PDB Short entry for 3ZJB HEADER SIGNALING PROTEIN 17-JAN-13 3ZJB TITLE THE STRUCTURE OF THE TRAF DOMAIN OF HUMAN TRAF4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TNF RECEPTOR-ASSOCIATED FACTOR 4; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: MATH DOMAIN, RESIDUES 283-470; COMPND 5 SYNONYM: CYSTEINE-RICH DOMAIN ASSOCIATED WITH RING AND TRAF DOMAINS COMPND 6 PROTEIN 1, METASTATIC LYMPH NODE GENE 62 PROTEIN, MLN 62, RING FINGER COMPND 7 PROTEIN 83; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.G.MCEWEN,P.POUSSIN-COURMONTAGNE,A.ROUSSEAU,D.ROGNA,Y.NOMINE,M.- AUTHOR 2 C.RIO,C.TOMASETTO,F.ALPY REVDAT 3 20-DEC-23 3ZJB 1 REMARK REVDAT 2 18-DEC-13 3ZJB 1 JRNL REVDAT 1 04-DEC-13 3ZJB 0 JRNL AUTH A.ROUSSEAU,A.G.MCEWEN,P.POUSSIN-COURMONTAGNE,D.ROGNAN, JRNL AUTH 2 Y.NOMINE,M.-C.RIO,C.TOMASETTO,F.ALPY JRNL TITL TRAF4 IS A NOVEL PHOSPHOINOSITIDE-BINDING PROTEIN MODULATING JRNL TITL 2 TIGHT JUNCTIONS AND FAVORING CELL MIGRATION. JRNL REF PLOS BIOL. V. 11 1726 2013 JRNL REFN ISSN 1544-9173 JRNL PMID 24311986 JRNL DOI 10.1371/JOURNAL.PBIO.1001726 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 45095 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2292 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.89 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.46 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2311 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2568 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2193 REMARK 3 BIN R VALUE (WORKING SET) : 0.2558 REMARK 3 BIN FREE R VALUE : 0.2755 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.11 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 118 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4285 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 575 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.45480 REMARK 3 B22 (A**2) : -0.57720 REMARK 3 B33 (A**2) : 1.03200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.14390 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.222 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.141 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.125 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.134 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.123 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4478 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6062 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1579 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 109 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 666 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4478 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 532 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5341 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.86 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.91 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|285 - A|464} REMARK 3 ORIGIN FOR THE GROUP (A): -3.7415 -30.3114 60.3273 REMARK 3 T TENSOR REMARK 3 T11: -0.0230 T22: -0.0670 REMARK 3 T33: -0.0336 T12: 0.0066 REMARK 3 T13: -0.0070 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.5954 L22: 1.0506 REMARK 3 L33: 1.2774 L12: -0.2849 REMARK 3 L13: -0.0430 L23: -0.0925 REMARK 3 S TENSOR REMARK 3 S11: 0.0594 S12: 0.0420 S13: 0.0146 REMARK 3 S21: -0.1458 S22: -0.0209 S23: 0.0846 REMARK 3 S31: 0.0236 S32: -0.0060 S33: -0.0384 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {B|286 - B|471} REMARK 3 ORIGIN FOR THE GROUP (A): -10.7127 -1.9758 44.6079 REMARK 3 T TENSOR REMARK 3 T11: -0.0665 T22: -0.0389 REMARK 3 T33: -0.0621 T12: -0.0011 REMARK 3 T13: -0.0018 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.7426 L22: 0.9729 REMARK 3 L33: 1.4072 L12: -0.0190 REMARK 3 L13: -0.0446 L23: -0.3820 REMARK 3 S TENSOR REMARK 3 S11: 0.0558 S12: 0.0610 S13: -0.0244 REMARK 3 S21: -0.0475 S22: 0.0015 S23: 0.0258 REMARK 3 S31: 0.0341 S32: -0.0765 S33: -0.0573 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {C|287 - C|464} REMARK 3 ORIGIN FOR THE GROUP (A): -7.8019 -1.7573 77.4570 REMARK 3 T TENSOR REMARK 3 T11: -0.0450 T22: -0.0354 REMARK 3 T33: -0.0686 T12: 0.0020 REMARK 3 T13: 0.0020 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.7044 L22: 1.1749 REMARK 3 L33: 1.2917 L12: -0.2138 REMARK 3 L13: -0.1490 L23: 0.0223 REMARK 3 S TENSOR REMARK 3 S11: 0.0524 S12: -0.0071 S13: 0.0038 REMARK 3 S21: 0.0084 S22: 0.0093 S23: -0.0074 REMARK 3 S31: -0.1000 S32: -0.0205 S33: -0.0618 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZJB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1290055395. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : SI (111) MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46352 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 58.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 1.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1CA9 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 4000, 0.1M HEPES PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.72000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 282 REMARK 465 ALA A 283 REMARK 465 LEU A 284 REMARK 465 TRP A 423 REMARK 465 ARG A 424 REMARK 465 GLY A 425 REMARK 465 SER A 426 REMARK 465 LEU A 427 REMARK 465 ASP A 428 REMARK 465 GLU A 429 REMARK 465 SER A 430 REMARK 465 PRO A 465 REMARK 465 ARG A 466 REMARK 465 LYS A 467 REMARK 465 ILE A 468 REMARK 465 LEU A 469 REMARK 465 SER A 470 REMARK 465 LEU A 471 REMARK 465 GLU A 472 REMARK 465 HIS A 473 REMARK 465 HIS A 474 REMARK 465 HIS A 475 REMARK 465 HIS A 476 REMARK 465 HIS A 477 REMARK 465 HIS A 478 REMARK 465 MET B 282 REMARK 465 ALA B 283 REMARK 465 LEU B 284 REMARK 465 VAL B 285 REMARK 465 THR B 422 REMARK 465 TRP B 423 REMARK 465 GLU B 472 REMARK 465 HIS B 473 REMARK 465 HIS B 474 REMARK 465 HIS B 475 REMARK 465 HIS B 476 REMARK 465 HIS B 477 REMARK 465 HIS B 478 REMARK 465 MET C 282 REMARK 465 ALA C 283 REMARK 465 LEU C 284 REMARK 465 VAL C 285 REMARK 465 SER C 286 REMARK 465 TRP C 423 REMARK 465 ARG C 424 REMARK 465 GLY C 425 REMARK 465 SER C 426 REMARK 465 LEU C 427 REMARK 465 ASP C 428 REMARK 465 PRO C 465 REMARK 465 ARG C 466 REMARK 465 LYS C 467 REMARK 465 ILE C 468 REMARK 465 LEU C 469 REMARK 465 SER C 470 REMARK 465 LEU C 471 REMARK 465 GLU C 472 REMARK 465 HIS C 473 REMARK 465 HIS C 474 REMARK 465 HIS C 475 REMARK 465 HIS C 476 REMARK 465 HIS C 477 REMARK 465 HIS C 478 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 402 76.93 -112.79 REMARK 500 LEU A 432 36.84 -84.99 REMARK 500 LYS A 438 61.29 -116.11 REMARK 500 ASN A 449 45.28 -77.38 REMARK 500 LEU B 432 -74.18 -48.77 REMARK 500 LYS B 438 59.32 -119.23 REMARK 500 ARG B 448 -143.06 48.20 REMARK 500 GLN C 393 45.26 -76.94 REMARK 500 LYS C 438 59.93 -117.07 REMARK 500 ARG C 448 -136.49 51.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2138 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH B2136 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH C2119 DISTANCE = 6.43 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 1465 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1472 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1465 DBREF 3ZJB A 283 470 UNP Q9BUZ4 TRAF4_HUMAN 283 470 DBREF 3ZJB B 283 470 UNP Q9BUZ4 TRAF4_HUMAN 283 470 DBREF 3ZJB C 283 470 UNP Q9BUZ4 TRAF4_HUMAN 283 470 SEQADV 3ZJB MET A 282 UNP Q9BUZ4 CLONING ARTIFACT SEQADV 3ZJB LEU A 471 UNP Q9BUZ4 EXPRESSION TAG SEQADV 3ZJB GLU A 472 UNP Q9BUZ4 EXPRESSION TAG SEQADV 3ZJB HIS A 473 UNP Q9BUZ4 EXPRESSION TAG SEQADV 3ZJB HIS A 474 UNP Q9BUZ4 EXPRESSION TAG SEQADV 3ZJB HIS A 475 UNP Q9BUZ4 EXPRESSION TAG SEQADV 3ZJB HIS A 476 UNP Q9BUZ4 EXPRESSION TAG SEQADV 3ZJB HIS A 477 UNP Q9BUZ4 EXPRESSION TAG SEQADV 3ZJB HIS A 478 UNP Q9BUZ4 EXPRESSION TAG SEQADV 3ZJB MET B 282 UNP Q9BUZ4 CLONING ARTIFACT SEQADV 3ZJB LEU B 471 UNP Q9BUZ4 EXPRESSION TAG SEQADV 3ZJB GLU B 472 UNP Q9BUZ4 EXPRESSION TAG SEQADV 3ZJB HIS B 473 UNP Q9BUZ4 EXPRESSION TAG SEQADV 3ZJB HIS B 474 UNP Q9BUZ4 EXPRESSION TAG SEQADV 3ZJB HIS B 475 UNP Q9BUZ4 EXPRESSION TAG SEQADV 3ZJB HIS B 476 UNP Q9BUZ4 EXPRESSION TAG SEQADV 3ZJB HIS B 477 UNP Q9BUZ4 EXPRESSION TAG SEQADV 3ZJB HIS B 478 UNP Q9BUZ4 EXPRESSION TAG SEQADV 3ZJB MET C 282 UNP Q9BUZ4 CLONING ARTIFACT SEQADV 3ZJB LEU C 471 UNP Q9BUZ4 EXPRESSION TAG SEQADV 3ZJB GLU C 472 UNP Q9BUZ4 EXPRESSION TAG SEQADV 3ZJB HIS C 473 UNP Q9BUZ4 EXPRESSION TAG SEQADV 3ZJB HIS C 474 UNP Q9BUZ4 EXPRESSION TAG SEQADV 3ZJB HIS C 475 UNP Q9BUZ4 EXPRESSION TAG SEQADV 3ZJB HIS C 476 UNP Q9BUZ4 EXPRESSION TAG SEQADV 3ZJB HIS C 477 UNP Q9BUZ4 EXPRESSION TAG SEQADV 3ZJB HIS C 478 UNP Q9BUZ4 EXPRESSION TAG SEQRES 1 A 197 MET ALA LEU VAL SER ARG GLN ARG GLN GLU LEU GLN GLU SEQRES 2 A 197 LEU ARG ARG GLU LEU GLU GLU LEU SER VAL GLY SER ASP SEQRES 3 A 197 GLY VAL LEU ILE TRP LYS ILE GLY SER TYR GLY ARG ARG SEQRES 4 A 197 LEU GLN GLU ALA LYS ALA LYS PRO ASN LEU GLU CYS PHE SEQRES 5 A 197 SER PRO ALA PHE TYR THR HIS LYS TYR GLY TYR LYS LEU SEQRES 6 A 197 GLN VAL SER ALA PHE LEU ASN GLY ASN GLY SER GLY GLU SEQRES 7 A 197 GLY THR HIS LEU SER LEU TYR ILE ARG VAL LEU PRO GLY SEQRES 8 A 197 ALA PHE ASP ASN LEU LEU GLU TRP PRO PHE ALA ARG ARG SEQRES 9 A 197 VAL THR PHE SER LEU LEU ASP GLN SER ASP PRO GLY LEU SEQRES 10 A 197 ALA LYS PRO GLN HIS VAL THR GLU THR PHE HIS PRO ASP SEQRES 11 A 197 PRO ASN TRP LYS ASN PHE GLN LYS PRO GLY THR TRP ARG SEQRES 12 A 197 GLY SER LEU ASP GLU SER SER LEU GLY PHE GLY TYR PRO SEQRES 13 A 197 LYS PHE ILE SER HIS GLN ASP ILE ARG LYS ARG ASN TYR SEQRES 14 A 197 VAL ARG ASP ASP ALA VAL PHE ILE ARG ALA ALA VAL GLU SEQRES 15 A 197 LEU PRO ARG LYS ILE LEU SER LEU GLU HIS HIS HIS HIS SEQRES 16 A 197 HIS HIS SEQRES 1 B 197 MET ALA LEU VAL SER ARG GLN ARG GLN GLU LEU GLN GLU SEQRES 2 B 197 LEU ARG ARG GLU LEU GLU GLU LEU SER VAL GLY SER ASP SEQRES 3 B 197 GLY VAL LEU ILE TRP LYS ILE GLY SER TYR GLY ARG ARG SEQRES 4 B 197 LEU GLN GLU ALA LYS ALA LYS PRO ASN LEU GLU CYS PHE SEQRES 5 B 197 SER PRO ALA PHE TYR THR HIS LYS TYR GLY TYR LYS LEU SEQRES 6 B 197 GLN VAL SER ALA PHE LEU ASN GLY ASN GLY SER GLY GLU SEQRES 7 B 197 GLY THR HIS LEU SER LEU TYR ILE ARG VAL LEU PRO GLY SEQRES 8 B 197 ALA PHE ASP ASN LEU LEU GLU TRP PRO PHE ALA ARG ARG SEQRES 9 B 197 VAL THR PHE SER LEU LEU ASP GLN SER ASP PRO GLY LEU SEQRES 10 B 197 ALA LYS PRO GLN HIS VAL THR GLU THR PHE HIS PRO ASP SEQRES 11 B 197 PRO ASN TRP LYS ASN PHE GLN LYS PRO GLY THR TRP ARG SEQRES 12 B 197 GLY SER LEU ASP GLU SER SER LEU GLY PHE GLY TYR PRO SEQRES 13 B 197 LYS PHE ILE SER HIS GLN ASP ILE ARG LYS ARG ASN TYR SEQRES 14 B 197 VAL ARG ASP ASP ALA VAL PHE ILE ARG ALA ALA VAL GLU SEQRES 15 B 197 LEU PRO ARG LYS ILE LEU SER LEU GLU HIS HIS HIS HIS SEQRES 16 B 197 HIS HIS SEQRES 1 C 197 MET ALA LEU VAL SER ARG GLN ARG GLN GLU LEU GLN GLU SEQRES 2 C 197 LEU ARG ARG GLU LEU GLU GLU LEU SER VAL GLY SER ASP SEQRES 3 C 197 GLY VAL LEU ILE TRP LYS ILE GLY SER TYR GLY ARG ARG SEQRES 4 C 197 LEU GLN GLU ALA LYS ALA LYS PRO ASN LEU GLU CYS PHE SEQRES 5 C 197 SER PRO ALA PHE TYR THR HIS LYS TYR GLY TYR LYS LEU SEQRES 6 C 197 GLN VAL SER ALA PHE LEU ASN GLY ASN GLY SER GLY GLU SEQRES 7 C 197 GLY THR HIS LEU SER LEU TYR ILE ARG VAL LEU PRO GLY SEQRES 8 C 197 ALA PHE ASP ASN LEU LEU GLU TRP PRO PHE ALA ARG ARG SEQRES 9 C 197 VAL THR PHE SER LEU LEU ASP GLN SER ASP PRO GLY LEU SEQRES 10 C 197 ALA LYS PRO GLN HIS VAL THR GLU THR PHE HIS PRO ASP SEQRES 11 C 197 PRO ASN TRP LYS ASN PHE GLN LYS PRO GLY THR TRP ARG SEQRES 12 C 197 GLY SER LEU ASP GLU SER SER LEU GLY PHE GLY TYR PRO SEQRES 13 C 197 LYS PHE ILE SER HIS GLN ASP ILE ARG LYS ARG ASN TYR SEQRES 14 C 197 VAL ARG ASP ASP ALA VAL PHE ILE ARG ALA ALA VAL GLU SEQRES 15 C 197 LEU PRO ARG LYS ILE LEU SER LEU GLU HIS HIS HIS HIS SEQRES 16 C 197 HIS HIS HET CL A1465 1 HET CL B1472 1 HET CL C1465 1 HETNAM CL CHLORIDE ION FORMUL 4 CL 3(CL 1-) FORMUL 7 HOH *575(H2 O) HELIX 1 1 VAL A 285 LEU A 302 1 18 HELIX 2 2 SER A 316 LYS A 327 1 12 HELIX 3 3 ASN A 355 GLU A 359 5 5 HELIX 4 4 PHE A 374 LEU A 378 5 5 HELIX 5 5 TRP A 414 GLN A 418 5 5 HELIX 6 6 HIS A 442 ARG A 446 1 5 HELIX 7 7 SER B 286 LEU B 302 1 17 HELIX 8 8 SER B 316 LYS B 327 1 12 HELIX 9 9 ASN B 355 GLU B 359 5 5 HELIX 10 10 PHE B 374 LEU B 378 5 5 HELIX 11 11 TRP B 414 GLN B 418 5 5 HELIX 12 12 HIS B 442 ARG B 446 1 5 HELIX 13 13 ARG C 287 LEU C 302 1 16 HELIX 14 14 SER C 316 LYS C 327 1 12 HELIX 15 15 ASN C 355 GLU C 359 5 5 HELIX 16 16 PHE C 374 LEU C 378 5 5 HELIX 17 17 TRP C 414 GLN C 418 5 5 HELIX 18 18 HIS C 442 ARG C 446 1 5 SHEET 1 AA 4 VAL A 309 ILE A 314 0 SHEET 2 AA 4 VAL A 456 VAL A 462 -1 O VAL A 456 N ILE A 314 SHEET 3 AA 4 VAL A 386 LEU A 390 -1 O THR A 387 N ALA A 461 SHEET 4 AA 4 VAL A 404 PHE A 408 -1 O VAL A 404 N LEU A 390 SHEET 1 AB 2 CYS A 332 PHE A 333 0 SHEET 2 AB 2 LYS A 345 PHE A 351 -1 O ALA A 350 N CYS A 332 SHEET 1 AC 2 PHE A 337 TYR A 338 0 SHEET 2 AC 2 LYS A 345 PHE A 351 -1 O LEU A 346 N PHE A 337 SHEET 1 AD 4 PHE A 434 SER A 441 0 SHEET 2 AD 4 HIS A 362 LEU A 370 -1 O LEU A 363 N PHE A 439 SHEET 3 AD 4 LYS A 345 PHE A 351 -1 O LYS A 345 N LEU A 370 SHEET 4 AD 4 PHE A 337 TYR A 338 -1 O PHE A 337 N LEU A 346 SHEET 1 AE 4 PHE A 434 SER A 441 0 SHEET 2 AE 4 HIS A 362 LEU A 370 -1 O LEU A 363 N PHE A 439 SHEET 3 AE 4 LYS A 345 PHE A 351 -1 O LYS A 345 N LEU A 370 SHEET 4 AE 4 CYS A 332 PHE A 333 -1 O CYS A 332 N ALA A 350 SHEET 1 BA 4 VAL B 309 ILE B 314 0 SHEET 2 BA 4 VAL B 456 VAL B 462 -1 O VAL B 456 N ILE B 314 SHEET 3 BA 4 VAL B 386 LEU B 390 -1 O THR B 387 N ALA B 461 SHEET 4 BA 4 VAL B 404 PHE B 408 -1 O VAL B 404 N LEU B 390 SHEET 1 BB 2 CYS B 332 PHE B 333 0 SHEET 2 BB 2 LYS B 345 PHE B 351 -1 O ALA B 350 N CYS B 332 SHEET 1 BC 2 PHE B 337 TYR B 338 0 SHEET 2 BC 2 LYS B 345 PHE B 351 -1 O LEU B 346 N PHE B 337 SHEET 1 BD 4 PHE B 434 SER B 441 0 SHEET 2 BD 4 HIS B 362 LEU B 370 -1 O LEU B 363 N PHE B 439 SHEET 3 BD 4 LYS B 345 PHE B 351 -1 O LYS B 345 N LEU B 370 SHEET 4 BD 4 PHE B 337 TYR B 338 -1 O PHE B 337 N LEU B 346 SHEET 1 BE 4 PHE B 434 SER B 441 0 SHEET 2 BE 4 HIS B 362 LEU B 370 -1 O LEU B 363 N PHE B 439 SHEET 3 BE 4 LYS B 345 PHE B 351 -1 O LYS B 345 N LEU B 370 SHEET 4 BE 4 CYS B 332 PHE B 333 -1 O CYS B 332 N ALA B 350 SHEET 1 CA 4 VAL C 309 ILE C 314 0 SHEET 2 CA 4 VAL C 456 VAL C 462 -1 O VAL C 456 N ILE C 314 SHEET 3 CA 4 VAL C 386 LEU C 390 -1 O THR C 387 N ALA C 461 SHEET 4 CA 4 VAL C 404 PHE C 408 -1 O VAL C 404 N LEU C 390 SHEET 1 CB 2 CYS C 332 PHE C 333 0 SHEET 2 CB 2 LYS C 345 PHE C 351 -1 O ALA C 350 N CYS C 332 SHEET 1 CC 2 PHE C 337 TYR C 338 0 SHEET 2 CC 2 LYS C 345 PHE C 351 -1 O LEU C 346 N PHE C 337 SHEET 1 CD 4 PHE C 434 SER C 441 0 SHEET 2 CD 4 HIS C 362 LEU C 370 -1 O LEU C 363 N PHE C 439 SHEET 3 CD 4 LYS C 345 PHE C 351 -1 O LYS C 345 N LEU C 370 SHEET 4 CD 4 PHE C 337 TYR C 338 -1 O PHE C 337 N LEU C 346 SHEET 1 CE 4 PHE C 434 SER C 441 0 SHEET 2 CE 4 HIS C 362 LEU C 370 -1 O LEU C 363 N PHE C 439 SHEET 3 CE 4 LYS C 345 PHE C 351 -1 O LYS C 345 N LEU C 370 SHEET 4 CE 4 CYS C 332 PHE C 333 -1 O CYS C 332 N ALA C 350 CISPEP 1 TRP A 380 PRO A 381 0 2.52 CISPEP 2 TRP B 380 PRO B 381 0 -0.66 CISPEP 3 TRP C 380 PRO C 381 0 3.09 SITE 1 AC1 5 TYR C 338 LYS C 341 TYR C 342 PHE C 374 SITE 2 AC1 5 HOH C2007 SITE 1 AC2 2 ASP B 453 ASP B 454 SITE 1 AC3 3 TRP A 380 GLN A 418 LYS A 419 CRYST1 54.620 85.440 61.650 90.00 108.08 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018308 0.000000 0.005977 0.00000 SCALE2 0.000000 0.011704 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017063 0.00000