R.COUGHLIN,B.K.KOBILKA REVDAT 4 22-NOV-17 3VW7 1 REMARK REVDAT 3 16-AUG-17 3VW7 1 SOURCE REMARK REVDAT 2 14-AUG-13 3VW7 1 JRNL REVDAT 1 12-DEC-12 3VW7 0 JRNL AUTH C.ZHANG,Y.SRINIVASAN,D.H.ARLOW,J.J.FUNG,D.PALMER,Y.ZHENG, JRNL AUTH 2 H.F.GREEN,A.PANDEY,R.O.DROR,D.E.SHAW,W.I.WEIS,S.R.COUGHLIN, JRNL AUTH 3 B.K.KOBILKA JRNL TITL HIGH-RESOLUTION CRYSTAL STRUCTURE OF HUMAN JRNL TITL 2 PROTEASE-ACTIVATED RECEPTOR 1 JRNL REF NATURE V. 492 387 2012 JRNL REFN ISSN 0028-0836 JRNL PMID 23222541 JRNL DOI 10.1038/NATURE11701 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 3 NUMBER OF REFLECTIONS : 25921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1306 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.2755 - 4.5692 0.97 3117 158 0.2078 0.1828 REMARK 3 2 4.5692 - 3.6291 0.96 2894 161 0.1840 0.2074 REMARK 3 3 3.6291 - 3.1711 0.97 2922 143 0.2116 0.2553 REMARK 3 4 3.1711 - 2.8814 0.95 2850 159 0.2233 0.2713 REMARK 3 5 2.8814 - 2.6751 0.93 2761 165 0.2186 0.2455 REMARK 3 6 2.6751 - 2.5175 0.92 2721 133 0.2307 0.2337 REMARK 3 7 2.5175 - 2.3915 0.89 2627 141 0.2508 0.2611 REMARK 3 8 2.3915 - 2.2874 0.85 2533 136 0.2846 0.3101 REMARK 3 9 2.2874 - 2.1994 0.75 2190 110 0.3184 0.3808 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 59.43 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 25.20100 REMARK 3 B22 (A**2) : -8.80180 REMARK 3 B33 (A**2) : -16.39930 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3809 REMARK 3 ANGLE : 0.948 5111 REMARK 3 CHIRALITY : 0.060 586 REMARK 3 PLANARITY : 0.006 611 REMARK 3 DIHEDRAL : 14.965 1453 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -4.0967 -8.5829 27.7598 REMARK 3 T TENSOR REMARK 3 T11: 0.2563 T22: 0.2252 REMARK 3 T33: 0.2419 T12: 0.0145 REMARK 3 T13: 0.0126 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.1412 L22: 0.1779 REMARK 3 L33: 0.1878 L12: 0.0366 REMARK 3 L13: 0.0877 L23: -0.1284 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: 0.0371 S13: -0.0278 REMARK 3 S21: -0.0658 S22: 0.0116 S23: 0.0405 REMARK 3 S31: 0.0231 S32: 0.0034 S33: -0.0030 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VW7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000095576. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.0-6.5 REMARK 200 NUMBER OF CRYSTALS USED : 18 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27181 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.57500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX (PHASER) REMARK 200 STARTING MODEL: PDB CODE 3ODU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1-0.2M SODIUM CHLORIDE, 100MM SODIUM REMARK 280 PHOSPHATE PH 6.0-6.5, 25%-35% PEG 300, LIPIDIC CUBIC PHASE (IN REMARK 280 MESO PHASE), TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.02200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.09350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.73000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 86.09350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.02200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.73000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 83 REMARK 465 GLY A 84 REMARK 465 THR A 85 REMARK 465 ALA A 86 REMARK 465 PHE A 87 REMARK 465 ILE A 88 REMARK 465 SER A 89 REMARK 465 GLU A 90 REMARK 465 GLN A 209 REMARK 465 SER A 210 REMARK 465 LEU A 211 REMARK 465 SER A 212 REMARK 465 TRP A 213 REMARK 465 GLN A 379 REMARK 465 ARG A 380 REMARK 465 TYR A 381 REMARK 465 VAL A 382 REMARK 465 TYR A 383 REMARK 465 SER A 384 REMARK 465 ILE A 385 REMARK 465 LEU A 386 REMARK 465 CYS A 387 REMARK 465 CYS A 388 REMARK 465 LYS A 389 REMARK 465 GLU A 390 REMARK 465 SER A 391 REMARK 465 SER A 392 REMARK 465 ASP A 393 REMARK 465 PRO A 394 REMARK 465 SER A 395 REMARK 465 CYS A 396 REMARK 465 TYR A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 465 HIS A 407 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 132 CD CE NZ REMARK 480 LEU A 216 CD1 CD2 REMARK 480 LEU A 297 CG CD1 CD2 REMARK 480 TYR A 1024 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 LYS A 1048 CD CE NZ REMARK 480 ARG A 1137 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 1147 CD CE NZ REMARK 480 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 1020 N GLY A 1023 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A1124 C ARG A1125 N 0.213 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 103 -63.66 -129.81 REMARK 500 MET A 131 -30.43 -34.49 REMARK 500 TYR A 206 77.41 -116.19 REMARK 500 LEU A1033 -66.42 -90.81 REMARK 500 PHE A1114 33.18 -97.96 REMARK 500 LYS A1124 10.12 83.23 REMARK 500 SER A 338 -78.10 -102.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A1125 14.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 OLC A 2002 REMARK 615 OLC A 2003 REMARK 615 OLC A 2004 REMARK 615 OLC A 2006 REMARK 615 OLC A 2010 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A2012 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A3065 O REMARK 620 2 HOH A3066 O 112.2 REMARK 620 3 SER A 189 OG 83.6 97.5 REMARK 620 4 ASP A 148 OD2 84.5 158.3 98.1 REMARK 620 5 ASP A 367 OD2 117.2 82.5 157.7 77.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VPX A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 2007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 2008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 2009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 2010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 2011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 2012 DBREF 3VW7 A 86 301 UNP P25116 PAR1_HUMAN 86 301 DBREF 3VW7 A 1002 1161 UNP P00720 LYS_BPT4 2 161 DBREF 3VW7 A 303 395 UNP P25116 PAR1_HUMAN 303 395 SEQADV 3VW7 SER A 83 UNP P25116 EXPRESSION TAG SEQADV 3VW7 GLY A 84 UNP P25116 EXPRESSION TAG SEQADV 3VW7 THR A 85 UNP P25116 EXPRESSION TAG SEQADV 3VW7 GLY A 250 UNP P25116 ASN 250 ENGINEERED MUTATION SEQADV 3VW7 SER A 259 UNP P25116 ASN 259 ENGINEERED MUTATION SEQADV 3VW7 ASN A 1020 UNP P00720 ASP 20 ENGINEERED MUTATION SEQADV 3VW7 THR A 1054 UNP P00720 CYS 54 ENGINEERED MUTATION SEQADV 3VW7 ALA A 1097 UNP P00720 CYS 97 ENGINEERED MUTATION SEQADV 3VW7 CYS A 396 UNP P25116 EXPRESSION TAG SEQADV 3VW7 TYR A 397 UNP P25116 EXPRESSION TAG SEQADV 3VW7 HIS A 398 UNP P25116 EXPRESSION TAG SEQADV 3VW7 HIS A 399 UNP P25116 EXPRESSION TAG SEQADV 3VW7 HIS A 400 UNP P25116 EXPRESSION TAG SEQADV 3VW7 HIS A 401 UNP P25116 EXPRESSION TAG SEQADV 3VW7 HIS A 402 UNP P25116 EXPRESSION TAG SEQADV 3VW7 HIS A 403 UNP P25116 EXPRESSION TAG SEQADV 3VW7 HIS A 404 UNP P25116 EXPRESSION TAG SEQADV 3VW7 HIS A 405 UNP P25116 EXPRESSION TAG SEQADV 3VW7 HIS A 406 UNP P25116 EXPRESSION TAG SEQADV 3VW7 HIS A 407 UNP P25116 EXPRESSION TAG SEQRES 1 A 484 SER GLY THR ALA PHE ILE SER GLU ASP ALA SER GLY TYR SEQRES 2 A 484 LEU THR SER SER TRP LEU THR LEU PHE VAL PRO SER VAL SEQRES 3 A 484 TYR THR GLY VAL PHE VAL VAL SER LEU PRO LEU ASN ILE SEQRES 4 A 484 MET ALA ILE VAL VAL PHE ILE LEU LYS MET LYS VAL LYS SEQRES 5 A 484 LYS PRO ALA VAL VAL TYR MET LEU HIS LEU ALA THR ALA SEQRES 6 A 484 ASP VAL LEU PHE VAL SER VAL LEU PRO PHE LYS ILE SER SEQRES 7 A 484 TYR TYR PHE SER GLY SER ASP TRP GLN PHE GLY SER GLU SEQRES 8 A 484 LEU CYS ARG PHE VAL THR ALA ALA PHE TYR CYS ASN MET SEQRES 9 A 484 TYR ALA SER ILE LEU LEU MET THR VAL ILE SER ILE ASP SEQRES 10 A 484 ARG PHE LEU ALA VAL VAL TYR PRO MET GLN SER LEU SER SEQRES 11 A 484 TRP ARG THR LEU GLY ARG ALA SER PHE THR CYS LEU ALA SEQRES 12 A 484 ILE TRP ALA LEU ALA ILE ALA GLY VAL VAL PRO LEU LEU SEQRES 13 A 484 LEU LYS GLU GLN THR ILE GLN VAL PRO GLY LEU GLY ILE SEQRES 14 A 484 THR THR CYS HIS ASP VAL LEU SER GLU THR LEU LEU GLU SEQRES 15 A 484 GLY TYR TYR ALA TYR TYR PHE SER ALA PHE SER ALA VAL SEQRES 16 A 484 PHE PHE PHE VAL PRO LEU ILE ILE SER THR VAL CYS TYR SEQRES 17 A 484 VAL SER ILE ILE ARG CYS LEU SER SER SER ALA ASN ILE SEQRES 18 A 484 PHE GLU MET LEU ARG ILE ASP GLU GLY LEU ARG LEU LYS SEQRES 19 A 484 ILE TYR LYS ASN THR GLU GLY TYR TYR THR ILE GLY ILE SEQRES 20 A 484 GLY HIS LEU LEU THR LYS SER PRO SER LEU ASN ALA ALA SEQRES 21 A 484 LYS SER GLU LEU ASP LYS ALA ILE GLY ARG ASN THR ASN SEQRES 22 A 484 GLY VAL ILE THR LYS ASP GLU ALA GLU LYS LEU PHE ASN SEQRES 23 A 484 GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE LEU ARG ASN SEQRES 24 A 484 ALA LYS LEU LYS PRO VAL TYR ASP SER LEU ASP ALA VAL SEQRES 25 A 484 ARG ARG ALA ALA LEU ILE ASN MET VAL PHE GLN MET GLY SEQRES 26 A 484 GLU THR GLY VAL ALA GLY PHE THR ASN SER LEU ARG MET SEQRES 27 A 484 LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA VAL ASN LEU SEQRES 28 A 484 ALA LYS SER ARG TRP TYR ASN GLN THR PRO ASN ARG ALA SEQRES 29 A 484 LYS ARG VAL ILE THR THR PHE ARG THR GLY THR TRP ASP SEQRES 30 A 484 ALA TYR ALA ASN ARG SER LYS LYS SER ARG ALA LEU PHE SEQRES 31 A 484 LEU SER ALA ALA VAL PHE CYS ILE PHE ILE ILE CYS PHE SEQRES 32 A 484 GLY PRO THR ASN VAL LEU LEU ILE ALA HIS TYR SER PHE SEQRES 33 A 484 LEU SER HIS THR SER THR THR GLU ALA ALA TYR PHE ALA SEQRES 34 A 484 TYR LEU LEU CYS VAL CYS VAL SER SER ILE SER CYS CYS SEQRES 35 A 484 ILE ASP PRO LEU ILE TYR TYR TYR ALA SER SER GLU CYS SEQRES 36 A 484 GLN ARG TYR VAL TYR SER ILE LEU CYS CYS LYS GLU SER SEQRES 37 A 484 SER ASP PRO SER CYS TYR HIS HIS HIS HIS HIS HIS HIS SEQRES 38 A 484 HIS HIS HIS HET VPX A2001 36 HET OLC A2002 25 HET OLC A2003 25 HET OLC A2004 25 HET OLC A2005 25 HET OLC A2006 25 HET OLC A2007 25 HET OLC A2008 25 HET OLC A2009 25 HET OLC A2010 25 HET CL A2011 1 HET NA A2012 1 HETNAM VPX ETHYL [(1R,3AR,4AR,6R,8AR,9S,9AS)-9-{(E)-2-[5-(3- HETNAM 2 VPX FLUOROPHENYL)PYRIDIN-2-YL]ETHENYL}-1-METHYL-3- HETNAM 3 VPX OXODODECAHYDRONAPHTHO[2,3-C]FURAN-6-YL]CARBAMATE HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN VPX VORAPAXAR HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 VPX C29 H33 F N2 O4 FORMUL 3 OLC 9(C21 H40 O4) FORMUL 12 CL CL 1- FORMUL 13 NA NA 1+ FORMUL 14 HOH *91(H2 O) HELIX 1 1 ASP A 91 THR A 97 1 7 HELIX 2 2 SER A 98 LEU A 103 1 6 HELIX 3 3 LEU A 103 MET A 131 1 29 HELIX 4 4 LYS A 132 LYS A 134 5 3 HELIX 5 5 LYS A 135 SER A 153 1 19 HELIX 6 6 VAL A 154 SER A 164 1 11 HELIX 7 7 GLY A 171 TYR A 206 1 36 HELIX 8 8 THR A 215 LEU A 239 1 25 HELIX 9 9 GLU A 264 LEU A 297 1 34 HELIX 10 10 ASN A 1002 GLY A 1012 1 11 HELIX 11 11 SER A 1038 GLY A 1051 1 14 HELIX 12 12 THR A 1059 ARG A 1080 1 22 HELIX 13 13 LEU A 1084 ASP A 1089 1 6 HELIX 14 14 ASP A 1092 GLY A 1113 1 22 HELIX 15 15 PHE A 1114 GLN A 1123 1 10 HELIX 16 16 ARG A 1125 ALA A 1134 1 10 HELIX 17 17 SER A 1136 THR A 1142 1 7 HELIX 18 18 THR A 1142 GLY A 1156 1 15 HELIX 19 19 TRP A 1158 ASN A 304 1 6 HELIX 20 20 ASN A 304 CYS A 325 1 22 HELIX 21 21 PHE A 326 PHE A 339 1 14 HELIX 22 22 THR A 346 SER A 361 1 16 HELIX 23 23 ILE A 362 ALA A 374 1 13 SHEET 1 A 2 THR A 243 VAL A 246 0 SHEET 2 A 2 ILE A 251 CYS A 254 -1 O ILE A 251 N VAL A 246 SHEET 1 B 3 ARG A1014 LYS A1019 0 SHEET 2 B 3 TYR A1025 GLY A1028 -1 O GLY A1028 N ARG A1014 SHEET 3 B 3 HIS A1031 THR A1034 -1 O LEU A1033 N TYR A1025 SSBOND 1 CYS A 175 CYS A 254 1555 1555 2.04 LINK NA NA A2012 O HOH A3065 1555 1555 2.33 LINK NA NA A2012 O HOH A3066 1555 1555 2.43 LINK OG SER A 189 NA NA A2012 1555 1555 2.57 LINK OD2 ASP A 148 NA NA A2012 1555 1555 2.82 LINK OD2 ASP A 367 NA NA A2012 1555 1555 2.40 SITE 1 AC1 16 TYR A 183 TYR A 187 PRO A 236 HIS A 255 SITE 2 AC1 16 ASP A 256 VAL A 257 LEU A 258 PHE A 271 SITE 3 AC1 16 ARG A1080 LEU A 332 LEU A 333 TYR A 337 SITE 4 AC1 16 ALA A 349 TYR A 350 TYR A 353 HOH A3004 SITE 1 AC2 5 PHE A 157 TYR A 206 ILE A 284 ARG A 295 SITE 2 AC2 5 OLC A2003 SITE 1 AC3 4 SER A 160 SER A 164 OLC A2002 OLC A2004 SITE 1 AC4 10 PHE A 113 PRO A 156 SER A 160 PHE A 163 SITE 2 AC4 10 SER A 164 LEU A 202 LEU A 229 PHE A 278 SITE 3 AC4 10 OLC A2003 OLC A2010 SITE 1 AC5 8 MET A 122 VAL A 126 PHE A 127 CYS A 365 SITE 2 AC5 8 PRO A 368 TYR A 371 TYR A 372 SER A 375 SITE 1 AC6 6 TRP A 100 PRO A 328 ALA A 348 PHE A 351 SITE 2 AC6 6 CYS A 356 HOH A3067 SITE 1 AC7 6 GLY A 327 PRO A 328 THR A 343 THR A 346 SITE 2 AC7 6 ALA A 348 CYS A 356 SITE 1 AC8 5 VAL A 139 HIS A 143 SER A 220 LEU A 224 SITE 2 AC8 5 ALA A 228 SITE 1 AC9 4 PRO A 236 LYS A 240 TYR A 270 PHE A 271 SITE 1 BC1 4 PHE A 163 PHE A 221 THR A 222 OLC A2004 SITE 1 BC2 2 LYS A 135 LYS A 307 SITE 1 BC3 6 LEU A 144 ASP A 148 SER A 189 ASP A 367 SITE 2 BC3 6 HOH A3065 HOH A3066 CRYST1 44.044 71.460 172.187 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022705 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013994 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005808 0.00000