PDB Short entry for 3W1Y HEADER TRANSPORT PROTEIN/RIBOSOMAL PROTEIN 23-NOV-12 3W1Y TITLE CRYSTAL STRUCTURE OF T BRUCEI ATG8.2 IN COMPLEX WITH E COLI S10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICROTUBULE-ASSOCIATED PROTEIN 1A/1B, LIGHT CHAIN 3; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 30S RIBOSOMAL PROTEIN S10; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 3 ORGANISM_TAXID: 999953; SOURCE 4 STRAIN: 927/4 GUTAT10.1; SOURCE 5 GENE: TB927.7.3320; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 10 ORGANISM_TAXID: 83333; SOURCE 11 STRAIN: K12; SOURCE 12 GENE: RPSJ, NUSE, B3321, JW3283; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AUTOPHAGE PROTEIN 8, AUTOPHAGE PROTEIN 12, UBIQUITIN FOLD, TRANSPORT KEYWDS 2 PROTEIN-RIBOSOMAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.A.YUAN,C.WANG REVDAT 2 08-NOV-23 3W1Y 1 SEQADV REVDAT 1 27-NOV-13 3W1Y 0 JRNL AUTH Y.A.YUAN,C.WANG JRNL TITL CRYSTAL STRUCTURE OF T BRUCEI ATG8.2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 15654 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 836 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1146 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2541 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.67000 REMARK 3 B22 (A**2) : 1.00000 REMARK 3 B33 (A**2) : -1.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.48000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.337 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.171 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.219 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2588 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3495 ; 1.399 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 308 ; 6.194 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;34.265 ;22.578 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 457 ;17.949 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;15.536 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 391 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1961 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 980 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1730 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 107 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.149 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1615 ; 0.863 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2537 ; 1.476 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1085 ; 2.216 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 958 ; 3.483 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 132 REMARK 3 ORIGIN FOR THE GROUP (A): 6.1861 -3.3698 27.4151 REMARK 3 T TENSOR REMARK 3 T11: -0.0760 T22: -0.1184 REMARK 3 T33: -0.1044 T12: -0.0172 REMARK 3 T13: 0.0102 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 1.4235 L22: 1.2060 REMARK 3 L33: 1.0761 L12: -0.5596 REMARK 3 L13: 0.3633 L23: 0.3698 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: -0.0282 S13: -0.0675 REMARK 3 S21: 0.0790 S22: 0.0229 S23: 0.0419 REMARK 3 S31: 0.0710 S32: 0.0012 S33: -0.0501 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 131 REMARK 3 ORIGIN FOR THE GROUP (A): 15.4135 -3.0486 -3.1702 REMARK 3 T TENSOR REMARK 3 T11: -0.1422 T22: -0.0766 REMARK 3 T33: -0.1521 T12: 0.0011 REMARK 3 T13: -0.0026 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 4.5060 L22: 0.5568 REMARK 3 L33: 3.5029 L12: 0.1274 REMARK 3 L13: -2.8060 L23: -0.0295 REMARK 3 S TENSOR REMARK 3 S11: 0.1141 S12: -0.3133 S13: 0.1170 REMARK 3 S21: -0.1112 S22: -0.0439 S23: -0.0049 REMARK 3 S31: -0.0233 S32: 0.2631 S33: -0.0701 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 103 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5234 -27.8921 16.6729 REMARK 3 T TENSOR REMARK 3 T11: -0.1315 T22: -0.1366 REMARK 3 T33: -0.0665 T12: -0.0017 REMARK 3 T13: -0.0010 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 3.8751 L22: 1.0263 REMARK 3 L33: 2.7261 L12: -0.6650 REMARK 3 L13: -2.2584 L23: 0.3857 REMARK 3 S TENSOR REMARK 3 S11: 0.0369 S12: 0.1549 S13: 0.1541 REMARK 3 S21: 0.1985 S22: -0.0747 S23: 0.1569 REMARK 3 S31: 0.0594 S32: 0.0042 S33: 0.0379 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3W1Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000095783. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15654 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3H9D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, MPD, HEPES, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.59850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -23.98491 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 63.24044 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 24.02709 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 30.59850 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 63.24044 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 ALA A 40 REMARK 465 ALA A 41 REMARK 465 SER A 42 REMARK 465 ALA A 43 REMARK 465 SER A 44 REMARK 465 THR A 45 REMARK 465 PRO A 46 REMARK 465 ARG A 47 REMARK 465 ASP A 48 REMARK 465 PHE A 133 REMARK 465 GLY A 134 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 HIS B 4 REMARK 465 ALA B 40 REMARK 465 ALA B 41 REMARK 465 SER B 42 REMARK 465 ALA B 43 REMARK 465 SER B 44 REMARK 465 THR B 45 REMARK 465 PRO B 46 REMARK 465 ARG B 47 REMARK 465 ASP B 48 REMARK 465 VAL B 49 REMARK 465 ARG B 50 REMARK 465 LEU B 51 REMARK 465 PHE B 52 REMARK 465 SER B 53 REMARK 465 THR B 54 REMARK 465 ARG B 55 REMARK 465 GLN B 56 REMARK 465 GLN B 57 REMARK 465 VAL B 58 REMARK 465 GLN B 59 REMARK 465 ARG B 60 REMARK 465 GLU B 61 REMARK 465 LEU B 62 REMARK 465 THR B 132 REMARK 465 PHE B 133 REMARK 465 GLY B 134 REMARK 465 MET C 1 REMARK 465 GLN C 2 REMARK 465 ASN C 3 REMARK 465 GLN C 4 REMARK 465 SER C 54 REMARK 465 PRO C 55 REMARK 465 HIS C 56 REMARK 465 VAL C 57 REMARK 465 ASN C 58 REMARK 465 LYS C 59 REMARK 465 ASP C 60 REMARK 465 ALA C 61 REMARK 465 ARG C 62 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 35 CB CYS A 35 SG -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 100 -20.06 84.85 REMARK 500 GLU C 78 46.53 70.45 REMARK 500 REMARK 500 REMARK: NULL DBREF 3W1Y A 1 134 UNP Q57WE7 Q57WE7_TRYB2 1 134 DBREF 3W1Y B 1 134 UNP Q57WE7 Q57WE7_TRYB2 1 134 DBREF 3W1Y C 1 103 UNP P0A7R5 RS10_ECOLI 1 103 SEQADV 3W1Y GLY A -2 UNP Q57WE7 EXPRESSION TAG SEQADV 3W1Y SER A -1 UNP Q57WE7 EXPRESSION TAG SEQADV 3W1Y HIS A 0 UNP Q57WE7 EXPRESSION TAG SEQADV 3W1Y GLY B -2 UNP Q57WE7 EXPRESSION TAG SEQADV 3W1Y SER B -1 UNP Q57WE7 EXPRESSION TAG SEQADV 3W1Y HIS B 0 UNP Q57WE7 EXPRESSION TAG SEQRES 1 A 137 GLY SER HIS MET PRO SER HIS TYR ARG TYR GLN TYR THR SEQRES 2 A 137 ARG SER PHE ALA GLU ARG ALA LYS GLU THR GLU SER ALA SEQRES 3 A 137 ARG LEU ARG TYR PRO LYS HIS ILE PRO ILE LEU CYS GLU SEQRES 4 A 137 PRO THR SER ALA ALA SER ALA SER THR PRO ARG ASP VAL SEQRES 5 A 137 ARG LEU PHE SER THR ARG GLN GLN VAL GLN ARG GLU LEU SEQRES 6 A 137 ASP CYS ASN LYS PHE LEU LEU PRO GLU THR ALA THR VAL SEQRES 7 A 137 MET GLU PHE MET MET ALA LEU ARG GLN ARG LEU LEU LEU SEQRES 8 A 137 GLU GLU GLY GLN ALA VAL PHE VAL PHE ILE GLY ASN GLU SEQRES 9 A 137 LEU PRO PRO ASN SER ALA CYS LEU GLY ASP ILE TYR ALA SEQRES 10 A 137 ARG ALA LYS ASP PRO ASP GLY PHE LEU TYR VAL SER TYR SEQRES 11 A 137 GLY VAL GLU ASN THR PHE GLY SEQRES 1 B 137 GLY SER HIS MET PRO SER HIS TYR ARG TYR GLN TYR THR SEQRES 2 B 137 ARG SER PHE ALA GLU ARG ALA LYS GLU THR GLU SER ALA SEQRES 3 B 137 ARG LEU ARG TYR PRO LYS HIS ILE PRO ILE LEU CYS GLU SEQRES 4 B 137 PRO THR SER ALA ALA SER ALA SER THR PRO ARG ASP VAL SEQRES 5 B 137 ARG LEU PHE SER THR ARG GLN GLN VAL GLN ARG GLU LEU SEQRES 6 B 137 ASP CYS ASN LYS PHE LEU LEU PRO GLU THR ALA THR VAL SEQRES 7 B 137 MET GLU PHE MET MET ALA LEU ARG GLN ARG LEU LEU LEU SEQRES 8 B 137 GLU GLU GLY GLN ALA VAL PHE VAL PHE ILE GLY ASN GLU SEQRES 9 B 137 LEU PRO PRO ASN SER ALA CYS LEU GLY ASP ILE TYR ALA SEQRES 10 B 137 ARG ALA LYS ASP PRO ASP GLY PHE LEU TYR VAL SER TYR SEQRES 11 B 137 GLY VAL GLU ASN THR PHE GLY SEQRES 1 C 103 MET GLN ASN GLN ARG ILE ARG ILE ARG LEU LYS ALA PHE SEQRES 2 C 103 ASP HIS ARG LEU ILE ASP GLN ALA THR ALA GLU ILE VAL SEQRES 3 C 103 GLU THR ALA LYS ARG THR GLY ALA GLN VAL ARG GLY PRO SEQRES 4 C 103 ILE PRO LEU PRO THR ARG LYS GLU ARG PHE THR VAL LEU SEQRES 5 C 103 ILE SER PRO HIS VAL ASN LYS ASP ALA ARG ASP GLN TYR SEQRES 6 C 103 GLU ILE ARG THR HIS LEU ARG LEU VAL ASP ILE VAL GLU SEQRES 7 C 103 PRO THR GLU LYS THR VAL ASP ALA LEU MET ARG LEU ASP SEQRES 8 C 103 LEU ALA ALA GLY VAL ASP VAL GLN ILE SER LEU GLY FORMUL 4 HOH *81(H2 O) HELIX 1 1 TYR A 5 ARG A 11 1 7 HELIX 2 2 SER A 12 TYR A 27 1 16 HELIX 3 3 ARG A 55 CYS A 64 1 10 HELIX 4 4 THR A 74 LEU A 86 1 13 HELIX 5 5 CYS A 108 LYS A 117 1 10 HELIX 6 6 ARG B 6 ARG B 11 1 6 HELIX 7 7 SER B 12 TYR B 27 1 16 HELIX 8 8 THR B 74 LEU B 86 1 13 HELIX 9 9 CYS B 108 LYS B 117 1 10 HELIX 10 10 ASP C 14 THR C 32 1 19 HELIX 11 11 THR C 80 ARG C 89 1 10 SHEET 1 A 4 ASN A 65 PRO A 70 0 SHEET 2 A 4 HIS A 30 PRO A 37 -1 N ILE A 31 O LEU A 69 SHEET 3 A 4 LEU A 123 GLU A 130 1 O LEU A 123 N PRO A 32 SHEET 4 A 4 ALA A 93 PHE A 97 -1 N ALA A 93 O GLU A 130 SHEET 1 B 4 ASN B 65 PRO B 70 0 SHEET 2 B 4 HIS B 30 PRO B 37 -1 N CYS B 35 O ASN B 65 SHEET 3 B 4 LEU B 123 GLU B 130 1 O VAL B 125 N LEU B 34 SHEET 4 B 4 ALA B 93 PHE B 97 -1 N ALA B 93 O GLU B 130 SHEET 1 C 4 GLN C 35 THR C 50 0 SHEET 2 C 4 GLN C 64 VAL C 77 -1 O THR C 69 N ARG C 45 SHEET 3 C 4 ILE C 6 ALA C 12 -1 N ILE C 6 O ILE C 76 SHEET 4 C 4 ASP C 97 LEU C 102 -1 O ASP C 97 N LYS C 11 CISPEP 1 GLY C 38 PRO C 39 0 2.13 CRYST1 48.012 61.197 67.636 90.00 110.77 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020828 0.000000 0.007898 0.00000 SCALE2 0.000000 0.016341 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015812 0.00000