PDB Short entry for 4A0J HEADER CELL CYCLE 09-SEP-11 4A0J TITLE CRYSTAL STRUCTURE OF SURVIVIN BOUND TO THE PHOSPHORYLATED N-TERMINAL TITLE 2 TAIL OF HISTONE H3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SURVIVIN, APOPTOSIS INHIBITOR 4, APOPTOSIS INHIBITOR COMPND 5 SURVIVIN; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE H3 PEPTIDE; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: PHOSPHORYLATED AT THR3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606 KEYWDS CELL CYCLE, MITOSIS, CHROMOSOMAL PASSENGER COMPLEX, CHROMATIN EXPDTA X-RAY DIFFRACTION AUTHOR A.A.JEYAPRAKASH,C.BASQUIN,U.JAYACHANDRAN,E.CONTI REVDAT 3 20-DEC-23 4A0J 1 REMARK LINK REVDAT 2 23-NOV-11 4A0J 1 JRNL REVDAT 1 09-NOV-11 4A0J 0 JRNL AUTH A.A.JEYAPRAKASH,C.BASQUIN,U.JAYACHANDRAN,E.CONTI JRNL TITL STRUCTURAL BASIS FOR THE RECOGNITION OF PHOSPHORYLATED JRNL TITL 2 HISTONE H3 BY THE SURVIVIN SUBUNIT OF THE CHROMOSOMAL JRNL TITL 3 PASSENGER COMPLEX. JRNL REF STRUCTURE V. 19 1625 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 22032967 JRNL DOI 10.1016/J.STR.2011.09.002 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 12477 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.9489 - 4.4495 1.00 3026 160 0.1766 0.2455 REMARK 3 2 4.4495 - 3.5319 1.00 2965 156 0.1798 0.2522 REMARK 3 3 3.5319 - 3.0855 1.00 2955 156 0.2287 0.3061 REMARK 3 4 3.0855 - 2.8034 0.98 2906 153 0.3379 0.3945 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 64.46 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 78.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 94.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.31470 REMARK 3 B22 (A**2) : -12.36480 REMARK 3 B33 (A**2) : 10.05010 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 16.08330 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2265 REMARK 3 ANGLE : 1.024 3057 REMARK 3 CHIRALITY : 0.065 324 REMARK 3 PLANARITY : 0.004 402 REMARK 3 DIHEDRAL : 18.508 837 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 5:21) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2462 -33.4062 17.0974 REMARK 3 T TENSOR REMARK 3 T11: 0.4958 T22: 0.7814 REMARK 3 T33: 0.7263 T12: -0.0724 REMARK 3 T13: -0.0487 T23: 0.1863 REMARK 3 L TENSOR REMARK 3 L11: 1.5790 L22: 5.0135 REMARK 3 L33: 3.7952 L12: -2.0936 REMARK 3 L13: -0.3331 L23: -2.3773 REMARK 3 S TENSOR REMARK 3 S11: 0.0266 S12: 0.4657 S13: 0.7272 REMARK 3 S21: -0.3041 S22: -0.2240 S23: -1.2475 REMARK 3 S31: 0.1070 S32: 0.9055 S33: 0.3073 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 22:40) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2992 -47.5809 21.7801 REMARK 3 T TENSOR REMARK 3 T11: 0.4033 T22: 0.3516 REMARK 3 T33: 0.3108 T12: -0.0451 REMARK 3 T13: -0.0892 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 2.6836 L22: 1.5316 REMARK 3 L33: 0.9285 L12: -0.2244 REMARK 3 L13: -1.5631 L23: 0.2821 REMARK 3 S TENSOR REMARK 3 S11: -0.2391 S12: 0.9200 S13: -0.6846 REMARK 3 S21: -0.7227 S22: -0.1717 S23: 0.2376 REMARK 3 S31: 0.0469 S32: -0.2673 S33: -0.5249 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 41:97) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0747 -37.4966 24.2394 REMARK 3 T TENSOR REMARK 3 T11: 0.6388 T22: 0.5864 REMARK 3 T33: 0.5551 T12: -0.0905 REMARK 3 T13: -0.0022 T23: 0.1394 REMARK 3 L TENSOR REMARK 3 L11: 2.8429 L22: 3.1711 REMARK 3 L33: 0.0263 L12: 0.4951 REMARK 3 L13: -0.1325 L23: -0.2818 REMARK 3 S TENSOR REMARK 3 S11: -0.0417 S12: 0.1621 S13: -0.1123 REMARK 3 S21: 0.5383 S22: 0.3030 S23: 0.5624 REMARK 3 S31: -0.1073 S32: -0.1911 S33: -0.0402 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 98:140) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1454 -25.3944 39.4810 REMARK 3 T TENSOR REMARK 3 T11: 0.7262 T22: 0.4518 REMARK 3 T33: 0.7324 T12: -0.0047 REMARK 3 T13: 0.0869 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.2697 L22: 0.0691 REMARK 3 L33: 0.6575 L12: 0.3379 REMARK 3 L13: -0.3330 L23: -0.1406 REMARK 3 S TENSOR REMARK 3 S11: 0.1398 S12: -0.1006 S13: 0.4491 REMARK 3 S21: -0.3843 S22: 0.1635 S23: -0.0366 REMARK 3 S31: -0.3059 S32: -0.0090 S33: -0.1405 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 5:88) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9400 -5.6519 1.9158 REMARK 3 T TENSOR REMARK 3 T11: 0.0157 T22: 0.2566 REMARK 3 T33: 1.1906 T12: -0.2802 REMARK 3 T13: -0.0935 T23: 0.1311 REMARK 3 L TENSOR REMARK 3 L11: 2.6570 L22: 2.0958 REMARK 3 L33: 1.9092 L12: -1.2849 REMARK 3 L13: 0.4605 L23: -1.0569 REMARK 3 S TENSOR REMARK 3 S11: -0.5335 S12: 0.1231 S13: 2.5163 REMARK 3 S21: 0.2231 S22: -0.1525 S23: -1.6534 REMARK 3 S31: -1.5055 S32: 0.3442 S33: -0.2870 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 89:97) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5030 -16.7430 2.8589 REMARK 3 T TENSOR REMARK 3 T11: 0.4731 T22: 0.8738 REMARK 3 T33: 0.6670 T12: -0.1562 REMARK 3 T13: -0.2742 T23: 0.8731 REMARK 3 L TENSOR REMARK 3 L11: 0.2842 L22: 0.2508 REMARK 3 L33: 0.2043 L12: -0.2580 REMARK 3 L13: 0.0022 L23: 0.0449 REMARK 3 S TENSOR REMARK 3 S11: 0.0933 S12: -0.0644 S13: -0.0312 REMARK 3 S21: -0.0756 S22: 0.0563 S23: 0.0979 REMARK 3 S31: -0.0944 S32: -0.1897 S33: 0.3065 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 98:141) REMARK 3 ORIGIN FOR THE GROUP (A): 37.9748 -20.7159 -1.2908 REMARK 3 T TENSOR REMARK 3 T11: 0.4794 T22: 0.4254 REMARK 3 T33: 0.8821 T12: 0.0720 REMARK 3 T13: 0.0777 T23: 0.0561 REMARK 3 L TENSOR REMARK 3 L11: 0.3786 L22: -0.1273 REMARK 3 L33: -0.1014 L12: 0.0357 REMARK 3 L13: -0.1521 L23: -0.0656 REMARK 3 S TENSOR REMARK 3 S11: -0.0505 S12: 0.4417 S13: -0.1436 REMARK 3 S21: -0.5514 S22: 0.0775 S23: 0.2092 REMARK 3 S31: 0.1571 S32: -0.0497 S33: -0.0151 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -0.7652 -39.7270 36.8150 REMARK 3 T TENSOR REMARK 3 T11: 1.2514 T22: 0.6091 REMARK 3 T33: 0.7507 T12: -0.1544 REMARK 3 T13: 0.1365 T23: 0.0771 REMARK 3 L TENSOR REMARK 3 L11: 3.3541 L22: 7.7675 REMARK 3 L33: 4.5376 L12: -2.8885 REMARK 3 L13: 2.0475 L23: 2.3931 REMARK 3 S TENSOR REMARK 3 S11: -0.2471 S12: 0.1671 S13: 0.2576 REMARK 3 S21: 0.8127 S22: 0.2914 S23: -0.3524 REMARK 3 S31: -0.0363 S32: -0.5039 S33: 0.0740 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 32.2301 -5.6436 -5.6244 REMARK 3 T TENSOR REMARK 3 T11: 0.4199 T22: 0.9535 REMARK 3 T33: 1.5786 T12: -0.0496 REMARK 3 T13: 0.2014 T23: 0.2923 REMARK 3 L TENSOR REMARK 3 L11: 0.7319 L22: 0.7113 REMARK 3 L33: 0.1929 L12: 0.7018 REMARK 3 L13: 0.1028 L23: 0.1816 REMARK 3 S TENSOR REMARK 3 S11: 0.1737 S12: 0.1803 S13: 0.0158 REMARK 3 S21: -0.0818 S22: -0.0050 S23: -0.7209 REMARK 3 S31: -0.0822 S32: -0.0118 S33: -0.2424 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 20:85 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 20:85 ) REMARK 3 ATOM PAIRS NUMBER : 486 REMARK 3 RMSD : 0.029 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4A0J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1290049585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12491 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 63.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2QFA REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.0, 18% PEG 4000. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.18250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.44800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.18250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.44800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -0.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 3 REMARK 465 PRO A 4 REMARK 465 MET A 141 REMARK 465 ASP A 142 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 PRO B 4 REMARK 465 ASP B 142 REMARK 465 THR D 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 10 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 10 CZ3 CH2 REMARK 470 ARG A 37 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 GLU A 126 CG CD OE1 OE2 REMARK 470 TRP B 10 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 10 CZ3 CH2 REMARK 470 LEU B 28 CG CD1 CD2 REMARK 470 GLU B 29 CG CD OE1 OE2 REMARK 470 ARG B 37 CG CD NE CZ NH1 NH2 REMARK 470 THR B 48 OG1 CG2 REMARK 470 GLU B 49 CG CD OE1 OE2 REMARK 470 ASN B 50 CG OD1 ND2 REMARK 470 GLU B 65 CG CD OE1 OE2 REMARK 470 GLU B 68 CG CD OE1 OE2 REMARK 470 GLU B 75 CG CD OE1 OE2 REMARK 470 LYS B 79 CG CD CE NZ REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 LYS B 122 CG CD CE NZ REMARK 470 ARG B 133 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 5 CG CD OE1 NE2 REMARK 470 THR C 6 OG1 CG2 REMARK 470 ARG D 2 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 5 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 8 C - N - CA ANGL. DEV. = 10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 7 120.48 -39.06 REMARK 500 SER A 20 -19.50 -46.15 REMARK 500 LEU A 28 -135.78 -108.75 REMARK 500 GLU A 29 -70.25 -25.48 REMARK 500 CYS A 33 56.89 -96.79 REMARK 500 LYS A 79 -73.87 -59.57 REMARK 500 SER A 81 58.44 -164.21 REMARK 500 VAL A 89 97.42 -65.37 REMARK 500 LYS A 120 -36.52 -33.35 REMARK 500 LEU B 28 -136.62 -107.44 REMARK 500 GLU B 29 -71.86 -23.78 REMARK 500 CYS B 33 57.58 -95.62 REMARK 500 LYS B 79 -74.13 -57.91 REMARK 500 SER B 81 56.48 -163.73 REMARK 500 LYS D 4 130.86 -34.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 57 SG REMARK 620 2 CYS A 60 SG 98.0 REMARK 620 3 HIS A 77 NE2 106.8 107.4 REMARK 620 4 CYS A 84 SG 120.5 119.6 103.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 57 SG REMARK 620 2 CYS B 60 SG 95.9 REMARK 620 3 HIS B 77 NE2 109.6 106.2 REMARK 620 4 CYS B 84 SG 121.2 117.9 105.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F3H RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF THE HUMAN ANTI-APOPTOTIC PROTEINSURVIVIN REMARK 900 RELATED ID: 1E31 RELATED DB: PDB REMARK 900 SURVIVIN DIMER H. SAPIENS REMARK 900 RELATED ID: 1XOX RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF HUMAN SURVIVIN REMARK 900 RELATED ID: 4A0I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SURVIVIN BOUND TO THE N-TERMINAL TAIL OF HSGO1 DBREF 4A0J A 1 142 UNP O15392 BIRC5_HUMAN 1 142 DBREF 4A0J B 1 142 UNP O15392 BIRC5_HUMAN 1 142 DBREF 4A0J C 1 6 PDB 4A0J 4A0J 1 6 DBREF 4A0J D 1 6 PDB 4A0J 4A0J 1 6 SEQADV 4A0J LYS A 129 UNP O15392 GLU 129 CONFLICT SEQADV 4A0J LYS B 129 UNP O15392 GLU 129 CONFLICT SEQRES 1 A 142 MET GLY ALA PRO THR LEU PRO PRO ALA TRP GLN PRO PHE SEQRES 2 A 142 LEU LYS ASP HIS ARG ILE SER THR PHE LYS ASN TRP PRO SEQRES 3 A 142 PHE LEU GLU GLY CYS ALA CYS THR PRO GLU ARG MET ALA SEQRES 4 A 142 GLU ALA GLY PHE ILE HIS CYS PRO THR GLU ASN GLU PRO SEQRES 5 A 142 ASP LEU ALA GLN CYS PHE PHE CYS PHE LYS GLU LEU GLU SEQRES 6 A 142 GLY TRP GLU PRO ASP ASP ASP PRO ILE GLU GLU HIS LYS SEQRES 7 A 142 LYS HIS SER SER GLY CYS ALA PHE LEU SER VAL LYS LYS SEQRES 8 A 142 GLN PHE GLU GLU LEU THR LEU GLY GLU PHE LEU LYS LEU SEQRES 9 A 142 ASP ARG GLU ARG ALA LYS ASN LYS ILE ALA LYS GLU THR SEQRES 10 A 142 ASN ASN LYS LYS LYS GLU PHE GLU GLU THR ALA LYS LYS SEQRES 11 A 142 VAL ARG ARG ALA ILE GLU GLN LEU ALA ALA MET ASP SEQRES 1 B 142 MET GLY ALA PRO THR LEU PRO PRO ALA TRP GLN PRO PHE SEQRES 2 B 142 LEU LYS ASP HIS ARG ILE SER THR PHE LYS ASN TRP PRO SEQRES 3 B 142 PHE LEU GLU GLY CYS ALA CYS THR PRO GLU ARG MET ALA SEQRES 4 B 142 GLU ALA GLY PHE ILE HIS CYS PRO THR GLU ASN GLU PRO SEQRES 5 B 142 ASP LEU ALA GLN CYS PHE PHE CYS PHE LYS GLU LEU GLU SEQRES 6 B 142 GLY TRP GLU PRO ASP ASP ASP PRO ILE GLU GLU HIS LYS SEQRES 7 B 142 LYS HIS SER SER GLY CYS ALA PHE LEU SER VAL LYS LYS SEQRES 8 B 142 GLN PHE GLU GLU LEU THR LEU GLY GLU PHE LEU LYS LEU SEQRES 9 B 142 ASP ARG GLU ARG ALA LYS ASN LYS ILE ALA LYS GLU THR SEQRES 10 B 142 ASN ASN LYS LYS LYS GLU PHE GLU GLU THR ALA LYS LYS SEQRES 11 B 142 VAL ARG ARG ALA ILE GLU GLN LEU ALA ALA MET ASP SEQRES 1 C 6 ALA ARG TPO LYS GLN THR SEQRES 1 D 6 ALA ARG TPO LYS GLN THR MODRES 4A0J TPO C 3 THR PHOSPHOTHREONINE MODRES 4A0J TPO D 3 THR PHOSPHOTHREONINE HET TPO C 3 11 HET TPO D 3 11 HET ZN A 801 1 HET ZN B 801 1 HETNAM TPO PHOSPHOTHREONINE HETNAM ZN ZINC ION HETSYN TPO PHOSPHONOTHREONINE FORMUL 3 TPO 2(C4 H10 N O6 P) FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *8(H2 O) HELIX 1 1 PRO A 7 PHE A 13 5 7 HELIX 2 2 LEU A 14 THR A 21 1 8 HELIX 3 3 THR A 34 GLU A 40 1 7 HELIX 4 4 ASP A 72 SER A 82 1 11 HELIX 5 5 ALA A 85 VAL A 89 5 5 HELIX 6 6 GLN A 92 LEU A 96 5 5 HELIX 7 7 THR A 97 ALA A 140 1 44 HELIX 8 8 TRP B 10 PHE B 13 5 4 HELIX 9 9 LEU B 14 THR B 21 1 8 HELIX 10 10 THR B 34 GLU B 40 1 7 HELIX 11 11 ASP B 72 SER B 82 1 11 HELIX 12 12 ALA B 85 VAL B 89 5 5 HELIX 13 13 GLN B 92 LEU B 96 5 5 HELIX 14 14 THR B 97 ALA B 140 1 44 SHEET 1 AA 4 PHE A 43 HIS A 45 0 SHEET 2 AA 4 ALA A 55 CYS A 57 -1 O GLN A 56 N ILE A 44 SHEET 3 AA 4 GLU A 63 GLU A 65 -1 O LEU A 64 N ALA A 55 SHEET 4 AA 4 ARG C 2 TPO C 3 -1 O ARG C 2 N GLU A 65 SHEET 1 BA 4 PHE B 43 HIS B 45 0 SHEET 2 BA 4 ALA B 55 CYS B 57 -1 O GLN B 56 N ILE B 44 SHEET 3 BA 4 GLU B 63 GLU B 65 -1 O LEU B 64 N ALA B 55 SHEET 4 BA 4 ARG D 2 TPO D 3 -1 O ARG D 2 N GLU B 65 LINK C ARG C 2 N TPO C 3 1555 1555 1.33 LINK C TPO C 3 N LYS C 4 1555 1555 1.33 LINK C ARG D 2 N TPO D 3 1555 1555 1.33 LINK C TPO D 3 N LYS D 4 1555 1555 1.33 LINK SG CYS A 57 ZN ZN A 801 1555 1555 2.37 LINK SG CYS A 60 ZN ZN A 801 1555 1555 2.44 LINK NE2 HIS A 77 ZN ZN A 801 1555 1555 2.28 LINK SG CYS A 84 ZN ZN A 801 1555 1555 2.36 LINK SG CYS B 57 ZN ZN B 801 1555 1555 2.31 LINK SG CYS B 60 ZN ZN B 801 1555 1555 2.56 LINK NE2 HIS B 77 ZN ZN B 801 1555 1555 2.25 LINK SG CYS B 84 ZN ZN B 801 1555 1555 2.33 SITE 1 AC1 4 CYS A 57 CYS A 60 HIS A 77 CYS A 84 SITE 1 AC2 4 CYS B 57 CYS B 60 HIS B 77 CYS B 84 CRYST1 114.365 70.896 81.465 90.00 129.03 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008744 0.000000 0.007088 0.00000 SCALE2 0.000000 0.014105 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015802 0.00000 MTRIX1 1 0.128100 0.092290 0.987500 0.42300 1 MTRIX2 1 0.078030 -0.993512 0.082734 -46.93800 1 MTRIX3 1 0.988692 0.066460 -0.134430 3.65750 1