PDB Short entry for 3ZZK HEADER TRANSFERASE 01-SEP-11 3ZZK TITLE STRUCTURE OF AN ENGINEERED ASPARTATE AMINOTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPAT, TRANSAMINASE A; COMPND 5 EC: 2.6.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: TY103; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TY103; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PKDHE19 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.J.FERNANDEZ,D.DEVRIES,E.PENA-SOLER,M.COLL,P.CHRISTEN,H.GEHRING, AUTHOR 2 M.C.VEGA REVDAT 1 28-DEC-11 3ZZK 0 JRNL AUTH F.J.FERNANDEZ,D.DE VRIES,E.PENA-SOLER,M.COLL,P.CHRISTEN, JRNL AUTH 2 H.GEHRING,M.C.VEGA JRNL TITL STRUCTURE AND MECHANISM OF A CYSTEINE SULFINATE DESULFINASE JRNL TITL 2 ENGINEERED ON THE ASPARTATE AMINOTRANSFERASE SCAFFOLD. JRNL REF BIOCIM.BIOPHYS.ACTA V.1824 339 2011 JRNL REFN ISSN 0006-3002 JRNL PMID 22138634 JRNL DOI 10.1016/J.BBAPAP.2011.10.016 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 96.50 REMARK 3 NUMBER OF REFLECTIONS : 45767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.17332 REMARK 3 R VALUE (WORKING SET) : 0.17195 REMARK 3 FREE R VALUE : 0.19868 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 2453 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.784 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.830 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2930 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.228 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.234 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3150 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 423 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.997 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01 REMARK 3 B22 (A**2) : -0.03 REMARK 3 B33 (A**2) : 0.04 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.787 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3281 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4461 ; 1.174 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 422 ; 6.094 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;33.584 ;24.416 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 539 ;14.243 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.174 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 494 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2518 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 3ZZK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-SEP-11. REMARK 100 THE PDBE ID CODE IS EBI-43607. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48343 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.78 REMARK 200 RESOLUTION RANGE LOW (A) : 44.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.7 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.30 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.0 REMARK 200 R MERGE FOR SHELL (I) : 0.14 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1AAW REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.9 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.59500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.59500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.56500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.17000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.56500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.17000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.59500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.56500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.17000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.59500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.56500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.17000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -143.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 85.13000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 39.59500 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ILE 33 TO GLN REMARK 400 ENGINEERED RESIDUE IN CHAIN A, TYR 214 TO GLN REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ARG 280 TO TYR REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 132 O HOH A 2202 2.11 REMARK 500 O HOH A 2367 O HOH A 2389 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 11 121.72 75.48 REMARK 500 TYR A 149 -58.64 -145.77 REMARK 500 ALA A 218 -71.67 -91.65 REMARK 500 ARG A 254 68.20 64.36 REMARK 500 ASN A 282 -74.40 -112.34 REMARK 500 SER A 284 -58.74 78.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 358 23.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PMP A1397 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ARG RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE, PHOSPHO-5'-PYRIDOXYL ASPARTATE REMARK 900 COMPLEX REMARK 900 RELATED ID: 1AAM RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE MUTANT WITH ARG 292 REPLACED REMARK 900 BY ASP (R292D) COMPLEX WITH PYRIDOXAL-5'-PHOSPHATE AND REMARK 900 SULFATE REMARK 900 RELATED ID: 1TOE RELATED DB: PDB REMARK 900 UNLIGANDED STRUCTURE OF HEXAMUTANT + A293D MUTANT OF E. REMARK 900 COLI ASPARTATE AMINOTRANSFERASE REMARK 900 RELATED ID: 1IX7 RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE ACTIVE SITE MUTANT V39F REMARK 900 MALEATECOMPLEX REMARK 900 RELATED ID: 1CQ6 RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE COMPLEX WITH C4-PYRIDOXAL-5P- REMARK 900 PHOSPHATE REMARK 900 RELATED ID: 1ASN RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE (WILD TYPE, PYRIDOXAL-5'- REMARK 900 PHOSPHATE FORM) COMPLEX WITH SULFATE REMARK 900 RELATED ID: 1G7X RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE ACTIVE SITE MUTANTN194A/R292L/ REMARK 900 R386L REMARK 900 RELATED ID: 1AHX RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE HEXAMUTANT REMARK 900 RELATED ID: 1ASG RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE MUTANT WITH TYR 226 REPLACED REMARK 900 BY PHE (Y226F) AND COMPLEXED WITH PYRIDOXAL-5'- REMARK 900 PHOSPHATE AND MALEATE REMARK 900 RELATED ID: 1AHY RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE HEXAMUTANT REMARK 900 RELATED ID: 1QIS RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE FROM ESCHERICHIA COLI, REMARK 900 C191FMUTATION, WITH BOUND MALEATE REMARK 900 RELATED ID: 1G7W RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE ACTIVE SITE MUTANT N194A/R386L REMARK 900 RELATED ID: 1QIR RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE FROM ESCHERICHIA COLI, REMARK 900 C191YMUTATION, WITH BOUND MALEATE REMARK 900 RELATED ID: 1AHE RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE HEXAMUTANT REMARK 900 RELATED ID: 1ASE RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE WILD TYPE COMPLEXED WITH REMARK 900 PYRIDOXAL-5'-PHOSPHATE-N-OXIDE AND MALEATE REMARK 900 RELATED ID: 1AMS RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE COMPLEXED WITH PYRIDOXAMINE 5'- REMARK 900 PHOSPHATE AND GLUTARATE REMARK 900 RELATED ID: 2AAT RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE MUTANT K258A COMPLEX WITH REMARK 900 PYRIDOXAMINE PHOSPHATE (PMP) REMARK 900 RELATED ID: 1ARH RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE, Y225R/R386A MUTANT REMARK 900 RELATED ID: 1ARI RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE, W140H MUTANT, MALEATE COMPLEX REMARK 900 RELATED ID: 1IX8 RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE ACTIVE SITE MUTANT V39F/N194A REMARK 900 RELATED ID: 1BQD RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE P138A/P195A DOUBLE MUTANT REMARK 900 RELATED ID: 1ASB RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE MUTANT WITH ASP 223 REPLACED REMARK 900 BY ALA (D223A) AND COMPLEXED WITH PYRIDOXAL-5'- REMARK 900 PHOSPHATE AND MALEATE REMARK 900 RELATED ID: 1CQ8 RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE (E.C. 2.6.1.1) COMPLEXED REMARK 900 WITH C6-PYRIDOXAL- 5P- PHOSPHATE REMARK 900 RELATED ID: 1ASD RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE WILD TYPE COMPLEXED WITH N- REMARK 900 METHYL-PYRIDOXAL-5'-PHOSPHATE AND MALEATE REMARK 900 RELATED ID: 1ASA RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE WILD TYPE COMPLEXED WITH REMARK 900 PYRIDOXAL-5'-PHOSPHATE AND MALEATE REMARK 900 RELATED ID: 1AHF RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE HEXAMUTANT REMARK 900 RELATED ID: 1ART RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE COMPLEXED WITH PYRIDOXAL-5'- REMARK 900 PHOSPHATE AND 2-METHYLASPARTATE REMARK 900 RELATED ID: 1TOI RELATED DB: PDB REMARK 900 HYDROCINNAMIC ACID-BOUND STRUCTURE OF HEXAMUTANT + REMARK 900 A293DMUTANT OF E. COLI ASPARTATE AMINOTRANSFERASE REMARK 900 RELATED ID: 1AIB RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE MUTANT WITH LYS 258 REPLACED REMARK 900 BY HIS (K258H) COMPLEXED WITH PYRIDOXAMINE-5'- PHOSPHATE REMARK 900 AND 2-OXO-GLUTARATE REMARK 900 RELATED ID: 5EAA RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE FROM E. COLI, C191S MUTATION REMARK 900 RELATED ID: 1CZC RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE MUTANT ATB17/139S/142N WITH REMARK 900 GLUTARIC ACID REMARK 900 RELATED ID: 1IX6 RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE ACTIVE SITE MUTANT V39F REMARK 900 RELATED ID: 1ASM RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE (WILD TYPE, PYRIDOXAL-5'- REMARK 900 PHOSPHATE FORM) COMPLEX WITH MALEATE REMARK 900 RELATED ID: 1YOO RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE MUTANT ATB17 WITH ISOVALERIC REMARK 900 ACID REMARK 900 RELATED ID: 1ASF RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE MUTANT WITH TYR 226 REPLACED REMARK 900 BY PHE (Y226F) AND COMPLEXED WITH PYRIDOXAL-5'- REMARK 900 PHOSPHATE AND SULFATE REMARK 900 RELATED ID: 1G4X RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE ACTIVE SITE MUTANT N194A/R292L REMARK 900 RELATED ID: 1C9C RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE COMPLEXED WITH C3-PYRIDOXAL-5 REMARK 900 '-PHOSPHATE REMARK 900 RELATED ID: 1B4X RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE FROM E. COLI, C191S MUTATION, REMARK 900 WITH BOUND MALEATE REMARK 900 RELATED ID: 1BQA RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE P195A MUTANT REMARK 900 RELATED ID: 1SPA RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE MUTANT WITH ASP 222 REPLACED REMARK 900 BY ALA (D222A) RECONSTRUCTED WITH N(1)-METHYLATED REMARK 900 PYRIDOXAL-5'-PHOSPHATE REMARK 900 RELATED ID: 1AIC RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE MUTANT WITH LYS 258 REPLACED REMARK 900 BY HIS (K258H) COMPLEXED WITH PYRIDOXAMINE-5'- PHOSPHATE REMARK 900 AND SULFATE REMARK 900 RELATED ID: 1TOK RELATED DB: PDB REMARK 900 MALEIC ACID-BOUND STRUCTURE OF SRHEPT MUTANT OF E. REMARK 900 COLIASPARTATE AMINOTRANSFERASE REMARK 900 RELATED ID: 1TOJ RELATED DB: PDB REMARK 900 HYDROCINNAMIC ACID-BOUND STRUCTURE OF SRHEPT MUTANT OF REMARK 900 E.COLI ASPARTATE AMINOTRANSFERASE REMARK 900 RELATED ID: 1CQ7 RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE (E.C. 2.6.1.1) COMPLEXED REMARK 900 WITH C5-PYRIDOXAL- 5P- PHOSPHATE REMARK 900 RELATED ID: 1ARS RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE COMPLEXED WITH PYRIDOXAL-5'- REMARK 900 PHOSPHATE REMARK 900 RELATED ID: 1AAW RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE WILD TYPE COMPLEX WITH REMARK 900 PYRIDOXAL-5'-PHOSPHATE REMARK 900 RELATED ID: 1G4V RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE ACTIVE SITE MUTANT N194A/Y225F REMARK 900 RELATED ID: 1AIA RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE (HOLO FORM) MUTANT WITH LYS REMARK 900 258 REPLACED BY HIS (K258H) COMPLEXED WITH PYRIDOXAMINE REMARK 900 -5'-PHOSPHATE REMARK 900 RELATED ID: 1ASL RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE (WILD TYPE) COMPLEX WITH 2- REMARK 900 METHYLASPARTYL-PYRIDOXAL-5'-PHOSPHATE REMARK 900 RELATED ID: 1ASC RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE MUTANT WITH ASP 223 REPLACED REMARK 900 BY ALA (D223A) AND COMPLEXED WITH N-METHYL-PYRIDOXAL- REMARK 900 5'-PHOSPHATE REMARK 900 RELATED ID: 3AAT RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE (MUTANT WITH ARG 386 REPLACED REMARK 900 BY PHE) (R386F) COMPLEX WITH PYRIDOXAL-5'-PHOSPHATE REMARK 900 AND SULFATE REMARK 900 RELATED ID: 1TOG RELATED DB: PDB REMARK 900 HYDROCINNAMIC ACID-BOUND STRUCTURE OF SRHEPT + A293D REMARK 900 MUTANTOF E. COLI ASPARTATE AMINOTRANSFERASE REMARK 900 RELATED ID: 1AMR RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE COMPLEXED WITH PYRIDOXAMINE 5'- REMARK 900 PHOSPHATE AND MALEATE REMARK 900 RELATED ID: 1CZE RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE MUTANT ATB17/139S/142N WITH REMARK 900 SUCCINIC ACID REMARK 900 RELATED ID: 1QIT RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE FROM ESCHERICHIA COLI, REMARK 900 C191WMUTATION, WITH BOUND MALEATE REMARK 900 RELATED ID: 1AMQ RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE COMPLEXED WITH PYRIDOXAMINE 5'- REMARK 900 PHOSPHATE REMARK 900 RELATED ID: 1AHG RELATED DB: PDB REMARK 900 ASPARTATE AMINOTRANSFERASE HEXAMUTANT REMARK 900 RELATED ID: 3ZZJ RELATED DB: PDB REMARK 900 STRUCTURE OF AN ENGINEERED ASPARTATE AMINOTRANSFERASE REMARK 900 RELATED ID: 4A00 RELATED DB: PDB REMARK 900 STRUCTURE OF AN ENGINEERED ASPARTATE AMINOTRANSFERASE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE DEPOSITED SEQUENCE CONTAINS THREE MUTATIONS WITH REMARK 999 RESPECT TO THE WILD-TYPE SEQUENCE RECORDED ON UNIPROT ( REMARK 999 I33Q, Y214Q AND R280Y). DBREF 3ZZK A 1 396 UNP P00509 AAT_ECOLI 1 396 SEQADV 3ZZK GLN A 33 UNP P00509 ILE 33 ENGINEERED MUTATION SEQADV 3ZZK GLN A 214 UNP P00509 TYR 214 ENGINEERED MUTATION SEQADV 3ZZK TYR A 280 UNP P00509 ARG 280 ENGINEERED MUTATION SEQRES 1 A 396 MET PHE GLU ASN ILE THR ALA ALA PRO ALA ASP PRO ILE SEQRES 2 A 396 LEU GLY LEU ALA ASP LEU PHE ARG ALA ASP GLU ARG PRO SEQRES 3 A 396 GLY LYS ILE ASN LEU GLY GLN GLY VAL TYR LYS ASP GLU SEQRES 4 A 396 THR GLY LYS THR PRO VAL LEU THR SER VAL LYS LYS ALA SEQRES 5 A 396 GLU GLN TYR LEU LEU GLU ASN GLU THR THR LYS ASN TYR SEQRES 6 A 396 LEU GLY ILE ASP GLY ILE PRO GLU PHE GLY ARG CYS THR SEQRES 7 A 396 GLN GLU LEU LEU PHE GLY LYS GLY SER ALA LEU ILE ASN SEQRES 8 A 396 ASP LYS ARG ALA ARG THR ALA GLN THR PRO GLY GLY THR SEQRES 9 A 396 GLY ALA LEU ARG VAL ALA ALA ASP PHE LEU ALA LYS ASN SEQRES 10 A 396 THR SER VAL LYS ARG VAL TRP VAL SER ASN PRO SER TRP SEQRES 11 A 396 PRO ASN HIS LYS SER VAL PHE ASN SER ALA GLY LEU GLU SEQRES 12 A 396 VAL ARG GLU TYR ALA TYR TYR ASP ALA GLU ASN HIS THR SEQRES 13 A 396 LEU ASP PHE ASP ALA LEU ILE ASN SER LEU ASN GLU ALA SEQRES 14 A 396 GLN ALA GLY ASP VAL VAL LEU PHE HIS GLY CYS CYS HIS SEQRES 15 A 396 ASN PRO THR GLY ILE ASP PRO THR LEU GLU GLN TRP GLN SEQRES 16 A 396 THR LEU ALA GLN LEU SER VAL GLU LYS GLY TRP LEU PRO SEQRES 17 A 396 LEU PHE ASP PHE ALA GLN GLN GLY PHE ALA ARG GLY LEU SEQRES 18 A 396 GLU GLU ASP ALA GLU GLY LEU ARG ALA PHE ALA ALA MET SEQRES 19 A 396 HIS LYS GLU LEU ILE VAL ALA SER SER TYR SER LYS ASN SEQRES 20 A 396 PHE GLY LEU TYR ASN GLU ARG VAL GLY ALA CYS THR LEU SEQRES 21 A 396 VAL ALA ALA ASP SER GLU THR VAL ASP ARG ALA PHE SER SEQRES 22 A 396 GLN MET LYS ALA ALA ILE TYR ALA ASN TYR SER ASN PRO SEQRES 23 A 396 PRO ALA HIS GLY ALA SER VAL VAL ALA THR ILE LEU SER SEQRES 24 A 396 ASN ASP ALA LEU ARG ALA ILE TRP GLU GLN GLU LEU THR SEQRES 25 A 396 ASP MET ARG GLN ARG ILE GLN ARG MET ARG GLN LEU PHE SEQRES 26 A 396 VAL ASN THR LEU GLN GLU LYS GLY ALA ASN ARG ASP PHE SEQRES 27 A 396 SER PHE ILE ILE LYS GLN ASN GLY MET PHE SER PHE SER SEQRES 28 A 396 GLY LEU THR LYS GLU GLN VAL LEU ARG LEU ARG GLU GLU SEQRES 29 A 396 PHE GLY VAL TYR ALA VAL ALA SER GLY ARG VAL ASN VAL SEQRES 30 A 396 ALA GLY MET THR PRO ASP ASN MET ALA PRO LEU CYS GLU SEQRES 31 A 396 ALA ILE VAL ALA VAL LEU HET PMP A1397 16 HET SO4 A1398 5 HET SO4 A1399 5 HET SO4 A1400 5 HET SO4 A1401 5 HET GOL A1402 6 HET GOL A1403 6 HET GOL A1404 6 HET GOL A1405 6 HET GOL A1406 6 HETNAM PMP 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN PMP PYRIDOXAMINE-5'-PHOSPHATE FORMUL 2 SO4 4(O4 S 2-) FORMUL 3 GOL 5(C3 H8 O3) FORMUL 4 PMP C8 H13 N2 O5 P FORMUL 5 HOH *423(H2 O) HELIX 1 1 ASP A 11 ASP A 23 1 13 HELIX 2 2 LEU A 46 GLU A 60 1 15 HELIX 3 3 ILE A 71 GLY A 84 1 14 HELIX 4 4 SER A 87 ASP A 92 1 6 HELIX 5 5 GLY A 102 THR A 118 1 17 HELIX 6 6 PRO A 131 ALA A 140 1 10 HELIX 7 7 ASP A 158 ASN A 167 1 10 HELIX 8 8 THR A 190 GLY A 205 1 16 HELIX 9 9 GLY A 220 ALA A 225 1 6 HELIX 10 10 ALA A 225 HIS A 235 1 11 HELIX 11 11 LEU A 250 GLU A 253 5 4 HELIX 12 12 ASP A 264 ALA A 281 1 18 HELIX 13 13 PRO A 287 SER A 299 1 13 HELIX 14 14 ASN A 300 LYS A 332 1 33 HELIX 15 15 SER A 339 GLN A 344 1 6 HELIX 16 16 THR A 354 GLY A 366 1 13 HELIX 17 17 ALA A 378 MET A 380 5 3 HELIX 18 18 ASN A 384 LEU A 396 1 13 SHEET 1 AA 2 ILE A 29 ASN A 30 0 SHEET 2 AA 2 VAL A 367 TYR A 368 1 N TYR A 368 O ILE A 29 SHEET 1 AB 7 ALA A 95 PRO A 101 0 SHEET 2 AB 7 VAL A 255 VAL A 261 -1 O GLY A 256 N THR A 100 SHEET 3 AB 7 LEU A 238 SER A 243 -1 O LEU A 238 N VAL A 261 SHEET 4 AB 7 LEU A 207 PHE A 212 1 O PRO A 208 N ILE A 239 SHEET 5 AB 7 VAL A 174 HIS A 178 1 O VAL A 175 N LEU A 209 SHEET 6 AB 7 ARG A 122 ASN A 127 1 O ARG A 122 N VAL A 174 SHEET 7 AB 7 GLU A 143 ALA A 148 1 O GLU A 143 N VAL A 123 SHEET 1 AC 2 PHE A 348 PHE A 350 0 SHEET 2 AC 2 ARG A 374 ASN A 376 -1 O VAL A 375 N SER A 349 CISPEP 1 ASN A 127 PRO A 128 0 1.51 CISPEP 2 ASN A 183 PRO A 184 0 17.95 SITE 1 AC1 16 TYR A 65 GLY A 102 GLY A 103 THR A 104 SITE 2 AC1 16 TRP A 130 HIS A 178 ASN A 183 ASP A 211 SITE 3 AC1 16 ALA A 213 SER A 243 SER A 245 LYS A 246 SITE 4 AC1 16 ARG A 254 SO4 A1400 HOH A2044 HOH A2286 SITE 1 AC2 5 ARG A 315 GLN A 316 GLN A 319 HOH A2289 SITE 2 AC2 5 HOH A2418 SITE 1 AC3 5 ARG A 122 GLN A 170 ARG A 360 ALA A 394 SITE 2 AC3 5 HOH A2189 SITE 1 AC4 7 ILE A 13 GLY A 34 TRP A 130 ASN A 183 SITE 2 AC4 7 ARG A 374 PMP A1397 HOH A2044 SITE 1 AC5 6 GLN A 33 ASN A 64 HOH A2034 HOH A2095 SITE 2 AC5 6 HOH A2096 HOH A2419 SITE 1 AC6 5 TYR A 55 ASN A 300 HOH A2337 HOH A2341 SITE 2 AC6 5 HOH A2421 SITE 1 AC7 8 SER A 129 TRP A 130 PRO A 131 ASN A 183 SITE 2 AC7 8 PRO A 184 VAL A 370 SER A 372 HOH A2422 SITE 1 AC8 5 LYS A 134 ASN A 138 GLU A 143 VAL A 144 SITE 2 AC8 5 GOL A1406 SITE 1 AC9 3 PRO A 72 ARG A 76 HOH A2117 SITE 1 BC1 3 ASN A 138 GLY A 141 GOL A1404 CRYST1 85.130 154.340 79.190 90.00 90.00 90.00 C 2 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011747 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006479 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012628 0.00000