PDB Short entry for 3ZPM HEADER SURFACTANT PROTEIN 28-FEB-13 3ZPM TITLE SOLUTION STRUCTURE OF LATHERIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LATHERIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 21-228; COMPND 5 SYNONYM: DANDER ALLERGEN EQU C 4/EQU C 5, EQU C 4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EQUUS CABALLUS; SOURCE 3 ORGANISM_COMMON: HORSE; SOURCE 4 ORGANISM_TAXID: 9796; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-32 KEYWDS PLUNC, BPI, SURFACTANT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.J.VANCE,R.E.MACDONALD,A.COOPER,M.W.KENNEDY,B.O.SMITH REVDAT 5 14-JUN-23 3ZPM 1 JRNL REMARK REVDAT 4 02-MAY-18 3ZPM 1 JRNL ATOM REVDAT 3 15-JAN-14 3ZPM 1 JRNL REVDAT 2 03-JUL-13 3ZPM 1 JRNL REVDAT 1 26-JUN-13 3ZPM 0 JRNL AUTH S.J.VANCE,R.E.MCDONALD,A.COOPER,B.O.SMITH,M.W.KENNEDY JRNL TITL THE STRUCTURE OF LATHERIN, A SURFACTANT ALLERGEN PROTEIN JRNL TITL 2 FROM HORSE SWEAT AND SALIVA. JRNL REF J R SOC INTERFACE V. 10 30453 2013 JRNL REFN ISSN 1742-5662 JRNL PMID 23782536 JRNL DOI 10.1098/RSIF.2013.0453 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.E.MCDONALD,R.I.FLEMING,J.G.BEELEY,D.L.BOVELL,J.R.LU, REMARK 1 AUTH 2 X.ZHAO,A.COOPER,M.W.KENNEDY REMARK 1 TITL LATHERIN: A SURFACTANT PROTEIN OF HORSE SWEAT AND SALIVA. REMARK 1 REF PLOS ONE V. 4 E5726 2009 REMARK 1 REFN ESSN 1932-6203 REMARK 1 PMID 19478940 REMARK 1 DOI 10.1371/JOURNAL.PONE.0005726 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.J.VANCE REMARK 1 TITL THE RELATIONSHIP BETWEEN STRUCTURE AND FUNCTION IN NATURAL REMARK 1 TITL 2 SURFACTANT PROTEINS REMARK 1 EDIT A REMARK 1 REF PH D THESIS 2012 REMARK 1 PUBL N/A: INSTITUTE (THESIS) REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT USING NOE, H-BOND AND RDC REMARK 3 RESTRAINTS USING ARIA2 AND CNS. DETAILS CAN BE FOUND IN THE JRNL REMARK 3 CITATION ABOVE. REMARK 4 REMARK 4 3ZPM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1290055948. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310.0 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 0.07 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N-HSQC; CBCA(CO)NH; CCCONH; REMARK 210 HNCACB; HNCACO; HNCO; HBHA(CO)NH; REMARK 210 HBHANH; HCCCONH; BMX C_NOESY; C REMARK 210 HSQC B; CH3_TOCSY; HCCONH B MX N_ REMARK 210 NOESY; CHCH3_TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS 2.1, CCPNMR REMARK 210 ANALYSIS 2.2, CCPNMR ANALYSIS REMARK 210 2.0, DANGLE 1.1, TOPSPIN 1.3, REMARK 210 CNS 1.2 REMARK 210 METHOD USED : AS PER PUBLICATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED LATHERIN. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 23 44.07 -168.31 REMARK 500 1 ASN A 32 90.55 -62.08 REMARK 500 1 LEU A 47 -60.51 -136.08 REMARK 500 1 LEU A 48 -91.55 -112.69 REMARK 500 1 LEU A 55 85.45 54.97 REMARK 500 1 ALA A 61 163.34 179.58 REMARK 500 1 LEU A 71 -154.76 -101.99 REMARK 500 1 PRO A 79 76.76 -64.94 REMARK 500 1 ASP A 80 -0.81 67.64 REMARK 500 1 LEU A 148 51.82 -90.92 REMARK 500 1 SER A 149 -157.46 -150.97 REMARK 500 1 PRO A 151 89.55 -30.60 REMARK 500 1 VAL A 152 25.78 43.08 REMARK 500 1 ASN A 153 21.57 49.03 REMARK 500 1 LEU A 156 -78.25 -121.00 REMARK 500 1 ASN A 203 72.48 178.19 REMARK 500 1 VAL A 204 -56.46 54.77 REMARK 500 1 ASP A 205 -20.49 -142.68 REMARK 500 1 LEU A 206 107.60 71.31 REMARK 500 1 SER A 207 66.15 61.28 REMARK 500 2 MET A -1 -60.70 -139.16 REMARK 500 2 ALA A 0 -59.30 -162.28 REMARK 500 2 GLN A 2 -62.21 70.37 REMARK 500 2 ASN A 23 72.86 58.77 REMARK 500 2 ASN A 49 -25.89 172.90 REMARK 500 2 GLN A 66 -61.91 -106.89 REMARK 500 2 LEU A 71 -151.60 -98.29 REMARK 500 2 ASP A 80 -28.33 75.46 REMARK 500 2 ASP A 121 -163.45 -103.37 REMARK 500 2 PRO A 151 71.10 -67.22 REMARK 500 2 VAL A 204 43.48 -93.31 REMARK 500 3 ALA A 0 -76.39 -92.63 REMARK 500 3 ASN A 23 41.97 -176.52 REMARK 500 3 ASN A 32 88.45 -60.81 REMARK 500 3 ASN A 49 -30.60 -162.28 REMARK 500 3 LEU A 55 -93.89 -105.46 REMARK 500 3 LEU A 56 91.31 58.13 REMARK 500 3 GLN A 66 -61.06 -102.50 REMARK 500 3 LEU A 71 -157.02 -102.90 REMARK 500 3 SER A 81 177.84 74.43 REMARK 500 3 CYS A 133 79.14 -152.70 REMARK 500 3 GLN A 143 75.33 -109.35 REMARK 500 3 VAL A 152 -161.63 -107.85 REMARK 500 3 ASN A 153 -59.16 73.46 REMARK 500 3 LEU A 186 -161.59 -78.45 REMARK 500 4 ALA A 0 -160.22 -129.07 REMARK 500 4 VAL A 52 -72.57 -99.37 REMARK 500 4 PRO A 54 33.03 -74.72 REMARK 500 4 PRO A 58 92.00 -57.19 REMARK 500 4 SER A 59 53.38 -118.09 REMARK 500 REMARK 500 THIS ENTRY HAS 316 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19067 RELATED DB: BMRB DBREF 3ZPM A 1 208 UNP P82615 LATH_HORSE 21 228 SEQADV 3ZPM ALA A -2 UNP P82615 EXPRESSION TAG SEQADV 3ZPM MET A -1 UNP P82615 EXPRESSION TAG SEQADV 3ZPM ALA A 0 UNP P82615 EXPRESSION TAG SEQRES 1 A 211 ALA MET ALA GLN GLN ILE PRO PRO GLU VAL SER SER GLN SEQRES 2 A 211 ILE THR ASP ALA LEU THR GLN GLY LEU LEU ASP GLY ASN SEQRES 3 A 211 PHE LEU SER LEU LEU ASN ALA ILE ASN LEU GLU GLY LEU SEQRES 4 A 211 LEU ASN THR ILE LEU ASP GLN VAL THR GLY LEU LEU ASN SEQRES 5 A 211 ILE LEU VAL GLY PRO LEU LEU GLY PRO SER ASP ALA GLU SEQRES 6 A 211 ILE LYS LEU GLN ASP THR ARG LEU LEU GLN LEU SER LEU SEQRES 7 A 211 GLU PHE SER PRO ASP SER LYS GLY ILE ASP ILE TRP ILE SEQRES 8 A 211 PRO LEU GLU LEU SER VAL TYR LEU LYS LEU LEU ILE LEU SEQRES 9 A 211 GLU PRO LEU THR LEU TYR VAL ARG THR ASP ILE ARG VAL SEQRES 10 A 211 GLN LEU ARG LEU GLU SER ASP GLU ASP GLY LYS TYR ARG SEQRES 11 A 211 LEU ALA PHE GLY HIS CYS SER LEU LEU PRO ARG ALA ILE SEQRES 12 A 211 GLU LEU GLN SER GLY ASN PRO LEU SER LEU PRO VAL ASN SEQRES 13 A 211 ALA VAL LEU GLY THR ILE GLU ASN ALA LEU GLY ASN PHE SEQRES 14 A 211 ILE THR GLU ASP LEU GLY ALA GLY LEU CYS PRO THR LEU SEQRES 15 A 211 ASN SER LEU VAL SER ASN LEU ASP LEU GLN LEU VAL ASN SEQRES 16 A 211 ASN LEU ILE ASN LEU ILE LEU ASP ARG ALA ASN VAL ASP SEQRES 17 A 211 LEU SER VAL HELIX 1 1 PRO A 4 GLY A 22 1 19 HELIX 2 2 ASN A 23 ILE A 31 1 9 HELIX 3 3 LEU A 33 THR A 45 1 13 HELIX 4 4 LEU A 150 VAL A 155 5 6 HELIX 5 5 LEU A 156 GLU A 169 1 14 HELIX 6 6 ASP A 170 LEU A 175 1 6 HELIX 7 7 LEU A 175 VAL A 183 1 9 HELIX 8 8 ASP A 187 VAL A 204 1 18 SHEET 1 AA 2 ALA A 61 LEU A 65 0 SHEET 2 AA 2 GLY A 83 LEU A 98 -1 O TYR A 95 N LYS A 64 SHEET 1 AB 2 ARG A 69 LEU A 70 0 SHEET 2 AB 2 GLY A 83 LEU A 98 -1 O GLU A 91 N ARG A 69 SHEET 1 AC 2 SER A 74 PHE A 77 0 SHEET 2 AC 2 GLY A 83 LEU A 98 -1 O ASP A 85 N GLU A 76 SHEET 1 AD 4 TYR A 126 SER A 144 0 SHEET 2 AD 4 LEU A 104 SER A 120 -1 O THR A 105 N GLN A 143 SHEET 3 AD 4 GLY A 83 LEU A 98 -1 O ILE A 84 N LEU A 116 SHEET 4 AD 4 SER A 74 PHE A 77 -1 O SER A 74 N TRP A 87 SHEET 1 AE 4 TYR A 126 SER A 144 0 SHEET 2 AE 4 LEU A 104 SER A 120 -1 O THR A 105 N GLN A 143 SHEET 3 AE 4 GLY A 83 LEU A 98 -1 O ILE A 84 N LEU A 116 SHEET 4 AE 4 ARG A 69 LEU A 70 -1 O ARG A 69 N GLU A 91 SSBOND 1 CYS A 133 CYS A 176 1555 1555 2.22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000