PDB Short entry for 3ZUG HEADER TRANSFERASE 19-JUL-11 3ZUG TITLE E268D MUTANT OF FAD SYNTHETASE FROM CORYNEBACTERIUM AMMONIAGENES COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBF; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RIBOFLAVIN KINASE, FLAVOKINASE, FMN ADENYLYLTRANSFERASE, COMPND 5 FAD PYROPHOSPHORYLASE, FAD SYNTHASE; COMPND 6 EC: 2.7.1.26, 2.7.7.2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM AMMONIAGENES; SOURCE 3 ORGANISM_TAXID: 1697; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28 KEYWDS TRANSFERASE, FLAVIN MONONUCLEOTIDE EXPDTA X-RAY DIFFRACTION AUTHOR B.HERGUEDAS,M.MARTINEZ-JULVEZ,A.SERRANO,M.MEDINA REVDAT 3 16-JAN-13 3ZUG 1 JRNL REVDAT 2 22-AUG-12 3ZUG 1 JRNL REVDAT 1 01-AUG-12 3ZUG 0 JRNL AUTH A.SERRANO,S.FRAGO,B.HERGUEDAS,M.MARTINEZ-JULVEZ, JRNL AUTH 2 A.VELAZQUEZ-CAMPOY,M.MEDINA JRNL TITL KEY RESIDUES AT THE RIBOFLAVIN KINASE CATALYTIC SITE OF THE JRNL TITL 2 BIFUNCTIONAL RIBOFLAVIN KINASE/FMN ADENYLYLTRANSFERASE FROM JRNL TITL 3 CORYNEBACTERIUM AMMONIAGENES. JRNL REF CELL BIOCHEM.BIOPHYS. V. 65 57 2013 JRNL REFN ISSN 1085-9195 JRNL PMID 22892871 JRNL DOI 10.1007/S12013-012-9403-9 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.96 REMARK 3 NUMBER OF REFLECTIONS : 46262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.19701 REMARK 3 R VALUE (WORKING SET) : 0.19453 REMARK 3 FREE R VALUE : 0.22925 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.2 REMARK 3 FREE R VALUE TEST SET COUNT : 3603 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.050 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.103 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3398 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.204 REMARK 3 BIN FREE R VALUE SET COUNT : 261 REMARK 3 BIN FREE R VALUE : 0.251 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5191 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 337 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.574 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.196 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.509 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5317 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3482 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7239 ; 1.083 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8476 ; 0.807 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 673 ; 5.657 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 247 ;34.694 ;23.887 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 837 ;12.695 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;13.572 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 828 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5996 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1095 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3344 ; 0.650 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1367 ; 0.115 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5392 ; 1.224 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1973 ; 1.640 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1844 ; 2.670 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 186 REMARK 3 ORIGIN FOR THE GROUP (A): 23.5930 19.8250 -70.5240 REMARK 3 T TENSOR REMARK 3 T11: 0.0489 T22: 0.0705 REMARK 3 T33: 0.0328 T12: 0.0169 REMARK 3 T13: 0.0068 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 1.4755 L22: 1.0888 REMARK 3 L33: 0.8584 L12: -0.8834 REMARK 3 L13: -0.7730 L23: 0.5560 REMARK 3 S TENSOR REMARK 3 S11: 0.1272 S12: 0.1364 S13: 0.0318 REMARK 3 S21: -0.0857 S22: -0.0731 S23: -0.0911 REMARK 3 S31: 0.0385 S32: -0.0909 S33: -0.0541 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 186 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2780 6.3720 -19.4320 REMARK 3 T TENSOR REMARK 3 T11: 0.0741 T22: 0.0816 REMARK 3 T33: 0.0503 T12: 0.0138 REMARK 3 T13: 0.0033 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 2.5709 L22: 1.0991 REMARK 3 L33: 1.0257 L12: -1.0903 REMARK 3 L13: 0.4328 L23: -0.5393 REMARK 3 S TENSOR REMARK 3 S11: -0.2158 S12: -0.3727 S13: -0.0887 REMARK 3 S21: 0.1807 S22: 0.1875 S23: 0.0819 REMARK 3 S31: 0.0021 S32: -0.1529 S33: 0.0283 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 187 A 338 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0960 23.9180 -45.5070 REMARK 3 T TENSOR REMARK 3 T11: 0.0145 T22: 0.0855 REMARK 3 T33: 0.0610 T12: -0.0174 REMARK 3 T13: -0.0123 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.3154 L22: 0.8846 REMARK 3 L33: 0.7768 L12: 0.0504 REMARK 3 L13: -0.2371 L23: -0.2664 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: -0.0263 S13: -0.0149 REMARK 3 S21: 0.0348 S22: -0.0151 S23: 0.0015 REMARK 3 S31: -0.0192 S32: 0.0558 S33: 0.0042 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 187 B 338 REMARK 3 ORIGIN FOR THE GROUP (A): 33.2080 4.9280 -42.6200 REMARK 3 T TENSOR REMARK 3 T11: 0.0844 T22: 0.0717 REMARK 3 T33: 0.1152 T12: 0.0646 REMARK 3 T13: 0.0656 T23: 0.0847 REMARK 3 L TENSOR REMARK 3 L11: 2.7107 L22: 0.0482 REMARK 3 L33: 2.0510 L12: 0.2283 REMARK 3 L13: -0.0473 L23: 0.0999 REMARK 3 S TENSOR REMARK 3 S11: 0.0283 S12: 0.0579 S13: -0.0510 REMARK 3 S21: -0.0391 S22: -0.0496 S23: -0.0507 REMARK 3 S31: -0.0581 S32: 0.0634 S33: 0.0213 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 259-261 (CHAIN A), 144-146 (CHAIN B), 199- REMARK 3 200 ( CHAIN B) AND 260-262 (CHAIN B) PRESENTED POOR DENSITY AND REMARK 3 WERE NOT INCLUDED IN THE PDB. RESIDUES 66 (CHAIN A), 195 ( CHAIN REMARK 3 A AND CHAIN B), 325-331 (CHAIN A) PRESENT TWO ALTERNATIVE REMARK 3 CONFORMATION. REMARK 4 REMARK 4 3ZUG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUL-11. REMARK 100 THE PDBE ID CODE IS EBI-49038. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD (QUANTUM 315R) REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49927 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.05 REMARK 200 RESOLUTION RANGE LOW (A) : 47.19 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 21.7 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 34.40 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.1 REMARK 200 R MERGE FOR SHELL (I) : 0.51 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2X0K REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.7 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M LI2SO4, 0.1 M HEPES PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 66.77250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.77250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.77250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.77250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 66.77250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.77250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 66.77250 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 66.77250 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 66.77250 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 66.77250 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 66.77250 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 66.77250 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 66.77250 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 66.77250 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 66.77250 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 66.77250 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 66.77250 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 66.77250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 83360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -239.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 66.77250 REMARK 350 BIOMT2 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 2 1.000000 0.000000 0.000000 -66.77250 REMARK 350 BIOMT1 3 0.000000 0.000000 1.000000 66.77250 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 66.77250 REMARK 350 BIOMT3 3 0.000000 -1.000000 0.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 268 TO ASP REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLU 268 TO ASP REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 259 REMARK 465 PHE A 260 REMARK 465 GLY A 261 REMARK 465 GLN B 144 REMARK 465 SER B 145 REMARK 465 ARG B 146 REMARK 465 ARG B 199 REMARK 465 GLY B 200 REMARK 465 PHE B 260 REMARK 465 GLY B 261 REMARK 465 ASP B 262 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 27 58.24 40.00 REMARK 500 ARG A 65 17.11 58.81 REMARK 500 SER A 145 -59.97 69.71 REMARK 500 TYR A 279 128.18 -39.70 REMARK 500 HIS A 325 -30.60 78.98 REMARK 500 ALA A 328 153.73 -42.82 REMARK 500 LEU B 14 106.43 -59.93 REMARK 500 ALA B 197 48.59 -140.68 REMARK 500 ASN B 241 49.78 -99.05 REMARK 500 HIS B 325 8.76 -63.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 324 HIS A 325 136.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1339 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X0K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MODULAR FAD SYNTHETASE FROM REMARK 900 CORYNEBACTERIUM AMMONIAGENES DBREF 3ZUG A 1 338 UNP Q59263 RIBF_CORAM 1 338 DBREF 3ZUG B 1 338 UNP Q59263 RIBF_CORAM 1 338 SEQADV 3ZUG ASP A 268 UNP Q59263 GLU 268 ENGINEERED MUTATION SEQADV 3ZUG ASP B 268 UNP Q59263 GLU 268 ENGINEERED MUTATION SEQRES 1 A 338 MET ASP ILE TRP TYR GLY THR ALA ALA VAL PRO LYS ASP SEQRES 2 A 338 LEU ASP ASN SER ALA VAL THR ILE GLY VAL PHE ASP GLY SEQRES 3 A 338 VAL HIS ARG GLY HIS GLN LYS LEU ILE ASN ALA THR VAL SEQRES 4 A 338 GLU LYS ALA ARG GLU VAL GLY ALA LYS ALA ILE MET VAL SEQRES 5 A 338 THR PHE ASP PRO HIS PRO VAL SER VAL PHE LEU PRO ARG SEQRES 6 A 338 ARG ALA PRO LEU GLY ILE THR THR LEU ALA GLU ARG PHE SEQRES 7 A 338 ALA LEU ALA GLU SER PHE GLY ILE ASP GLY VAL LEU VAL SEQRES 8 A 338 ILE ASP PHE THR ARG GLU LEU SER GLY THR SER PRO GLU SEQRES 9 A 338 LYS TYR VAL GLU PHE LEU LEU GLU ASP THR LEU HIS ALA SEQRES 10 A 338 SER HIS VAL VAL VAL GLY ALA ASN PHE THR PHE GLY GLU SEQRES 11 A 338 ASN ALA ALA GLY THR ALA ASP SER LEU ARG GLN ILE CYS SEQRES 12 A 338 GLN SER ARG LEU THR VAL ASP VAL ILE ASP LEU LEU ASP SEQRES 13 A 338 ASP GLU GLY VAL ARG ILE SER SER THR THR VAL ARG GLU SEQRES 14 A 338 PHE LEU SER GLU GLY ASP VAL ALA ARG ALA ASN TRP ALA SEQRES 15 A 338 LEU GLY ARG HIS PHE TYR VAL THR GLY PRO VAL VAL ARG SEQRES 16 A 338 GLY ALA GLY ARG GLY GLY LYS GLU LEU GLY PHE PRO THR SEQRES 17 A 338 ALA ASN GLN TYR PHE HIS ASP THR VAL ALA LEU PRO ALA SEQRES 18 A 338 ASP GLY VAL TYR ALA GLY TRP LEU THR ILE LEU PRO THR SEQRES 19 A 338 GLU ALA PRO VAL SER GLY ASN MET GLU PRO GLU VAL ALA SEQRES 20 A 338 TYR ALA ALA ALA ILE SER VAL GLY THR ASN PRO THR PHE SEQRES 21 A 338 GLY ASP GLU GLN ARG SER VAL ASP SER PHE VAL LEU ASP SEQRES 22 A 338 ARG ASP ALA ASP LEU TYR GLY HIS ASP VAL LYS VAL GLU SEQRES 23 A 338 PHE VAL ASP HIS VAL ARG ALA MET GLU LYS PHE ASP SER SEQRES 24 A 338 VAL GLU GLN LEU LEU GLU VAL MET ALA LYS ASP VAL GLN SEQRES 25 A 338 LYS THR ARG THR LEU LEU ALA GLN ASP VAL GLN ALA HIS SEQRES 26 A 338 LYS MET ALA PRO GLU THR TYR PHE LEU GLN ALA GLU SER SEQRES 1 B 338 MET ASP ILE TRP TYR GLY THR ALA ALA VAL PRO LYS ASP SEQRES 2 B 338 LEU ASP ASN SER ALA VAL THR ILE GLY VAL PHE ASP GLY SEQRES 3 B 338 VAL HIS ARG GLY HIS GLN LYS LEU ILE ASN ALA THR VAL SEQRES 4 B 338 GLU LYS ALA ARG GLU VAL GLY ALA LYS ALA ILE MET VAL SEQRES 5 B 338 THR PHE ASP PRO HIS PRO VAL SER VAL PHE LEU PRO ARG SEQRES 6 B 338 ARG ALA PRO LEU GLY ILE THR THR LEU ALA GLU ARG PHE SEQRES 7 B 338 ALA LEU ALA GLU SER PHE GLY ILE ASP GLY VAL LEU VAL SEQRES 8 B 338 ILE ASP PHE THR ARG GLU LEU SER GLY THR SER PRO GLU SEQRES 9 B 338 LYS TYR VAL GLU PHE LEU LEU GLU ASP THR LEU HIS ALA SEQRES 10 B 338 SER HIS VAL VAL VAL GLY ALA ASN PHE THR PHE GLY GLU SEQRES 11 B 338 ASN ALA ALA GLY THR ALA ASP SER LEU ARG GLN ILE CYS SEQRES 12 B 338 GLN SER ARG LEU THR VAL ASP VAL ILE ASP LEU LEU ASP SEQRES 13 B 338 ASP GLU GLY VAL ARG ILE SER SER THR THR VAL ARG GLU SEQRES 14 B 338 PHE LEU SER GLU GLY ASP VAL ALA ARG ALA ASN TRP ALA SEQRES 15 B 338 LEU GLY ARG HIS PHE TYR VAL THR GLY PRO VAL VAL ARG SEQRES 16 B 338 GLY ALA GLY ARG GLY GLY LYS GLU LEU GLY PHE PRO THR SEQRES 17 B 338 ALA ASN GLN TYR PHE HIS ASP THR VAL ALA LEU PRO ALA SEQRES 18 B 338 ASP GLY VAL TYR ALA GLY TRP LEU THR ILE LEU PRO THR SEQRES 19 B 338 GLU ALA PRO VAL SER GLY ASN MET GLU PRO GLU VAL ALA SEQRES 20 B 338 TYR ALA ALA ALA ILE SER VAL GLY THR ASN PRO THR PHE SEQRES 21 B 338 GLY ASP GLU GLN ARG SER VAL ASP SER PHE VAL LEU ASP SEQRES 22 B 338 ARG ASP ALA ASP LEU TYR GLY HIS ASP VAL LYS VAL GLU SEQRES 23 B 338 PHE VAL ASP HIS VAL ARG ALA MET GLU LYS PHE ASP SER SEQRES 24 B 338 VAL GLU GLN LEU LEU GLU VAL MET ALA LYS ASP VAL GLN SEQRES 25 B 338 LYS THR ARG THR LEU LEU ALA GLN ASP VAL GLN ALA HIS SEQRES 26 B 338 LYS MET ALA PRO GLU THR TYR PHE LEU GLN ALA GLU SER HET SO4 A1339 5 HET SO4 A1340 5 HET SO4 A1341 5 HET SO4 B1339 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 4 HOH *337(H2 O) HELIX 1 1 THR A 7 VAL A 10 5 4 HELIX 2 2 HIS A 28 GLY A 46 1 19 HELIX 3 3 HIS A 57 LEU A 63 1 7 HELIX 4 4 THR A 73 PHE A 84 1 12 HELIX 5 5 SER A 102 LEU A 111 1 10 HELIX 6 6 GLY A 129 ALA A 133 5 5 HELIX 7 7 ALA A 136 CYS A 143 1 8 HELIX 8 8 SER A 163 GLU A 173 1 11 HELIX 9 9 ASP A 175 GLY A 184 1 10 HELIX 10 10 SER A 299 HIS A 325 1 27 HELIX 11 11 THR B 7 VAL B 10 5 4 HELIX 12 12 HIS B 28 GLY B 46 1 19 HELIX 13 13 HIS B 57 LEU B 63 1 7 HELIX 14 14 THR B 73 PHE B 84 1 12 HELIX 15 15 SER B 102 LEU B 111 1 10 HELIX 16 16 GLY B 129 ALA B 133 5 5 HELIX 17 17 ALA B 136 ILE B 142 1 7 HELIX 18 18 SER B 163 GLU B 173 1 11 HELIX 19 19 ASP B 175 GLY B 184 1 10 HELIX 20 20 SER B 299 ALA B 324 1 26 SHEET 1 AA 6 ASP A 2 TYR A 5 0 SHEET 2 AA 6 GLY A 88 ILE A 92 1 O VAL A 89 N TRP A 4 SHEET 3 AA 6 LYS A 48 PHE A 54 1 O MET A 51 N LEU A 90 SHEET 4 AA 6 SER A 17 ILE A 21 1 O ALA A 18 N ILE A 50 SHEET 5 AA 6 ALA A 117 GLY A 123 1 N SER A 118 O SER A 17 SHEET 6 AA 6 THR A 148 ILE A 152 1 O THR A 148 N VAL A 120 SHEET 1 AB 2 THR A 127 PHE A 128 0 SHEET 2 AB 2 GLY A 134 THR A 135 -1 O GLY A 134 N PHE A 128 SHEET 1 AC 2 ASP A 156 ASP A 157 0 SHEET 2 AC 2 VAL A 160 ARG A 161 -1 O VAL A 160 N ASP A 157 SHEET 1 AD 6 TYR A 188 PRO A 192 0 SHEET 2 AD 6 ASP A 282 ARG A 292 -1 O VAL A 283 N GLY A 191 SHEET 3 AD 6 GLY A 223 ILE A 231 -1 O VAL A 224 N VAL A 291 SHEET 4 AD 6 ALA A 247 THR A 256 -1 O TYR A 248 N LEU A 229 SHEET 5 AD 6 ARG A 265 VAL A 271 -1 O SER A 266 N GLY A 255 SHEET 6 AD 6 ALA A 209 PHE A 213 -1 O ALA A 209 N SER A 269 SHEET 1 AE 5 TYR A 188 PRO A 192 0 SHEET 2 AE 5 ASP A 282 ARG A 292 -1 O VAL A 283 N GLY A 191 SHEET 3 AE 5 GLY A 223 ILE A 231 -1 O VAL A 224 N VAL A 291 SHEET 4 AE 5 ALA A 247 THR A 256 -1 O TYR A 248 N LEU A 229 SHEET 5 AE 5 TYR A 332 PHE A 333 -1 O PHE A 333 N ALA A 249 SHEET 1 AF 2 SER A 239 GLY A 240 0 SHEET 2 AF 2 ALA A 276 ASP A 277 -1 O ASP A 277 N SER A 239 SHEET 1 BA 6 ASP B 2 TYR B 5 0 SHEET 2 BA 6 GLY B 88 ILE B 92 1 O VAL B 89 N TRP B 4 SHEET 3 BA 6 LYS B 48 PHE B 54 1 O MET B 51 N LEU B 90 SHEET 4 BA 6 SER B 17 ILE B 21 1 O ALA B 18 N ILE B 50 SHEET 5 BA 6 ALA B 117 GLY B 123 1 N SER B 118 O SER B 17 SHEET 6 BA 6 THR B 148 ILE B 152 1 O THR B 148 N VAL B 120 SHEET 1 BB 2 THR B 127 PHE B 128 0 SHEET 2 BB 2 GLY B 134 THR B 135 -1 O GLY B 134 N PHE B 128 SHEET 1 BC 2 ASP B 156 ASP B 157 0 SHEET 2 BC 2 VAL B 160 ARG B 161 -1 O VAL B 160 N ASP B 157 SHEET 1 BD 6 TYR B 188 PRO B 192 0 SHEET 2 BD 6 ASP B 282 ARG B 292 -1 O VAL B 283 N GLY B 191 SHEET 3 BD 6 GLY B 223 ILE B 231 -1 O VAL B 224 N VAL B 291 SHEET 4 BD 6 ALA B 247 THR B 256 -1 O TYR B 248 N LEU B 229 SHEET 5 BD 6 ARG B 265 VAL B 271 -1 O SER B 266 N GLY B 255 SHEET 6 BD 6 ALA B 209 PHE B 213 -1 O ALA B 209 N SER B 269 SHEET 1 BE 5 TYR B 188 PRO B 192 0 SHEET 2 BE 5 ASP B 282 ARG B 292 -1 O VAL B 283 N GLY B 191 SHEET 3 BE 5 GLY B 223 ILE B 231 -1 O VAL B 224 N VAL B 291 SHEET 4 BE 5 ALA B 247 THR B 256 -1 O TYR B 248 N LEU B 229 SHEET 5 BE 5 TYR B 332 PHE B 333 -1 O PHE B 333 N ALA B 249 SHEET 1 BF 2 SER B 239 GLY B 240 0 SHEET 2 BF 2 ALA B 276 ASP B 277 -1 O ASP B 277 N SER B 239 CISPEP 1 ASP A 55 PRO A 56 0 -0.54 CISPEP 2 ASP B 55 PRO B 56 0 -1.64 SITE 1 AC1 8 HIS A 28 HIS A 31 ASN A 125 SER A 163 SITE 2 AC1 8 SER A 164 HOH A2017 HOH A2071 HOH A2089 SITE 1 AC2 4 THR A 73 LEU A 74 ARG B 195 TYR B 279 SITE 1 AC3 7 ARG A 195 TYR A 279 HOH A2215 HOH A2216 SITE 2 AC3 7 HOH A2217 THR B 73 LEU B 74 SITE 1 AC4 9 HIS B 28 HIS B 31 ASN B 125 SER B 163 SITE 2 AC4 9 SER B 164 HOH B2012 HOH B2059 HOH B2060 SITE 3 AC4 9 HOH B2120 CRYST1 133.545 133.545 133.545 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007488 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007488 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007488 0.00000