PDB Short entry for 3ZYW HEADER METAL BINDING PROTEIN 29-AUG-11 3ZYW TITLE CRYSTAL STRUCTURE OF THE FIRST GLUTAREDOXIN DOMAIN OF HUMAN TITLE 2 GLUTAREDOXIN 3 (GLRX3) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAREDOXIN-3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: GLUTAREDOXIN DOMAIN, RESIDUES 130-232; COMPND 5 SYNONYM: PKC-INTERACTING COUSIN OF THIOREDOXIN, PICOT, PKC-THETA- COMPND 6 INTERACTING PROTEIN, PKCQ-INTERACTING PROTEIN, THIOREDOXIN-LIKE COMPND 7 PROTEIN 2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC-CTHF KEYWDS METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.VOLLMAR,C.JOHANSSON,R.COCKING,T.KROJER,J.R.C.MUNIZ,K.L.KAVANAGH, AUTHOR 2 F.VON DELFT,C.BOUNTRA,C.H.ARROWSMITH,J.WEIGELT,A.EDWARDS,U.OPPERMANN REVDAT 3 20-DEC-23 3ZYW 1 REMARK REVDAT 2 24-JAN-18 3ZYW 1 AUTHOR JRNL REVDAT 1 29-FEB-12 3ZYW 0 JRNL AUTH M.VOLLMAR,C.JOHANSSON,R.COCKING,T.KROJER,J.R.C.MUNIZ, JRNL AUTH 2 K.L.KAVANAGH,F.VON DELFT,C.BOUNTRA,C.H.ARROWSMITH,J.WEIGELT, JRNL AUTH 3 A.EDWARDS,U.OPPERMANN JRNL TITL CRYSTAL STRUCTURE OF THE FIRST GLUTAREDOXIN DOMAIN OF HUMAN JRNL TITL 2 GLUTAREDOXIN 3 (GLRX3) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 22530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1215 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1205 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1757 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.71000 REMARK 3 B22 (A**2) : 2.62000 REMARK 3 B33 (A**2) : -0.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.773 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1872 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1321 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2529 ; 1.382 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3253 ; 0.872 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 237 ; 5.587 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;35.797 ;25.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 350 ;12.512 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;10.930 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 271 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2059 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 353 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 3ZYW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1290049477. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23870 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 19.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2YAN REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 5.5, 25% PEG3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.52600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.35250 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.52600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.35250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 LYS A 130 REMARK 465 GLU A 131 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 224 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2140 O HOH B 2162 1.96 REMARK 500 O HOH B 2091 O HOH B 2131 2.14 REMARK 500 OE1 GLN B 155 O HOH B 2042 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2028 O HOH A 2152 1655 2.00 REMARK 500 O HOH A 2186 O HOH B 2187 4545 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 184 103.59 -161.19 REMARK 500 CYS B 159 146.90 -171.41 REMARK 500 ASP B 184 101.43 -160.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2120 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH A2150 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B2148 DISTANCE = 7.33 ANGSTROMS REMARK 525 HOH B2149 DISTANCE = 8.05 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1242 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YAN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SECOND GLUTAREDOXIN DOMAIN OF HUMAN TXNL2 REMARK 900 RELATED ID: 2WZ9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE THIOREDOXIN DOMAIN OF HUMAN TXNL2 REMARK 999 REMARK 999 SEQUENCE REMARK 999 STARTING MET0 IN CHAIN B AS WELL AS TERMINAL RESIDUES REMARK 999 ALA233 GLU234 ASN235 LEU236 TYR237 PHE238 GLN239 ARE DUE REMARK 999 TO CONSTRUCT DESIGN DBREF 3ZYW A 130 232 UNP O76003 GLRX3_HUMAN 130 232 DBREF 3ZYW B 130 232 UNP O76003 GLRX3_HUMAN 130 232 SEQADV 3ZYW MET A 0 UNP O76003 EXPRESSION TAG SEQADV 3ZYW ALA A 233 UNP O76003 EXPRESSION TAG SEQADV 3ZYW GLU A 234 UNP O76003 EXPRESSION TAG SEQADV 3ZYW ASN A 235 UNP O76003 EXPRESSION TAG SEQADV 3ZYW LEU A 236 UNP O76003 EXPRESSION TAG SEQADV 3ZYW TYR A 237 UNP O76003 EXPRESSION TAG SEQADV 3ZYW PHE A 238 UNP O76003 EXPRESSION TAG SEQADV 3ZYW GLN A 239 UNP O76003 EXPRESSION TAG SEQADV 3ZYW MET B 0 UNP O76003 EXPRESSION TAG SEQADV 3ZYW ALA B 233 UNP O76003 EXPRESSION TAG SEQADV 3ZYW GLU B 234 UNP O76003 EXPRESSION TAG SEQADV 3ZYW ASN B 235 UNP O76003 EXPRESSION TAG SEQADV 3ZYW LEU B 236 UNP O76003 EXPRESSION TAG SEQADV 3ZYW TYR B 237 UNP O76003 EXPRESSION TAG SEQADV 3ZYW PHE B 238 UNP O76003 EXPRESSION TAG SEQADV 3ZYW GLN B 239 UNP O76003 EXPRESSION TAG SEQRES 1 A 111 MET LYS GLU ASP LEU ASN LEU ARG LEU LYS LYS LEU THR SEQRES 2 A 111 HIS ALA ALA PRO CYS MET LEU PHE MET LYS GLY THR PRO SEQRES 3 A 111 GLN GLU PRO ARG CYS GLY PHE SER LYS GLN MET VAL GLU SEQRES 4 A 111 ILE LEU HIS LYS HIS ASN ILE GLN PHE SER SER PHE ASP SEQRES 5 A 111 ILE PHE SER ASP GLU GLU VAL ARG GLN GLY LEU LYS ALA SEQRES 6 A 111 TYR SER SER TRP PRO THR TYR PRO GLN LEU TYR VAL SER SEQRES 7 A 111 GLY GLU LEU ILE GLY GLY LEU ASP ILE ILE LYS GLU LEU SEQRES 8 A 111 GLU ALA SER GLU GLU LEU ASP THR ILE CYS PRO LYS ALA SEQRES 9 A 111 ALA GLU ASN LEU TYR PHE GLN SEQRES 1 B 111 MET LYS GLU ASP LEU ASN LEU ARG LEU LYS LYS LEU THR SEQRES 2 B 111 HIS ALA ALA PRO CYS MET LEU PHE MET LYS GLY THR PRO SEQRES 3 B 111 GLN GLU PRO ARG CYS GLY PHE SER LYS GLN MET VAL GLU SEQRES 4 B 111 ILE LEU HIS LYS HIS ASN ILE GLN PHE SER SER PHE ASP SEQRES 5 B 111 ILE PHE SER ASP GLU GLU VAL ARG GLN GLY LEU LYS ALA SEQRES 6 B 111 TYR SER SER TRP PRO THR TYR PRO GLN LEU TYR VAL SER SEQRES 7 B 111 GLY GLU LEU ILE GLY GLY LEU ASP ILE ILE LYS GLU LEU SEQRES 8 B 111 GLU ALA SER GLU GLU LEU ASP THR ILE CYS PRO LYS ALA SEQRES 9 B 111 ALA GLU ASN LEU TYR PHE GLN HET EDO A1240 4 HET EDO A1241 4 HET EDO B1240 4 HET EDO B1241 4 HET EDO B1242 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 HOH *410(H2 O) HELIX 1 1 ASP A 132 HIS A 142 1 11 HELIX 2 2 CYS A 159 HIS A 172 1 14 HELIX 3 3 ASP A 184 SER A 196 1 13 HELIX 4 4 GLY A 212 SER A 222 1 11 HELIX 5 5 GLU A 224 CYS A 229 1 6 HELIX 6 6 ASP B 132 HIS B 142 1 11 HELIX 7 7 CYS B 159 HIS B 172 1 14 HELIX 8 8 ASP B 184 SER B 196 1 13 HELIX 9 9 GLY B 212 SER B 222 1 11 HELIX 10 10 GLU B 224 CYS B 229 1 6 SHEET 1 AA 4 SER A 177 ASP A 180 0 SHEET 2 AA 4 CYS A 146 MET A 150 1 O CYS A 146 N SER A 177 SHEET 3 AA 4 GLN A 202 VAL A 205 -1 O GLN A 202 N PHE A 149 SHEET 4 AA 4 GLU A 208 GLY A 211 -1 O GLU A 208 N VAL A 205 SHEET 1 BA 4 SER B 177 ASP B 180 0 SHEET 2 BA 4 CYS B 146 MET B 150 1 O CYS B 146 N SER B 177 SHEET 3 BA 4 GLN B 202 VAL B 205 -1 O GLN B 202 N PHE B 149 SHEET 4 BA 4 GLU B 208 GLY B 211 -1 O GLU B 208 N VAL B 205 CISPEP 1 TYR A 200 PRO A 201 0 3.69 CISPEP 2 TYR B 200 PRO B 201 0 2.77 SITE 1 AC1 7 GLU A 208 LEU A 209 ILE A 210 HOH A2151 SITE 2 AC1 7 LEU B 236 PHE B 238 GLN B 239 SITE 1 AC2 5 THR A 141 HIS A 142 TYR A 194 GLY A 207 SITE 2 AC2 5 HOH A2130 SITE 1 AC3 8 PRO B 154 HIS B 170 PHE B 176 EDO B1242 SITE 2 AC3 8 HOH B2069 HOH B2077 HOH B2085 HOH B2204 SITE 1 AC4 5 LYS B 139 LEU B 140 ALA B 143 HOH B2021 SITE 2 AC4 5 HOH B2089 SITE 1 AC5 5 GLN B 155 EDO B1240 HOH B2037 HOH B2042 SITE 2 AC5 5 HOH B2204 CRYST1 34.524 87.052 90.705 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028965 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011487 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011025 0.00000