PDB Short entry for 3ZU7 HEADER TRANSFERASE/DE NOVO PROTEIN 16-JUL-11 3ZU7 TITLE CRYSTAL STRUCTURE OF A DESIGNED SELECTED ANKYRIN REPEAT PROTEIN IN TITLE 2 COMPLEX WITH THE MAP KINASE ERK2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 3-358; COMPND 5 SYNONYM: MAP KINASE 1, MAPK 1, ERT1, EXTRACELLULAR SIGNAL-REGULATED COMPND 6 KINASE 2, ERK-2, MAP KINASE ISOFORM P42, P42-MAPK, MITOGEN-ACTIVATED COMPND 7 PROTEIN KINASE 2, MAP KINASE 2, MAPK 2; COMPND 8 EC: 2.7.11.24; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: DESIGNED ANKYRIN REPEAT PROTEIN; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: NPT75-ERK2; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 16 EXPRESSION_SYSTEM_VARIANT: XL1-BLUE; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PDST67_E40 KEYWDS TRANSFERASE-DE NOVO PROTEIN COMPLEX, TRANSFERASE, SELECTED BINDER, KEYWDS 2 PROTEIN DESIGN EXPDTA X-RAY DIFFRACTION AUTHOR L.KUMMER,P.R.MITTL,A.PLUCKTHUN REVDAT 5 20-DEC-23 3ZU7 1 REMARK REVDAT 4 05-JUL-17 3ZU7 1 REMARK REVDAT 3 10-OCT-12 3ZU7 1 JRNL REVDAT 2 05-SEP-12 3ZU7 1 REVDAT 1 27-JUN-12 3ZU7 0 JRNL AUTH L.KUMMER,P.PARIZEK,P.RUBE,B.MILLGRAMM,A.PRINZ,P.R.MITTL, JRNL AUTH 2 M.KAUFHOLZ,B.ZIMMERMANN,F.W.HERBERG,A.PLUCKTHUN JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF JRNL TITL 2 PHOSPHORYLATION-SPECIFIC BINDERS OF THE KINASE ERK FROM JRNL TITL 3 DESIGNED ANKYRIN REPEAT PROTEIN LIBRARIES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 E2248 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22843676 JRNL DOI 10.1073/PNAS.1205399109 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 38887 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2040 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2965 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3984 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 236 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 0.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.196 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.182 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.110 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4071 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5522 ; 1.957 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 496 ; 6.634 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;39.413 ;24.726 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 710 ;18.549 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.354 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 615 ; 0.164 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3097 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2482 ; 1.159 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4001 ; 1.922 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1589 ; 2.882 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1521 ; 4.327 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 353 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0921 4.9240 5.5126 REMARK 3 T TENSOR REMARK 3 T11: 0.0271 T22: 0.0147 REMARK 3 T33: 0.0456 T12: 0.0090 REMARK 3 T13: 0.0278 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 0.5190 L22: 0.4728 REMARK 3 L33: 0.9507 L12: 0.0831 REMARK 3 L13: 0.0896 L23: 0.2409 REMARK 3 S TENSOR REMARK 3 S11: -0.0623 S12: -0.0647 S13: -0.0992 REMARK 3 S21: 0.0575 S22: -0.0149 S23: -0.0091 REMARK 3 S31: 0.0998 S32: -0.0349 S33: 0.0773 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 13 B 166 REMARK 3 ORIGIN FOR THE GROUP (A): 29.7783 -6.1663 14.2984 REMARK 3 T TENSOR REMARK 3 T11: 0.0611 T22: 0.0268 REMARK 3 T33: 0.0427 T12: 0.0200 REMARK 3 T13: -0.0148 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.9635 L22: 0.4504 REMARK 3 L33: 2.5805 L12: 0.3227 REMARK 3 L13: -1.0922 L23: 0.3587 REMARK 3 S TENSOR REMARK 3 S11: 0.0470 S12: 0.1263 S13: -0.0971 REMARK 3 S21: -0.0613 S22: -0.0053 S23: -0.0259 REMARK 3 S31: 0.0710 S32: -0.0624 S33: -0.0417 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES A 175 - A 179 LIE IN A REGION OF WEAK REMARK 3 ELECTRON DENSITY REMARK 4 REMARK 4 3ZU7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1290048979. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : ELECTRON OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42412 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 5.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.9 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 44.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.16000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1ERK, 1MJ0 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HOAC (PH 8.5), 20% PEG4K, REMARK 280 5 MM CDCL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.02000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.77000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.68500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.77000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.02000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.68500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 ALA A 1 REMARK 465 MET A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 PRO A 9 REMARK 465 PRO A 354 REMARK 465 GLY A 355 REMARK 465 TYR A 356 REMARK 465 ARG A 357 REMARK 465 SER A 358 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 GLY B 11 REMARK 465 SER B 12 REMARK 465 LYS B 167 REMARK 465 LEU B 168 REMARK 465 ASN B 169 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 229 OD2 ASP B 79 2.03 REMARK 500 OD2 ASP A 289 O HOH A 2161 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 21 C - N - CA ANGL. DEV. = -9.8 DEGREES REMARK 500 LEU A 144 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 LEU A 148 CB - CG - CD1 ANGL. DEV. = 13.4 DEGREES REMARK 500 ARG A 299 NE - CZ - NH1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 299 NE - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP B 77 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 77 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP B 110 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 LEU B 114 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 17 85.59 -155.77 REMARK 500 ILE A 29 54.33 -143.63 REMARK 500 THR A 108 -157.73 -153.39 REMARK 500 ARG A 146 -7.81 72.88 REMARK 500 ASN A 156 -158.96 -95.50 REMARK 500 ASP A 165 80.99 90.39 REMARK 500 HIS A 176 -168.10 73.11 REMARK 500 ASP A 177 85.87 -35.74 REMARK 500 THR A 179 150.68 -30.38 REMARK 500 THR A 183 35.33 -93.86 REMARK 500 GLU A 184 64.43 -114.97 REMARK 500 LYS A 201 -97.72 -77.54 REMARK 500 THR A 204 -168.07 -128.01 REMARK 500 ASP A 316 86.48 -150.52 REMARK 500 ASP A 330 129.80 -38.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 35 MET A 36 148.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ERK RELATED DB: PDB REMARK 900 THE COMPLEX STRUCTURE OF THE MAP KINASE ERK2/SB220025 REMARK 900 RELATED ID: 2GPH RELATED DB: PDB REMARK 900 DOCKING MOTIF INTERACTIONS IN THE MAP KINASE ERK2 REMARK 900 RELATED ID: 1GOL RELATED DB: PDB REMARK 900 COORDINATES OF RAT MAP KINASE ERK2 WITH AN ARGININE MUTATION AT REMARK 900 POSITION 52 REMARK 900 RELATED ID: 4ERK RELATED DB: PDB REMARK 900 THE COMPLEX STRUCTURE OF THE MAP KINASE ERK2/ OLOMOUCINE REMARK 900 RELATED ID: 1ERK RELATED DB: PDB REMARK 900 STRUCTURE OF SIGNAL-REGULATED KINASE REMARK 900 RELATED ID: 2ERK RELATED DB: PDB REMARK 900 PHOSPHORYLATED MAP KINASE ERK2 REMARK 900 RELATED ID: 3ZUV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DESIGNED SELECTED ANKYRIN REPEAT PROTEIN IN REMARK 900 COMPLEX WITH THE PHOSPHORYLATED MAP KINASE ERK2 DBREF 3ZU7 A 3 358 UNP P63086 MK01_RAT 3 358 DBREF 3ZU7 B 1 169 PDB 3ZU7 3ZU7 1 169 SEQADV 3ZU7 ALA A -6 UNP P63086 EXPRESSION TAG SEQADV 3ZU7 HIS A -5 UNP P63086 EXPRESSION TAG SEQADV 3ZU7 HIS A -4 UNP P63086 EXPRESSION TAG SEQADV 3ZU7 HIS A -3 UNP P63086 EXPRESSION TAG SEQADV 3ZU7 HIS A -2 UNP P63086 EXPRESSION TAG SEQADV 3ZU7 HIS A -1 UNP P63086 EXPRESSION TAG SEQADV 3ZU7 HIS A 0 UNP P63086 EXPRESSION TAG SEQADV 3ZU7 ALA A 1 UNP P63086 EXPRESSION TAG SEQADV 3ZU7 MET A 2 UNP P63086 EXPRESSION TAG SEQRES 1 A 365 ALA HIS HIS HIS HIS HIS HIS ALA MET ALA ALA ALA ALA SEQRES 2 A 365 ALA GLY PRO GLU MET VAL ARG GLY GLN VAL PHE ASP VAL SEQRES 3 A 365 GLY PRO ARG TYR THR ASN LEU SER TYR ILE GLY GLU GLY SEQRES 4 A 365 ALA TYR GLY MET VAL CYS SER ALA TYR ASP ASN LEU ASN SEQRES 5 A 365 LYS VAL ARG VAL ALA ILE LYS LYS ILE SER PRO PHE GLU SEQRES 6 A 365 HIS GLN THR TYR CYS GLN ARG THR LEU ARG GLU ILE LYS SEQRES 7 A 365 ILE LEU LEU ARG PHE ARG HIS GLU ASN ILE ILE GLY ILE SEQRES 8 A 365 ASN ASP ILE ILE ARG ALA PRO THR ILE GLU GLN MET LYS SEQRES 9 A 365 ASP VAL TYR ILE VAL GLN ASP LEU MET GLU THR ASP LEU SEQRES 10 A 365 TYR LYS LEU LEU LYS THR GLN HIS LEU SER ASN ASP HIS SEQRES 11 A 365 ILE CYS TYR PHE LEU TYR GLN ILE LEU ARG GLY LEU LYS SEQRES 12 A 365 TYR ILE HIS SER ALA ASN VAL LEU HIS ARG ASP LEU LYS SEQRES 13 A 365 PRO SER ASN LEU LEU LEU ASN THR THR CYS ASP LEU LYS SEQRES 14 A 365 ILE CYS ASP PHE GLY LEU ALA ARG VAL ALA ASP PRO ASP SEQRES 15 A 365 HIS ASP HIS THR GLY PHE LEU THR GLU TYR VAL ALA THR SEQRES 16 A 365 ARG TRP TYR ARG ALA PRO GLU ILE MET LEU ASN SER LYS SEQRES 17 A 365 GLY TYR THR LYS SER ILE ASP ILE TRP SER VAL GLY CYS SEQRES 18 A 365 ILE LEU ALA GLU MET LEU SER ASN ARG PRO ILE PHE PRO SEQRES 19 A 365 GLY LYS HIS TYR LEU ASP GLN LEU ASN HIS ILE LEU GLY SEQRES 20 A 365 ILE LEU GLY SER PRO SER GLN GLU ASP LEU ASN CYS ILE SEQRES 21 A 365 ILE ASN LEU LYS ALA ARG ASN TYR LEU LEU SER LEU PRO SEQRES 22 A 365 HIS LYS ASN LYS VAL PRO TRP ASN ARG LEU PHE PRO ASN SEQRES 23 A 365 ALA ASP SER LYS ALA LEU ASP LEU LEU ASP LYS MET LEU SEQRES 24 A 365 THR PHE ASN PRO HIS LYS ARG ILE GLU VAL GLU GLN ALA SEQRES 25 A 365 LEU ALA HIS PRO TYR LEU GLU GLN TYR TYR ASP PRO SER SEQRES 26 A 365 ASP GLU PRO ILE ALA GLU ALA PRO PHE LYS PHE ASP MET SEQRES 27 A 365 GLU LEU ASP ASP LEU PRO LYS GLU LYS LEU LYS GLU LEU SEQRES 28 A 365 ILE PHE GLU GLU THR ALA ARG PHE GLN PRO GLY TYR ARG SEQRES 29 A 365 SER SEQRES 1 B 169 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASP SEQRES 2 B 169 LEU GLY LYS LYS LEU LEU GLU ALA ALA ARG ALA GLY GLN SEQRES 3 B 169 ASP ASP GLU VAL ARG ILE LEU MET ALA ASN GLY ALA ASP SEQRES 4 B 169 VAL ASN ALA HIS ASP ASP GLN GLY SER THR PRO LEU HIS SEQRES 5 B 169 LEU ALA ALA TRP ILE GLY HIS PRO GLU ILE VAL GLU VAL SEQRES 6 B 169 LEU LEU LYS HIS GLY ALA ASP VAL ASN ALA ARG ASP THR SEQRES 7 B 169 ASP GLY TRP THR PRO LEU HIS LEU ALA ALA ASP ASN GLY SEQRES 8 B 169 HIS LEU GLU ILE VAL GLU VAL LEU LEU LYS TYR GLY ALA SEQRES 9 B 169 ASP VAL ASN ALA GLN ASP ALA TYR GLY LEU THR PRO LEU SEQRES 10 B 169 HIS LEU ALA ALA ASP ARG GLY HIS LEU GLU ILE VAL GLU SEQRES 11 B 169 VAL LEU LEU LYS HIS GLY ALA ASP VAL ASN ALA GLN ASP SEQRES 12 B 169 LYS PHE GLY LYS THR ALA PHE ASP ILE SER ILE ASP ASN SEQRES 13 B 169 GLY ASN GLU ASP LEU ALA GLU ILE LEU GLN LYS LEU ASN FORMUL 3 HOH *236(H2 O) HELIX 1 1 HIS A 59 PHE A 76 1 18 HELIX 2 2 LEU A 110 GLN A 117 1 8 HELIX 3 3 SER A 120 ALA A 141 1 22 HELIX 4 4 LYS A 149 SER A 151 5 3 HELIX 5 5 ALA A 193 LEU A 198 1 6 HELIX 6 6 LYS A 205 ASN A 222 1 18 HELIX 7 7 HIS A 230 GLY A 243 1 14 HELIX 8 8 SER A 246 CYS A 252 1 7 HELIX 9 9 ASN A 255 SER A 264 1 10 HELIX 10 10 PRO A 272 PHE A 277 1 6 HELIX 11 11 ASP A 281 LEU A 292 1 12 HELIX 12 12 GLU A 301 ALA A 307 1 7 HELIX 13 13 HIS A 308 GLU A 312 5 5 HELIX 14 14 ASP A 316 GLU A 320 5 5 HELIX 15 15 PRO A 337 THR A 349 1 13 HELIX 16 16 ALA A 350 GLN A 353 5 4 HELIX 17 17 ASP B 13 GLY B 25 1 13 HELIX 18 18 GLN B 26 ASN B 36 1 11 HELIX 19 19 THR B 49 GLY B 58 1 10 HELIX 20 20 HIS B 59 HIS B 69 1 11 HELIX 21 21 THR B 82 GLY B 91 1 10 HELIX 22 22 HIS B 92 TYR B 102 1 11 HELIX 23 23 THR B 115 ARG B 123 1 9 HELIX 24 24 HIS B 125 HIS B 135 1 11 HELIX 25 25 THR B 148 GLY B 157 1 10 HELIX 26 26 ASN B 158 LEU B 165 1 8 SHEET 1 AA 2 MET A 11 VAL A 12 0 SHEET 2 AA 2 GLN A 15 VAL A 16 -1 O GLN A 15 N VAL A 12 SHEET 1 AB 5 TYR A 23 TYR A 28 0 SHEET 2 AB 5 MET A 36 ASP A 42 -1 O SER A 39 N SER A 27 SHEET 3 AB 5 VAL A 47 ILE A 54 -1 O VAL A 47 N ASP A 42 SHEET 4 AB 5 VAL A 99 ASP A 104 -1 O VAL A 99 N ILE A 54 SHEET 5 AB 5 ASP A 86 ARG A 89 -1 O ASP A 86 N VAL A 102 SHEET 1 AC 3 THR A 108 ASP A 109 0 SHEET 2 AC 3 LEU A 153 LEU A 155 -1 O LEU A 155 N THR A 108 SHEET 3 AC 3 LEU A 161 ILE A 163 -1 O LYS A 162 N LEU A 154 SHEET 1 AD 2 VAL A 143 LEU A 144 0 SHEET 2 AD 2 ARG A 170 VAL A 171 -1 O ARG A 170 N LEU A 144 CISPEP 1 THR A 179 GLY A 180 0 0.12 CRYST1 68.040 89.370 99.540 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014697 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011189 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010046 0.00000