PDB Short entry for 3WVF HEADER CHAPERONE 20-MAY-14 3WVF TITLE CRYSTAL STRUCTURE OF YIDC FROM ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE PROTEIN INSERTASE YIDC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-540; COMPND 5 SYNONYM: FOLDASE YIDC, MEMBRANE INTEGRASE YIDC, MEMBRANE PROTEIN COMPND 6 YIDC; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 364106; SOURCE 4 STRAIN: UTI89; SOURCE 5 GENE: YIDC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET VARIANT KEYWDS ALPHA HELICAL, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR K.KUMAZAKI,T.TSUKAZAKI,T.KISHIMOTO,R.ISHITANI,O.NUREKI REVDAT 2 08-NOV-23 3WVF 1 SEQADV REVDAT 1 17-DEC-14 3WVF 0 JRNL AUTH K.KUMAZAKI,T.KISHIMOTO,A.FURUKAWA,H.MORI,Y.TANAKA,N.DOHMAE, JRNL AUTH 2 R.ISHITANI,T.TSUKAZAKI,O.NUREKI JRNL TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI YIDC, A MEMBRANE JRNL TITL 2 PROTEIN CHAPERONE AND INSERTASE JRNL REF SCI REP V. 4 7299 2014 JRNL REFN ESSN 2045-2322 JRNL PMID 25466392 JRNL DOI 10.1038/SREP07299 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.140 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 16470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.8825 - 7.3038 0.98 1315 146 0.1725 0.2082 REMARK 3 2 7.3038 - 5.8067 0.96 1304 145 0.2188 0.2469 REMARK 3 3 5.8067 - 5.0755 0.97 1300 145 0.1979 0.2710 REMARK 3 4 5.0755 - 4.6127 0.95 1286 144 0.1867 0.2416 REMARK 3 5 4.6127 - 4.2828 0.67 887 100 0.1948 0.2589 REMARK 3 6 4.2828 - 4.0307 0.95 1315 145 0.2021 0.2384 REMARK 3 7 4.0307 - 3.8291 0.94 1243 135 0.2149 0.2640 REMARK 3 8 3.8291 - 3.6626 0.94 1280 142 0.2278 0.3094 REMARK 3 9 3.6626 - 3.5218 0.93 1232 137 0.2436 0.3109 REMARK 3 10 3.5218 - 3.4004 0.91 1239 140 0.2645 0.3416 REMARK 3 11 3.4004 - 3.2941 0.90 1198 136 0.2939 0.3472 REMARK 3 12 3.2941 - 3.2001 0.89 1219 137 0.3259 0.3806 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.540 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7125 REMARK 3 ANGLE : 0.770 9718 REMARK 3 CHIRALITY : 0.028 1083 REMARK 3 PLANARITY : 0.005 1243 REMARK 3 DIHEDRAL : 13.884 2528 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WVF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000096841. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16696 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX (PHASER-MR) REMARK 200 STARTING MODEL: 3BS6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% POLY(ETHYLENEGLYCOL) 600, 100MM REMARK 280 MES-NAOH, 50MM POTASSIUM THIOCYANATE, 12MM TRIGLYCINE, PH 5.9, REMARK 280 LIPID CUBIC PHASE (LCP), TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 GLN A 4 REMARK 465 ARG A 5 REMARK 465 ASN A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 VAL A 9 REMARK 465 ILE A 10 REMARK 465 ALA A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 PHE A 14 REMARK 465 VAL A 15 REMARK 465 SER A 16 REMARK 465 PHE A 17 REMARK 465 MET A 18 REMARK 465 ILE A 19 REMARK 465 TRP A 20 REMARK 465 GLN A 21 REMARK 465 ALA A 22 REMARK 465 TRP A 23 REMARK 465 GLU A 24 REMARK 465 GLN A 25 REMARK 465 ASP A 26 REMARK 465 LYS A 27 REMARK 465 ASN A 28 REMARK 465 PRO A 29 REMARK 465 GLN A 30 REMARK 465 PRO A 31 REMARK 465 GLN A 32 REMARK 465 ALA A 33 REMARK 465 GLN A 34 REMARK 465 GLN A 35 REMARK 465 THR A 36 REMARK 465 THR A 37 REMARK 465 GLN A 38 REMARK 465 THR A 39 REMARK 465 THR A 40 REMARK 465 THR A 41 REMARK 465 THR A 42 REMARK 465 ALA A 43 REMARK 465 ALA A 44 REMARK 465 GLY A 45 REMARK 465 SER A 46 REMARK 465 ALA A 47 REMARK 465 ALA A 48 REMARK 465 ASP A 49 REMARK 465 GLN A 50 REMARK 465 GLY A 51 REMARK 465 VAL A 52 REMARK 465 PRO A 53 REMARK 465 ALA A 54 REMARK 465 SER A 55 REMARK 465 PRO A 204 REMARK 465 HIS A 205 REMARK 465 LEU A 206 REMARK 465 ASP A 207 REMARK 465 THR A 208 REMARK 465 GLY A 209 REMARK 465 SER A 210 REMARK 465 SER A 211 REMARK 465 ASN A 212 REMARK 465 PHE A 213 REMARK 465 ALA A 214 REMARK 465 LEU A 215 REMARK 465 LYS A 480 REMARK 465 MET A 481 REMARK 465 SER A 482 REMARK 465 PRO A 483 REMARK 465 THR A 484 REMARK 465 THR A 485 REMARK 465 VAL A 486 REMARK 465 THR A 487 REMARK 465 ASP A 488 REMARK 465 PRO A 489 REMARK 465 MET A 490 REMARK 465 GLN A 491 REMARK 465 GLN A 492 REMARK 465 GLN A 529 REMARK 465 LEU A 530 REMARK 465 ILE A 531 REMARK 465 TYR A 532 REMARK 465 ARG A 533 REMARK 465 GLY A 534 REMARK 465 LEU A 535 REMARK 465 GLU A 536 REMARK 465 LYS A 537 REMARK 465 ARG A 538 REMARK 465 GLY A 539 REMARK 465 LEU A 540 REMARK 465 LEU A 541 REMARK 465 GLU A 542 REMARK 465 SER A 543 REMARK 465 SER A 544 REMARK 465 GLY A 545 REMARK 465 GLU A 546 REMARK 465 ASN A 547 REMARK 465 LEU A 548 REMARK 465 TYR A 549 REMARK 465 PHE A 550 REMARK 465 GLN A 551 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 GLN B 4 REMARK 465 ARG B 5 REMARK 465 ASN B 6 REMARK 465 LEU B 7 REMARK 465 LEU B 8 REMARK 465 VAL B 9 REMARK 465 ILE B 10 REMARK 465 ALA B 11 REMARK 465 LEU B 12 REMARK 465 LEU B 13 REMARK 465 PHE B 14 REMARK 465 VAL B 15 REMARK 465 SER B 16 REMARK 465 PHE B 17 REMARK 465 MET B 18 REMARK 465 ILE B 19 REMARK 465 TRP B 20 REMARK 465 GLN B 21 REMARK 465 ALA B 22 REMARK 465 TRP B 23 REMARK 465 GLU B 24 REMARK 465 GLN B 25 REMARK 465 ASP B 26 REMARK 465 LYS B 27 REMARK 465 ASN B 28 REMARK 465 PRO B 29 REMARK 465 GLN B 30 REMARK 465 PRO B 31 REMARK 465 GLN B 32 REMARK 465 ALA B 33 REMARK 465 GLN B 34 REMARK 465 GLN B 35 REMARK 465 THR B 36 REMARK 465 THR B 37 REMARK 465 GLN B 38 REMARK 465 THR B 39 REMARK 465 THR B 40 REMARK 465 THR B 41 REMARK 465 THR B 42 REMARK 465 ALA B 43 REMARK 465 ALA B 44 REMARK 465 GLY B 45 REMARK 465 SER B 46 REMARK 465 ALA B 47 REMARK 465 ALA B 48 REMARK 465 ASP B 49 REMARK 465 GLN B 50 REMARK 465 GLY B 51 REMARK 465 VAL B 52 REMARK 465 PRO B 53 REMARK 465 ALA B 54 REMARK 465 SER B 55 REMARK 465 PRO B 204 REMARK 465 HIS B 205 REMARK 465 LEU B 206 REMARK 465 ASP B 207 REMARK 465 THR B 208 REMARK 465 GLY B 209 REMARK 465 SER B 210 REMARK 465 SER B 211 REMARK 465 ASN B 212 REMARK 465 PHE B 213 REMARK 465 ALA B 214 REMARK 465 MET B 481 REMARK 465 SER B 482 REMARK 465 PRO B 483 REMARK 465 THR B 484 REMARK 465 THR B 485 REMARK 465 VAL B 486 REMARK 465 THR B 487 REMARK 465 ASP B 488 REMARK 465 PRO B 489 REMARK 465 MET B 490 REMARK 465 GLN B 491 REMARK 465 GLN B 492 REMARK 465 LYS B 493 REMARK 465 ILE B 494 REMARK 465 MET B 495 REMARK 465 THR B 496 REMARK 465 PHE B 497 REMARK 465 GLN B 529 REMARK 465 LEU B 530 REMARK 465 ILE B 531 REMARK 465 TYR B 532 REMARK 465 ARG B 533 REMARK 465 GLY B 534 REMARK 465 LEU B 535 REMARK 465 GLU B 536 REMARK 465 LYS B 537 REMARK 465 ARG B 538 REMARK 465 GLY B 539 REMARK 465 LEU B 540 REMARK 465 LEU B 541 REMARK 465 GLU B 542 REMARK 465 SER B 543 REMARK 465 SER B 544 REMARK 465 GLY B 545 REMARK 465 GLU B 546 REMARK 465 ASN B 547 REMARK 465 LEU B 548 REMARK 465 TYR B 549 REMARK 465 PHE B 550 REMARK 465 GLN B 551 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 216 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 394 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 GLN A 402 CG CD OE1 NE2 REMARK 470 MET A 408 CG SD CE REMARK 470 LYS A 416 CG CD CE NZ REMARK 470 LEU A 420 CG CD1 CD2 REMARK 470 LEU A 426 CG CD1 CD2 REMARK 470 LYS A 493 CG CD CE NZ REMARK 470 ILE A 494 CG1 CG2 CD1 REMARK 470 MET A 495 CG SD CE REMARK 470 THR A 496 OG1 CG2 REMARK 470 GLN A 528 CG CD OE1 NE2 REMARK 470 GLN B 57 CG CD OE1 NE2 REMARK 470 GLU B 142 CG CD OE1 OE2 REMARK 470 GLU B 185 CG CD OE1 OE2 REMARK 470 LEU B 215 CG CD1 CD2 REMARK 470 GLN B 376 CG CD OE1 NE2 REMARK 470 TYR B 377 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 384 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 389 CG CD CE NZ REMARK 470 ARG B 394 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 396 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 399 CG OD1 OD2 REMARK 470 LYS B 401 CG CD CE NZ REMARK 470 ILE B 404 CG1 CG2 CD1 REMARK 470 GLN B 406 CG CD OE1 NE2 REMARK 470 GLU B 407 CG CD OE1 OE2 REMARK 470 LYS B 416 CG CD CE NZ REMARK 470 LEU B 420 CG CD1 CD2 REMARK 470 CYS B 423 SG REMARK 470 PHE B 424 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 426 CG CD1 CD2 REMARK 470 GLN B 429 CG CD OE1 NE2 REMARK 470 GLN B 461 CG CD OE1 NE2 REMARK 470 LYS B 480 CG CD CE NZ REMARK 470 MET B 498 CG SD CE REMARK 470 LEU B 507 CG CD1 CD2 REMARK 470 GLN B 528 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 65 -163.40 -122.81 REMARK 500 TYR A 108 100.13 -163.76 REMARK 500 THR A 115 -157.36 -102.63 REMARK 500 ASN A 245 73.29 -155.98 REMARK 500 TYR A 259 -15.58 71.71 REMARK 500 ASP A 399 66.76 -104.51 REMARK 500 LEU A 453 -130.58 59.99 REMARK 500 TYR A 465 19.37 58.81 REMARK 500 THR B 65 -161.14 -123.37 REMARK 500 TYR B 108 96.62 -162.48 REMARK 500 THR B 115 -157.51 -105.35 REMARK 500 ASN B 245 73.82 -162.34 REMARK 500 TYR B 259 -12.92 71.74 REMARK 500 MET B 369 39.03 -95.50 REMARK 500 LEU B 453 -132.48 58.37 REMARK 500 REMARK 500 REMARK: NULL DBREF 3WVF A 1 540 UNP Q1R4M9 YIDC_ECOUT 1 540 DBREF 3WVF B 1 540 UNP Q1R4M9 YIDC_ECOUT 1 540 SEQADV 3WVF LEU A 541 UNP Q1R4M9 EXPRESSION TAG SEQADV 3WVF GLU A 542 UNP Q1R4M9 EXPRESSION TAG SEQADV 3WVF SER A 543 UNP Q1R4M9 EXPRESSION TAG SEQADV 3WVF SER A 544 UNP Q1R4M9 EXPRESSION TAG SEQADV 3WVF GLY A 545 UNP Q1R4M9 EXPRESSION TAG SEQADV 3WVF GLU A 546 UNP Q1R4M9 EXPRESSION TAG SEQADV 3WVF ASN A 547 UNP Q1R4M9 EXPRESSION TAG SEQADV 3WVF LEU A 548 UNP Q1R4M9 EXPRESSION TAG SEQADV 3WVF TYR A 549 UNP Q1R4M9 EXPRESSION TAG SEQADV 3WVF PHE A 550 UNP Q1R4M9 EXPRESSION TAG SEQADV 3WVF GLN A 551 UNP Q1R4M9 EXPRESSION TAG SEQADV 3WVF LEU B 541 UNP Q1R4M9 EXPRESSION TAG SEQADV 3WVF GLU B 542 UNP Q1R4M9 EXPRESSION TAG SEQADV 3WVF SER B 543 UNP Q1R4M9 EXPRESSION TAG SEQADV 3WVF SER B 544 UNP Q1R4M9 EXPRESSION TAG SEQADV 3WVF GLY B 545 UNP Q1R4M9 EXPRESSION TAG SEQADV 3WVF GLU B 546 UNP Q1R4M9 EXPRESSION TAG SEQADV 3WVF ASN B 547 UNP Q1R4M9 EXPRESSION TAG SEQADV 3WVF LEU B 548 UNP Q1R4M9 EXPRESSION TAG SEQADV 3WVF TYR B 549 UNP Q1R4M9 EXPRESSION TAG SEQADV 3WVF PHE B 550 UNP Q1R4M9 EXPRESSION TAG SEQADV 3WVF GLN B 551 UNP Q1R4M9 EXPRESSION TAG SEQRES 1 A 551 MET ASP SER GLN ARG ASN LEU LEU VAL ILE ALA LEU LEU SEQRES 2 A 551 PHE VAL SER PHE MET ILE TRP GLN ALA TRP GLU GLN ASP SEQRES 3 A 551 LYS ASN PRO GLN PRO GLN ALA GLN GLN THR THR GLN THR SEQRES 4 A 551 THR THR THR ALA ALA GLY SER ALA ALA ASP GLN GLY VAL SEQRES 5 A 551 PRO ALA SER GLY GLN GLY LYS LEU ILE SER VAL LYS THR SEQRES 6 A 551 ASP VAL LEU ASP LEU THR ILE ASN THR ARG GLY GLY ASP SEQRES 7 A 551 VAL GLU GLN ALA LEU LEU PRO ALA TYR PRO LYS GLU LEU SEQRES 8 A 551 ASN SER THR GLN PRO PHE GLN LEU LEU GLU THR SER PRO SEQRES 9 A 551 GLN PHE ILE TYR GLN ALA GLN SER GLY LEU THR GLY ARG SEQRES 10 A 551 ASP GLY PRO ASP ASN PRO ALA ASN GLY PRO ARG PRO LEU SEQRES 11 A 551 TYR ASN VAL GLU LYS ASP ALA TYR VAL LEU ALA GLU GLY SEQRES 12 A 551 GLN ASN GLU LEU GLN VAL PRO MET THR TYR THR ASP ALA SEQRES 13 A 551 ALA GLY ASN THR PHE THR LYS THR PHE VAL LEU LYS ARG SEQRES 14 A 551 GLY ASP TYR ALA VAL ASN VAL ASN TYR ASN VAL GLN ASN SEQRES 15 A 551 ALA GLY GLU LYS PRO LEU GLU ILE SER THR PHE GLY GLN SEQRES 16 A 551 LEU LYS GLN SER ILE THR LEU PRO PRO HIS LEU ASP THR SEQRES 17 A 551 GLY SER SER ASN PHE ALA LEU HIS THR PHE ARG GLY ALA SEQRES 18 A 551 ALA TYR SER THR PRO ASP GLU LYS TYR GLU LYS TYR LYS SEQRES 19 A 551 PHE ASP THR ILE ALA ASP ASN GLU ASN LEU ASN ILE SER SEQRES 20 A 551 SER LYS GLY GLY TRP VAL ALA MET LEU GLN GLN TYR PHE SEQRES 21 A 551 ALA THR ALA TRP ILE PRO HIS ASN ASP GLY THR ASN ASN SEQRES 22 A 551 PHE TYR THR ALA ASN LEU GLY ASN GLY ILE ALA ALA ILE SEQRES 23 A 551 GLY TYR LYS SER GLN PRO VAL LEU VAL GLN PRO GLY GLN SEQRES 24 A 551 THR GLY ALA MET ASN SER THR LEU TRP VAL GLY PRO GLU SEQRES 25 A 551 ILE GLN ASP LYS MET ALA ALA VAL ALA PRO HIS LEU ASP SEQRES 26 A 551 LEU THR VAL ASP TYR GLY TRP LEU TRP PHE ILE SER GLN SEQRES 27 A 551 PRO LEU PHE LYS LEU LEU LYS TRP ILE HIS SER PHE VAL SEQRES 28 A 551 GLY ASN TRP GLY PHE SER ILE ILE ILE ILE THR PHE ILE SEQRES 29 A 551 VAL ARG GLY ILE MET TYR PRO LEU THR LYS ALA GLN TYR SEQRES 30 A 551 THR SER MET ALA LYS MET ARG MET LEU GLN PRO LYS ILE SEQRES 31 A 551 GLN ALA MET ARG GLU ARG LEU GLY ASP ASP LYS GLN ARG SEQRES 32 A 551 ILE SER GLN GLU MET MET ALA LEU TYR LYS ALA GLU LYS SEQRES 33 A 551 VAL ASN PRO LEU GLY GLY CYS PHE PRO LEU LEU ILE GLN SEQRES 34 A 551 MET PRO ILE PHE LEU ALA LEU TYR TYR MET LEU MET GLY SEQRES 35 A 551 SER VAL GLU LEU ARG GLN ALA PRO PHE ALA LEU TRP ILE SEQRES 36 A 551 HIS ASP LEU SER ALA GLN ASP PRO TYR TYR ILE LEU PRO SEQRES 37 A 551 ILE LEU MET GLY VAL THR MET PHE PHE ILE GLN LYS MET SEQRES 38 A 551 SER PRO THR THR VAL THR ASP PRO MET GLN GLN LYS ILE SEQRES 39 A 551 MET THR PHE MET PRO VAL ILE PHE THR VAL PHE PHE LEU SEQRES 40 A 551 TRP PHE PRO SER GLY LEU VAL LEU TYR TYR ILE VAL SER SEQRES 41 A 551 ASN LEU VAL THR ILE ILE GLN GLN GLN LEU ILE TYR ARG SEQRES 42 A 551 GLY LEU GLU LYS ARG GLY LEU LEU GLU SER SER GLY GLU SEQRES 43 A 551 ASN LEU TYR PHE GLN SEQRES 1 B 551 MET ASP SER GLN ARG ASN LEU LEU VAL ILE ALA LEU LEU SEQRES 2 B 551 PHE VAL SER PHE MET ILE TRP GLN ALA TRP GLU GLN ASP SEQRES 3 B 551 LYS ASN PRO GLN PRO GLN ALA GLN GLN THR THR GLN THR SEQRES 4 B 551 THR THR THR ALA ALA GLY SER ALA ALA ASP GLN GLY VAL SEQRES 5 B 551 PRO ALA SER GLY GLN GLY LYS LEU ILE SER VAL LYS THR SEQRES 6 B 551 ASP VAL LEU ASP LEU THR ILE ASN THR ARG GLY GLY ASP SEQRES 7 B 551 VAL GLU GLN ALA LEU LEU PRO ALA TYR PRO LYS GLU LEU SEQRES 8 B 551 ASN SER THR GLN PRO PHE GLN LEU LEU GLU THR SER PRO SEQRES 9 B 551 GLN PHE ILE TYR GLN ALA GLN SER GLY LEU THR GLY ARG SEQRES 10 B 551 ASP GLY PRO ASP ASN PRO ALA ASN GLY PRO ARG PRO LEU SEQRES 11 B 551 TYR ASN VAL GLU LYS ASP ALA TYR VAL LEU ALA GLU GLY SEQRES 12 B 551 GLN ASN GLU LEU GLN VAL PRO MET THR TYR THR ASP ALA SEQRES 13 B 551 ALA GLY ASN THR PHE THR LYS THR PHE VAL LEU LYS ARG SEQRES 14 B 551 GLY ASP TYR ALA VAL ASN VAL ASN TYR ASN VAL GLN ASN SEQRES 15 B 551 ALA GLY GLU LYS PRO LEU GLU ILE SER THR PHE GLY GLN SEQRES 16 B 551 LEU LYS GLN SER ILE THR LEU PRO PRO HIS LEU ASP THR SEQRES 17 B 551 GLY SER SER ASN PHE ALA LEU HIS THR PHE ARG GLY ALA SEQRES 18 B 551 ALA TYR SER THR PRO ASP GLU LYS TYR GLU LYS TYR LYS SEQRES 19 B 551 PHE ASP THR ILE ALA ASP ASN GLU ASN LEU ASN ILE SER SEQRES 20 B 551 SER LYS GLY GLY TRP VAL ALA MET LEU GLN GLN TYR PHE SEQRES 21 B 551 ALA THR ALA TRP ILE PRO HIS ASN ASP GLY THR ASN ASN SEQRES 22 B 551 PHE TYR THR ALA ASN LEU GLY ASN GLY ILE ALA ALA ILE SEQRES 23 B 551 GLY TYR LYS SER GLN PRO VAL LEU VAL GLN PRO GLY GLN SEQRES 24 B 551 THR GLY ALA MET ASN SER THR LEU TRP VAL GLY PRO GLU SEQRES 25 B 551 ILE GLN ASP LYS MET ALA ALA VAL ALA PRO HIS LEU ASP SEQRES 26 B 551 LEU THR VAL ASP TYR GLY TRP LEU TRP PHE ILE SER GLN SEQRES 27 B 551 PRO LEU PHE LYS LEU LEU LYS TRP ILE HIS SER PHE VAL SEQRES 28 B 551 GLY ASN TRP GLY PHE SER ILE ILE ILE ILE THR PHE ILE SEQRES 29 B 551 VAL ARG GLY ILE MET TYR PRO LEU THR LYS ALA GLN TYR SEQRES 30 B 551 THR SER MET ALA LYS MET ARG MET LEU GLN PRO LYS ILE SEQRES 31 B 551 GLN ALA MET ARG GLU ARG LEU GLY ASP ASP LYS GLN ARG SEQRES 32 B 551 ILE SER GLN GLU MET MET ALA LEU TYR LYS ALA GLU LYS SEQRES 33 B 551 VAL ASN PRO LEU GLY GLY CYS PHE PRO LEU LEU ILE GLN SEQRES 34 B 551 MET PRO ILE PHE LEU ALA LEU TYR TYR MET LEU MET GLY SEQRES 35 B 551 SER VAL GLU LEU ARG GLN ALA PRO PHE ALA LEU TRP ILE SEQRES 36 B 551 HIS ASP LEU SER ALA GLN ASP PRO TYR TYR ILE LEU PRO SEQRES 37 B 551 ILE LEU MET GLY VAL THR MET PHE PHE ILE GLN LYS MET SEQRES 38 B 551 SER PRO THR THR VAL THR ASP PRO MET GLN GLN LYS ILE SEQRES 39 B 551 MET THR PHE MET PRO VAL ILE PHE THR VAL PHE PHE LEU SEQRES 40 B 551 TRP PHE PRO SER GLY LEU VAL LEU TYR TYR ILE VAL SER SEQRES 41 B 551 ASN LEU VAL THR ILE ILE GLN GLN GLN LEU ILE TYR ARG SEQRES 42 B 551 GLY LEU GLU LYS ARG GLY LEU LEU GLU SER SER GLY GLU SEQRES 43 B 551 ASN LEU TYR PHE GLN HELIX 1 1 ASN A 122 GLY A 126 5 5 HELIX 2 2 LYS A 234 ASP A 240 1 7 HELIX 3 3 ILE A 313 ALA A 321 1 9 HELIX 4 4 HIS A 323 VAL A 328 5 6 HELIX 5 5 LEU A 333 GLY A 352 1 20 HELIX 6 6 ASN A 353 MET A 369 1 17 HELIX 7 7 MET A 369 GLY A 398 1 30 HELIX 8 8 ASP A 400 LYS A 416 1 17 HELIX 9 9 CYS A 423 SER A 443 1 21 HELIX 10 10 TYR A 465 PHE A 477 1 13 HELIX 11 11 LYS A 493 THR A 496 5 4 HELIX 12 12 PHE A 497 PHE A 506 1 10 HELIX 13 13 PRO A 510 GLN A 528 1 19 HELIX 14 14 ASN B 122 GLY B 126 5 5 HELIX 15 15 LYS B 234 ASP B 240 1 7 HELIX 16 16 ILE B 313 ALA B 321 1 9 HELIX 17 17 HIS B 323 VAL B 328 5 6 HELIX 18 18 LEU B 333 GLY B 352 1 20 HELIX 19 19 ASN B 353 MET B 369 1 17 HELIX 20 20 TYR B 370 LEU B 397 1 28 HELIX 21 21 ASP B 400 LYS B 416 1 17 HELIX 22 22 CYS B 423 SER B 443 1 21 HELIX 23 23 ILE B 466 PHE B 476 1 11 HELIX 24 24 VAL B 500 LEU B 507 1 8 HELIX 25 25 PRO B 510 GLN B 527 1 18 SHEET 1 A 5 PRO A 96 LEU A 100 0 SHEET 2 A 5 ASP A 78 PRO A 88 -1 N LEU A 84 O PHE A 97 SHEET 3 A 5 ASP A 69 ASN A 73 -1 N ASP A 69 O LEU A 83 SHEET 4 A 5 LEU A 60 LYS A 64 -1 N ILE A 61 O ILE A 72 SHEET 5 A 5 ALA A 137 VAL A 139 1 O TYR A 138 N SER A 62 SHEET 1 B 5 TYR A 108 THR A 115 0 SHEET 2 B 5 LEU A 188 SER A 199 -1 O GLN A 195 N GLN A 111 SHEET 3 B 5 ILE A 283 LYS A 289 -1 O ILE A 286 N LEU A 196 SHEET 4 B 5 ASN A 272 ASN A 278 -1 N ALA A 277 O ALA A 285 SHEET 5 B 5 ASN A 245 SER A 248 -1 N SER A 248 O ASN A 272 SHEET 1 C 3 TYR A 108 THR A 115 0 SHEET 2 C 3 LEU A 188 SER A 199 -1 O GLN A 195 N GLN A 111 SHEET 3 C 3 VAL A 293 VAL A 295 -1 O VAL A 293 N ILE A 190 SHEET 1 D 8 GLU A 146 THR A 154 0 SHEET 2 D 8 THR A 160 LYS A 168 -1 O LYS A 163 N MET A 151 SHEET 3 D 8 ALA A 173 GLN A 181 -1 O ASN A 179 N THR A 162 SHEET 4 D 8 THR A 300 PRO A 311 -1 O LEU A 307 N VAL A 174 SHEET 5 D 8 PHE A 260 HIS A 267 -1 N ALA A 263 O TRP A 308 SHEET 6 D 8 TRP A 252 LEU A 256 -1 N VAL A 253 O TRP A 264 SHEET 7 D 8 GLY A 220 SER A 224 -1 N ALA A 222 O ALA A 254 SHEET 8 D 8 GLU A 231 TYR A 233 -1 O TYR A 233 N ALA A 221 SHEET 1 E10 ALA B 137 VAL B 139 0 SHEET 2 E10 LEU B 60 LYS B 64 1 N SER B 62 O TYR B 138 SHEET 3 E10 ASP B 69 ASN B 73 -1 O LEU B 70 N VAL B 63 SHEET 4 E10 ASP B 78 PRO B 88 -1 O LEU B 83 N ASP B 69 SHEET 5 E10 PRO B 96 SER B 103 -1 O PHE B 97 N LEU B 84 SHEET 6 E10 PHE B 106 THR B 115 -1 O PHE B 106 N SER B 103 SHEET 7 E10 LEU B 188 SER B 199 -1 O GLN B 195 N GLN B 111 SHEET 8 E10 ILE B 283 LYS B 289 -1 O ILE B 286 N LEU B 196 SHEET 9 E10 THR B 271 ASN B 278 -1 N ALA B 277 O ALA B 285 SHEET 10 E10 ASN B 245 LYS B 249 -1 N ILE B 246 O PHE B 274 SHEET 1 F 7 ALA B 137 VAL B 139 0 SHEET 2 F 7 LEU B 60 LYS B 64 1 N SER B 62 O TYR B 138 SHEET 3 F 7 ASP B 69 ASN B 73 -1 O LEU B 70 N VAL B 63 SHEET 4 F 7 ASP B 78 PRO B 88 -1 O LEU B 83 N ASP B 69 SHEET 5 F 7 PHE B 106 THR B 115 -1 O ALA B 110 N VAL B 79 SHEET 6 F 7 LEU B 188 SER B 199 -1 O GLN B 195 N GLN B 111 SHEET 7 F 7 VAL B 293 VAL B 295 -1 O VAL B 293 N ILE B 190 SHEET 1 G 5 VAL B 293 VAL B 295 0 SHEET 2 G 5 LEU B 188 SER B 199 -1 N ILE B 190 O VAL B 293 SHEET 3 G 5 ILE B 283 LYS B 289 -1 O ILE B 286 N LEU B 196 SHEET 4 G 5 THR B 271 ASN B 278 -1 N ALA B 277 O ALA B 285 SHEET 5 G 5 ASN B 245 LYS B 249 -1 N ILE B 246 O PHE B 274 SHEET 1 H 8 GLU B 146 THR B 154 0 SHEET 2 H 8 THR B 160 LYS B 168 -1 O PHE B 161 N TYR B 153 SHEET 3 H 8 ALA B 173 GLN B 181 -1 O ASN B 177 N THR B 164 SHEET 4 H 8 SER B 305 PRO B 311 -1 O LEU B 307 N VAL B 174 SHEET 5 H 8 PHE B 260 PRO B 266 -1 N ILE B 265 O THR B 306 SHEET 6 H 8 TRP B 252 GLN B 257 -1 N MET B 255 O THR B 262 SHEET 7 H 8 GLY B 220 SER B 224 -1 N GLY B 220 O LEU B 256 SHEET 8 H 8 GLU B 231 TYR B 233 -1 O TYR B 233 N ALA B 221 SHEET 1 I 4 GLU B 146 THR B 154 0 SHEET 2 I 4 THR B 160 LYS B 168 -1 O PHE B 161 N TYR B 153 SHEET 3 I 4 ALA B 173 GLN B 181 -1 O ASN B 177 N THR B 164 SHEET 4 I 4 THR B 300 MET B 303 -1 O GLY B 301 N VAL B 180 CRYST1 42.729 76.011 91.318 78.08 82.45 77.55 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023403 -0.005167 -0.002188 0.00000 SCALE2 0.000000 0.013473 -0.002524 0.00000 SCALE3 0.000000 0.000000 0.011239 0.00000