PDB Short entry for 3WI5 HEADER MEMBRANE PROTEIN 05-SEP-13 3WI5 TITLE CRYSTAL STRUCTURE OF THE LOOP 7 MUTANT PORB FROM NEISSERIA TITLE 2 MENINGITIDIS SEROGROUP B COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR OUTER MEMBRANE PROTEIN P.IB; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PIB, PROTEIN IB, CLASS 3 PROTEIN, PORIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 487; SOURCE 4 STRAIN: MC58; SOURCE 5 GENE: PORB, NMB2039; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-BARREL, PORIN, OUTER MEMBRANE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.KATTNER,D.TOUSSI,L.M.WETZLER,N.RUPPEL,P.MASSARI,M.TANABE REVDAT 3 08-NOV-23 3WI5 1 REMARK SEQADV REVDAT 2 12-MAR-14 3WI5 1 JRNL REVDAT 1 01-JAN-14 3WI5 0 JRNL AUTH C.KATTNER,D.N.TOUSSI,J.ZAUCHA,L.M.WETZLER,N.RUPPEL, JRNL AUTH 2 U.ZACHARIAE,P.MASSARI,M.TANABE JRNL TITL CRYSTALLOGRAPHIC ANALYSIS OF NEISSERIA MENINGITIDIS PORB JRNL TITL 2 EXTRACELLULAR LOOPS POTENTIALLY IMPLICATED IN TLR2 JRNL TITL 3 RECOGNITION. JRNL REF J.STRUCT.BIOL. V. 185 440 2014 JRNL REFN ISSN 1047-8477 JRNL PMID 24361688 JRNL DOI 10.1016/J.JSB.2013.12.006 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 23673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1791 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1376 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.4170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2393 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 82 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.15000 REMARK 3 B22 (A**2) : -1.15000 REMARK 3 B33 (A**2) : 1.72000 REMARK 3 B12 (A**2) : -0.57000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.246 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.211 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2465 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3330 ; 1.638 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 311 ; 7.052 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;36.250 ;24.298 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 392 ;15.615 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;19.203 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 349 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1927 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3WI5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000096364. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : TOROIDAL MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25466 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.550 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MLPHARE, PHASES REMARK 200 STARTING MODEL: 3VZT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 65MM HEPES PH 7.5, 1.1M TRI-SODIUM REMARK 280 CITRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 71.74300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.42084 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 59.47333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 71.74300 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 41.42084 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 59.47333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 71.74300 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 41.42084 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 59.47333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 71.74300 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 41.42084 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 59.47333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 71.74300 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 41.42084 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 59.47333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 71.74300 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 41.42084 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 59.47333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 82.84168 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 118.94667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 82.84168 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 118.94667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 82.84168 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 118.94667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 82.84168 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 118.94667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 82.84168 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 118.94667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 82.84168 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 118.94667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 71.74300 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 124.26252 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -71.74300 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 124.26252 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 260 CG2 ILE A 263 2.02 REMARK 500 NH2 ARG A 240 OD2 ASP A 277 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 129 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 ALA A 206 CB - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 LEU A 207 N - CA - CB ANGL. DEV. = 19.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 25 -147.59 57.96 REMARK 500 ALA A 64 55.17 -144.23 REMARK 500 ARG A 76 -166.42 -107.84 REMARK 500 ASP A 103 67.05 -102.60 REMARK 500 ASN A 204 -161.49 -164.35 REMARK 500 ALA A 206 11.46 51.75 REMARK 500 LEU A 207 114.04 -163.56 REMARK 500 ASP A 222 -164.22 -118.15 REMARK 500 GLU A 297 -80.65 -99.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WI4 RELATED DB: PDB DBREF 3WI5 A 2 313 UNP P30690 OMPB1_NEIMB 20 331 SEQADV 3WI5 ALA A 259 UNP P30690 ASP 277 ENGINEERED MUTATION SEQADV 3WI5 LYS A 260 UNP P30690 ASP 278 ENGINEERED MUTATION SEQADV 3WI5 ARG A 266 UNP P30690 GLU 284 ENGINEERED MUTATION SEQRES 1 A 312 ASP VAL THR LEU TYR GLY THR ILE LYS ALA GLY VAL GLU SEQRES 2 A 312 THR SER ARG SER VAL PHE HIS GLN ASN GLY GLN VAL THR SEQRES 3 A 312 GLU VAL THR THR ALA THR GLY ILE VAL ASP LEU GLY SER SEQRES 4 A 312 LYS ILE GLY PHE LYS GLY GLN GLU ASP LEU GLY ASN GLY SEQRES 5 A 312 LEU LYS ALA ILE TRP GLN VAL GLU GLN LYS ALA SER ILE SEQRES 6 A 312 ALA GLY THR ASP SER GLY TRP GLY ASN ARG GLN SER PHE SEQRES 7 A 312 ILE GLY LEU LYS GLY GLY PHE GLY LYS LEU ARG VAL GLY SEQRES 8 A 312 ARG LEU ASN SER VAL LEU LYS ASP THR GLY ASP ILE ASN SEQRES 9 A 312 PRO TRP ASP SER LYS SER ASP TYR LEU GLY VAL ASN LYS SEQRES 10 A 312 ILE ALA GLU PRO GLU ALA ARG LEU ILE SER VAL ARG TYR SEQRES 11 A 312 ASP SER PRO GLU PHE ALA GLY LEU SER GLY SER VAL GLN SEQRES 12 A 312 TYR ALA LEU ASN ASP ASN ALA GLY ARG HIS ASN SER GLU SEQRES 13 A 312 SER TYR HIS ALA GLY PHE ASN TYR LYS ASN GLY GLY PHE SEQRES 14 A 312 PHE VAL GLN TYR GLY GLY ALA TYR LYS ARG HIS HIS GLN SEQRES 15 A 312 VAL GLN GLU GLY LEU ASN ILE GLU LYS TYR GLN ILE HIS SEQRES 16 A 312 ARG LEU VAL SER GLY TYR ASP ASN ASP ALA LEU TYR ALA SEQRES 17 A 312 SER VAL ALA VAL GLN GLN GLN ASP ALA LYS LEU THR ASP SEQRES 18 A 312 ALA SER ASN SER HIS ASN SER GLN THR GLU VAL ALA ALA SEQRES 19 A 312 THR LEU ALA TYR ARG PHE GLY ASN VAL THR PRO ARG VAL SEQRES 20 A 312 SER TYR ALA HIS GLY PHE LYS GLY LEU VAL ALA LYS ALA SEQRES 21 A 312 ASP ILE GLY ASN ARG TYR ASP GLN VAL VAL VAL GLY ALA SEQRES 22 A 312 GLU TYR ASP PHE SER LYS ARG THR SER ALA LEU VAL SER SEQRES 23 A 312 ALA GLY TRP LEU GLN GLU GLY LYS GLY GLU ASN LYS PHE SEQRES 24 A 312 VAL ALA THR ALA GLY GLY VAL GLY LEU ARG HIS LYS PHE HET FLC A 401 13 HET FLC A 402 13 HETNAM FLC CITRATE ANION FORMUL 2 FLC 2(C6 H5 O7 3-) FORMUL 4 HOH *82(H2 O) HELIX 1 1 VAL A 97 THR A 101 5 5 HELIX 2 2 LEU A 147 GLY A 152 1 6 SHEET 1 A18 VAL A 26 ASP A 37 0 SHEET 2 A18 VAL A 3 HIS A 21 -1 N SER A 18 O THR A 30 SHEET 3 A18 PHE A 300 PHE A 313 -1 O HIS A 311 N ILE A 9 SHEET 4 A18 THR A 282 GLN A 292 -1 N LEU A 291 O ALA A 302 SHEET 5 A18 TYR A 267 ASP A 277 -1 N VAL A 272 O ALA A 288 SHEET 6 A18 VAL A 244 GLY A 253 -1 N SER A 249 O VAL A 271 SHEET 7 A18 HIS A 227 ALA A 238 -1 N ALA A 235 O TYR A 250 SHEET 8 A18 LEU A 207 LEU A 220 -1 N TYR A 208 O ALA A 238 SHEET 9 A18 ILE A 190 ASN A 204 -1 N HIS A 196 O GLN A 215 SHEET 10 A18 PHE A 170 HIS A 182 -1 N GLN A 173 O VAL A 199 SHEET 11 A18 SER A 158 ASN A 167 -1 N ALA A 161 O GLY A 176 SHEET 12 A18 LEU A 139 ALA A 146 -1 N SER A 140 O ASN A 164 SHEET 13 A18 ARG A 125 ASP A 132 -1 N TYR A 131 O VAL A 143 SHEET 14 A18 GLY A 87 ASN A 95 -1 N LYS A 88 O ASP A 132 SHEET 15 A18 SER A 78 GLY A 84 -1 N LEU A 82 O LEU A 89 SHEET 16 A18 LEU A 54 LYS A 63 -1 N LYS A 55 O LYS A 83 SHEET 17 A18 LYS A 41 GLY A 51 -1 N PHE A 44 O VAL A 60 SHEET 18 A18 VAL A 3 HIS A 21 -1 N THR A 4 O LYS A 45 CISPEP 1 ASP A 262 ILE A 263 0 0.85 CISPEP 2 ILE A 263 GLY A 264 0 23.74 SITE 1 AC1 5 LYS A 63 ARG A 76 LYS A 99 ARG A 125 SITE 2 AC1 5 HOH A 526 SITE 1 AC2 2 LYS A 41 ARG A 76 CRYST1 143.486 143.486 178.420 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006969 0.004024 0.000000 0.00000 SCALE2 0.000000 0.008047 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005605 0.00000