PDB Short entry for 4A9C HEADER HYDROLASE 25-NOV-11 4A9C TITLE CRYSTAL STRUCTURE OF HUMAN SHIP2 IN COMPLEX WITH BIPHENYL 2,3',4,5',6- TITLE 2 PENTAKISPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL-3,4,5-TRISPHOSPHATE 5-PHOSPHATASE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PHOSPHATASE DOMAIN, RESIDUES 419-732; COMPND 5 SYNONYM: INOSITOL POLYPHOSPHATE PHOSPHATASE-LIKE PROTEIN 1, INPPL-1, COMPND 6 PROTEIN 51C, SH2 DOMAIN-CONTAINING INOSITOL-5'-PHOSPHATASE 2, SH2 COMPND 7 DOMAIN-CONTAINING INOSITOL PHOSPHATASE 2, SHIP-2; COMPND 8 EC: 3.1.3.86; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3 PRARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-MBP KEYWDS SGC, PHOSPHATIDYLINOSITOL, SIGNALLING, STRUCTURAL GENOMICS CONSORTIUM KEYWDS 2 STOCKHOLM, MAGNESIUM BINDING, HYDROLASE, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR L.TRESAUGUES,C.H.ARROWSMITH,H.BERGLUND,C.BOUNTRA,A.M.EDWARDS, AUTHOR 2 T.EKBLAD,S.GRASLUND,T.KARLBERG,S.J.MILLS,M.MOCHE,T.NYMAN,C.PERSSON, AUTHOR 3 B.V.L.POTTER,H.SCHULER,A.G.THORSELL,J.WEIGELT,P.NORDLUND REVDAT 2 20-DEC-23 4A9C 1 REMARK REVDAT 1 30-MAY-12 4A9C 0 JRNL AUTH S.J.MILLS,C.PERSSON,G.COZIER,M.P.THOMAS,L.TRESAUGUES, JRNL AUTH 2 C.ERNEUX,A.M.RILEY,P.NORDLUND,B.V.L.POTTER JRNL TITL A SYNTHETIC POLYPHOSPHOINOSITIDE HEADGROUP SURROGATE IN JRNL TITL 2 COMPLEX WITH SHIP2 PROVIDES A RATIONALE FOR DRUG DISCOVERY. JRNL REF ACS CHEM.BIOL. V. 7 822 2012 JRNL REFN ISSN 1554-8929 JRNL PMID 22330088 JRNL DOI 10.1021/CB200494D REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 36540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1787 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.16 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.74 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2970 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2302 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2825 REMARK 3 BIN R VALUE (WORKING SET) : 0.2285 REMARK 3 BIN FREE R VALUE : 0.2641 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.88 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 145 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4686 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25140 REMARK 3 B22 (A**2) : 5.05850 REMARK 3 B33 (A**2) : 0.80710 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.92530 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.361 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.232 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.170 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.232 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.172 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4863 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6614 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2206 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 109 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 702 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4863 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 624 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5711 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.90 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.36 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.91 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 422-547 REMARK 3 ORIGIN FOR THE GROUP (A): -22.5392 9.1345 -6.8035 REMARK 3 T TENSOR REMARK 3 T11: -0.0559 T22: -0.1717 REMARK 3 T33: -0.0989 T12: 0.0391 REMARK 3 T13: 0.0334 T23: -0.0732 REMARK 3 L TENSOR REMARK 3 L11: 2.2083 L22: 5.6561 REMARK 3 L33: 4.1922 L12: 0.5023 REMARK 3 L13: 0.2859 L23: 2.5798 REMARK 3 S TENSOR REMARK 3 S11: -0.0367 S12: -0.2293 S13: 0.1487 REMARK 3 S21: 0.1618 S22: 0.2846 S23: -0.1288 REMARK 3 S31: -0.2800 S32: -0.0725 S33: -0.2479 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 548-571 REMARK 3 ORIGIN FOR THE GROUP (A): -13.3368 7.5451 -17.8700 REMARK 3 T TENSOR REMARK 3 T11: 0.0184 T22: -0.0834 REMARK 3 T33: -0.0025 T12: -0.1350 REMARK 3 T13: 0.1288 T23: -0.1469 REMARK 3 L TENSOR REMARK 3 L11: 1.1051 L22: 2.8548 REMARK 3 L33: -0.1752 L12: -0.4221 REMARK 3 L13: -2.5668 L23: 0.0781 REMARK 3 S TENSOR REMARK 3 S11: -0.0344 S12: 0.0163 S13: 0.1495 REMARK 3 S21: -0.0461 S22: 0.1351 S23: -0.2804 REMARK 3 S31: 0.0283 S32: 0.0575 S33: -0.1007 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 572-596 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8854 10.6235 -22.9896 REMARK 3 T TENSOR REMARK 3 T11: -0.0042 T22: -0.0096 REMARK 3 T33: 0.0818 T12: -0.1475 REMARK 3 T13: 0.1495 T23: -0.1413 REMARK 3 L TENSOR REMARK 3 L11: 0.4334 L22: 0.0000 REMARK 3 L33: 0.6220 L12: 2.5820 REMARK 3 L13: -0.9280 L23: -0.4154 REMARK 3 S TENSOR REMARK 3 S11: -0.0198 S12: -0.0060 S13: 0.0187 REMARK 3 S21: 0.0443 S22: 0.0192 S23: -0.0874 REMARK 3 S31: 0.0059 S32: 0.0165 S33: 0.0006 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 597-622 REMARK 3 ORIGIN FOR THE GROUP (A): -18.0507 -1.0171 -23.9347 REMARK 3 T TENSOR REMARK 3 T11: -0.0198 T22: -0.0292 REMARK 3 T33: -0.0056 T12: -0.1275 REMARK 3 T13: 0.1024 T23: -0.0642 REMARK 3 L TENSOR REMARK 3 L11: 0.1196 L22: 2.0053 REMARK 3 L33: 0.1353 L12: -1.5205 REMARK 3 L13: -1.0701 L23: 1.8529 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: 0.0803 S13: 0.0776 REMARK 3 S21: -0.0174 S22: 0.1436 S23: -0.1574 REMARK 3 S31: -0.0480 S32: -0.0713 S33: -0.1518 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND RESID 623-696 REMARK 3 ORIGIN FOR THE GROUP (A): -21.8989 -4.2117 -24.2997 REMARK 3 T TENSOR REMARK 3 T11: -0.1034 T22: -0.1094 REMARK 3 T33: -0.0848 T12: -0.0699 REMARK 3 T13: 0.0650 T23: -0.0857 REMARK 3 L TENSOR REMARK 3 L11: 4.1360 L22: 3.8652 REMARK 3 L33: 5.7278 L12: -0.2198 REMARK 3 L13: -0.0275 L23: 2.7118 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: 0.2041 S13: -0.0365 REMARK 3 S21: -0.1579 S22: 0.2426 S23: -0.1743 REMARK 3 S31: -0.0856 S32: 0.0440 S33: -0.2353 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND RESID 697-731 REMARK 3 ORIGIN FOR THE GROUP (A): -18.4286 -1.3459 -9.6091 REMARK 3 T TENSOR REMARK 3 T11: 0.0445 T22: -0.0947 REMARK 3 T33: -0.0175 T12: 0.0285 REMARK 3 T13: 0.0185 T23: -0.0800 REMARK 3 L TENSOR REMARK 3 L11: 0.5083 L22: 2.8027 REMARK 3 L33: 3.6577 L12: 0.7726 REMARK 3 L13: 0.1669 L23: 0.8489 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: -0.0586 S13: 0.0351 REMARK 3 S21: 0.1401 S22: 0.1236 S23: -0.2040 REMARK 3 S31: 0.0778 S32: 0.0914 S33: -0.1181 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND RESID 422-472 REMARK 3 ORIGIN FOR THE GROUP (A): -1.4362 24.8201 -42.7464 REMARK 3 T TENSOR REMARK 3 T11: -0.1707 T22: 0.2492 REMARK 3 T33: -0.1008 T12: 0.0360 REMARK 3 T13: 0.0013 T23: -0.1511 REMARK 3 L TENSOR REMARK 3 L11: 0.0744 L22: 2.0117 REMARK 3 L33: 1.6447 L12: -0.7597 REMARK 3 L13: 0.4507 L23: 1.0540 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: 0.0448 S13: -0.2216 REMARK 3 S21: 0.1243 S22: -0.0247 S23: 0.0120 REMARK 3 S31: 0.2620 S32: 0.0867 S33: 0.0253 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND RESID 473-544 REMARK 3 ORIGIN FOR THE GROUP (A): -5.7805 23.9849 -54.5916 REMARK 3 T TENSOR REMARK 3 T11: -0.2275 T22: 0.2794 REMARK 3 T33: -0.1266 T12: 0.0530 REMARK 3 T13: 0.0132 T23: -0.1509 REMARK 3 L TENSOR REMARK 3 L11: 0.5032 L22: 1.9519 REMARK 3 L33: 2.1793 L12: -0.5060 REMARK 3 L13: 0.1359 L23: 1.8954 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: 0.1815 S13: -0.1207 REMARK 3 S21: -0.0934 S22: 0.0256 S23: 0.0050 REMARK 3 S31: 0.1966 S32: 0.0543 S33: -0.0387 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND RESID 545-584 REMARK 3 ORIGIN FOR THE GROUP (A): -13.7459 38.6543 -50.2149 REMARK 3 T TENSOR REMARK 3 T11: -0.2118 T22: 0.2829 REMARK 3 T33: -0.1146 T12: -0.0168 REMARK 3 T13: 0.0158 T23: -0.1521 REMARK 3 L TENSOR REMARK 3 L11: 0.8912 L22: 0.5712 REMARK 3 L33: 2.4729 L12: -0.9238 REMARK 3 L13: -0.3436 L23: -0.2941 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: 0.3156 S13: 0.0002 REMARK 3 S21: -0.0977 S22: -0.0573 S23: 0.0551 REMARK 3 S31: 0.0023 S32: 0.0038 S33: 0.0344 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND RESID 585-671 REMARK 3 ORIGIN FOR THE GROUP (A): -6.2711 41.7847 -37.5322 REMARK 3 T TENSOR REMARK 3 T11: -0.1347 T22: 0.1434 REMARK 3 T33: -0.1141 T12: -0.0701 REMARK 3 T13: 0.0465 T23: -0.1272 REMARK 3 L TENSOR REMARK 3 L11: 3.6848 L22: 2.0144 REMARK 3 L33: 1.1201 L12: -0.2274 REMARK 3 L13: -0.3758 L23: 1.2013 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: -0.0290 S13: 0.0860 REMARK 3 S21: 0.1698 S22: -0.0633 S23: -0.0125 REMARK 3 S31: 0.0933 S32: 0.1177 S33: 0.0225 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND RESID 672-685 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3880 51.6878 -44.6941 REMARK 3 T TENSOR REMARK 3 T11: -0.0124 T22: 0.1358 REMARK 3 T33: -0.0153 T12: -0.0218 REMARK 3 T13: 0.0404 T23: -0.0426 REMARK 3 L TENSOR REMARK 3 L11: 0.4671 L22: 0.2965 REMARK 3 L33: 0.2871 L12: 0.2412 REMARK 3 L13: 0.4424 L23: -0.2536 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: -0.0009 S13: 0.0713 REMARK 3 S21: -0.0284 S22: -0.0221 S23: 0.0359 REMARK 3 S31: -0.0231 S32: -0.0081 S33: 0.0290 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND RESID 686-731 REMARK 3 ORIGIN FOR THE GROUP (A): -8.4357 30.7347 -39.5013 REMARK 3 T TENSOR REMARK 3 T11: -0.1358 T22: 0.1510 REMARK 3 T33: -0.1120 T12: -0.0581 REMARK 3 T13: -0.0079 T23: -0.1541 REMARK 3 L TENSOR REMARK 3 L11: 0.1132 L22: 2.5974 REMARK 3 L33: 1.5352 L12: -0.3336 REMARK 3 L13: -1.2311 L23: 0.2862 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: -0.0523 S13: -0.1140 REMARK 3 S21: 0.1174 S22: -0.0016 S23: 0.1265 REMARK 3 S31: 0.2315 S32: -0.0510 S33: 0.0052 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY. REMARK 4 REMARK 4 4A9C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1290050462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.939280 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36559 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 45.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3NR8 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 MM BIPHENYL 2,3,4,5, 6 REMARK 280 -PENTAKISPHOSPHATE, 2 MM MGSO4, 11% PEG 6000, 0.1 M CITRIC ACID REMARK 280 PH 4.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.76000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 417 REMARK 465 MET A 418 REMARK 465 ASP A 419 REMARK 465 GLU A 420 REMARK 465 PRO A 421 REMARK 465 ILE A 534 REMARK 465 ALA A 535 REMARK 465 ASN A 536 REMARK 465 THR A 537 REMARK 465 LEU A 538 REMARK 465 GLY A 539 REMARK 465 GLY A 586 REMARK 465 ASP A 587 REMARK 465 ARG A 588 REMARK 465 GLN A 589 REMARK 465 LEU A 590 REMARK 465 ASN A 591 REMARK 465 ALA A 592 REMARK 465 LYS A 675 REMARK 465 GLN A 676 REMARK 465 LYS A 677 REMARK 465 PRO A 678 REMARK 465 THR A 679 REMARK 465 GLY A 680 REMARK 465 VAL A 681 REMARK 465 ARG A 682 REMARK 465 GLN A 732 REMARK 465 SER B 417 REMARK 465 MET B 418 REMARK 465 ASP B 419 REMARK 465 GLU B 420 REMARK 465 PRO B 421 REMARK 465 VAL B 458 REMARK 465 THR B 459 REMARK 465 VAL B 460 REMARK 465 GLY B 533 REMARK 465 ILE B 534 REMARK 465 ALA B 535 REMARK 465 ASN B 536 REMARK 465 THR B 537 REMARK 465 LEU B 538 REMARK 465 GLY B 539 REMARK 465 GLY B 586 REMARK 465 ASP B 587 REMARK 465 ARG B 588 REMARK 465 GLN B 589 REMARK 465 LEU B 590 REMARK 465 ASN B 591 REMARK 465 ALA B 592 REMARK 465 PHE B 593 REMARK 465 GLN B 732 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 422 CG OD1 OD2 REMARK 470 ASN A 540 CG OD1 ND2 REMARK 470 PHE A 593 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 629 CG CD OE1 OE2 REMARK 470 GLU A 654 CG CD OE1 OE2 REMARK 470 MET B 423 CG SD CE REMARK 470 ARG B 581 CD NE CZ NH1 NH2 REMARK 470 GLU B 629 CD OE1 OE2 REMARK 470 GLN B 676 CG CD OE1 NE2 REMARK 470 HIS B 701 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 726 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 506 -94.18 59.36 REMARK 500 ASN A 551 -110.27 62.94 REMARK 500 TYR A 707 106.99 -161.39 REMARK 500 TRP B 506 -105.42 61.86 REMARK 500 ASN B 551 -112.55 64.36 REMARK 500 LYS B 568 44.64 -108.32 REMARK 500 TYR B 707 111.37 -161.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B5F B 1732 DBREF 4A9C A 419 732 UNP O15357 SHIP2_HUMAN 419 732 DBREF 4A9C B 419 732 UNP O15357 SHIP2_HUMAN 419 732 SEQADV 4A9C SER A 417 UNP O15357 EXPRESSION TAG SEQADV 4A9C MET A 418 UNP O15357 EXPRESSION TAG SEQADV 4A9C SER B 417 UNP O15357 EXPRESSION TAG SEQADV 4A9C MET B 418 UNP O15357 EXPRESSION TAG SEQRES 1 A 316 SER MET ASP GLU PRO ASP MET ILE SER VAL PHE ILE GLY SEQRES 2 A 316 THR TRP ASN MET GLY SER VAL PRO PRO PRO LYS ASN VAL SEQRES 3 A 316 THR SER TRP PHE THR SER LYS GLY LEU GLY LYS THR LEU SEQRES 4 A 316 ASP GLU VAL THR VAL THR ILE PRO HIS ASP ILE TYR VAL SEQRES 5 A 316 PHE GLY THR GLN GLU ASN SER VAL GLY ASP ARG GLU TRP SEQRES 6 A 316 LEU ASP LEU LEU ARG GLY GLY LEU LYS GLU LEU THR ASP SEQRES 7 A 316 LEU ASP TYR ARG PRO ILE ALA MET GLN SER LEU TRP ASN SEQRES 8 A 316 ILE LYS VAL ALA VAL LEU VAL LYS PRO GLU HIS GLU ASN SEQRES 9 A 316 ARG ILE SER HIS VAL SER THR SER SER VAL LYS THR GLY SEQRES 10 A 316 ILE ALA ASN THR LEU GLY ASN LYS GLY ALA VAL GLY VAL SEQRES 11 A 316 SER PHE MET PHE ASN GLY THR SER PHE GLY PHE VAL ASN SEQRES 12 A 316 CYS HIS LEU THR SER GLY ASN GLU LYS THR ALA ARG ARG SEQRES 13 A 316 ASN GLN ASN TYR LEU ASP ILE LEU ARG LEU LEU SER LEU SEQRES 14 A 316 GLY ASP ARG GLN LEU ASN ALA PHE ASP ILE SER LEU ARG SEQRES 15 A 316 PHE THR HIS LEU PHE TRP PHE GLY ASP LEU ASN TYR ARG SEQRES 16 A 316 LEU ASP MET ASP ILE GLN GLU ILE LEU ASN TYR ILE SER SEQRES 17 A 316 ARG LYS GLU PHE GLU PRO LEU LEU ARG VAL ASP GLN LEU SEQRES 18 A 316 ASN LEU GLU ARG GLU LYS HIS LYS VAL PHE LEU ARG PHE SEQRES 19 A 316 SER GLU GLU GLU ILE SER PHE PRO PRO THR TYR ARG TYR SEQRES 20 A 316 GLU ARG GLY SER ARG ASP THR TYR ALA TRP HIS LYS GLN SEQRES 21 A 316 LYS PRO THR GLY VAL ARG THR ASN VAL PRO SER TRP CYS SEQRES 22 A 316 ASP ARG ILE LEU TRP LYS SER TYR PRO GLU THR HIS ILE SEQRES 23 A 316 ILE CYS ASN SER TYR GLY CYS THR ASP ASP ILE VAL THR SEQRES 24 A 316 SER ASP HIS SER PRO VAL PHE GLY THR PHE GLU VAL GLY SEQRES 25 A 316 VAL THR SER GLN SEQRES 1 B 316 SER MET ASP GLU PRO ASP MET ILE SER VAL PHE ILE GLY SEQRES 2 B 316 THR TRP ASN MET GLY SER VAL PRO PRO PRO LYS ASN VAL SEQRES 3 B 316 THR SER TRP PHE THR SER LYS GLY LEU GLY LYS THR LEU SEQRES 4 B 316 ASP GLU VAL THR VAL THR ILE PRO HIS ASP ILE TYR VAL SEQRES 5 B 316 PHE GLY THR GLN GLU ASN SER VAL GLY ASP ARG GLU TRP SEQRES 6 B 316 LEU ASP LEU LEU ARG GLY GLY LEU LYS GLU LEU THR ASP SEQRES 7 B 316 LEU ASP TYR ARG PRO ILE ALA MET GLN SER LEU TRP ASN SEQRES 8 B 316 ILE LYS VAL ALA VAL LEU VAL LYS PRO GLU HIS GLU ASN SEQRES 9 B 316 ARG ILE SER HIS VAL SER THR SER SER VAL LYS THR GLY SEQRES 10 B 316 ILE ALA ASN THR LEU GLY ASN LYS GLY ALA VAL GLY VAL SEQRES 11 B 316 SER PHE MET PHE ASN GLY THR SER PHE GLY PHE VAL ASN SEQRES 12 B 316 CYS HIS LEU THR SER GLY ASN GLU LYS THR ALA ARG ARG SEQRES 13 B 316 ASN GLN ASN TYR LEU ASP ILE LEU ARG LEU LEU SER LEU SEQRES 14 B 316 GLY ASP ARG GLN LEU ASN ALA PHE ASP ILE SER LEU ARG SEQRES 15 B 316 PHE THR HIS LEU PHE TRP PHE GLY ASP LEU ASN TYR ARG SEQRES 16 B 316 LEU ASP MET ASP ILE GLN GLU ILE LEU ASN TYR ILE SER SEQRES 17 B 316 ARG LYS GLU PHE GLU PRO LEU LEU ARG VAL ASP GLN LEU SEQRES 18 B 316 ASN LEU GLU ARG GLU LYS HIS LYS VAL PHE LEU ARG PHE SEQRES 19 B 316 SER GLU GLU GLU ILE SER PHE PRO PRO THR TYR ARG TYR SEQRES 20 B 316 GLU ARG GLY SER ARG ASP THR TYR ALA TRP HIS LYS GLN SEQRES 21 B 316 LYS PRO THR GLY VAL ARG THR ASN VAL PRO SER TRP CYS SEQRES 22 B 316 ASP ARG ILE LEU TRP LYS SER TYR PRO GLU THR HIS ILE SEQRES 23 B 316 ILE CYS ASN SER TYR GLY CYS THR ASP ASP ILE VAL THR SEQRES 24 B 316 SER ASP HIS SER PRO VAL PHE GLY THR PHE GLU VAL GLY SEQRES 25 B 316 VAL THR SER GLN HET B5F B1732 37 HETNAM B5F BIPHENYL 2,3',4,5',6-PENTAKISPHOSPHATE FORMUL 3 B5F C12 H15 O20 P5 FORMUL 4 HOH *252(H2 O) HELIX 1 1 VAL A 442 THR A 447 1 6 HELIX 2 2 VAL A 458 ILE A 462 5 5 HELIX 3 3 GLY A 477 ASP A 494 1 18 HELIX 4 4 PRO A 516 ASN A 520 5 5 HELIX 5 5 LYS A 568 LEU A 583 1 16 HELIX 6 6 ASP A 615 ARG A 625 1 11 HELIX 7 7 PHE A 628 ARG A 633 1 6 HELIX 8 8 ASP A 635 LYS A 643 1 9 HELIX 9 9 VAL B 442 THR B 447 1 6 HELIX 10 10 GLY B 477 ASP B 494 1 18 HELIX 11 11 PRO B 516 ASN B 520 5 5 HELIX 12 12 LYS B 568 LEU B 583 1 16 HELIX 13 13 ASP B 594 ARG B 598 5 5 HELIX 14 14 ASP B 615 LYS B 626 1 12 HELIX 15 15 PHE B 628 ARG B 633 1 6 HELIX 16 16 ASP B 635 LYS B 643 1 9 SHEET 1 AA 7 LEU A 451 LYS A 453 0 SHEET 2 AA 7 ILE A 702 CYS A 709 -1 O TYR A 707 N LYS A 453 SHEET 3 AA 7 VAL A 721 GLY A 728 -1 O PHE A 722 N GLY A 708 SHEET 4 AA 7 MET A 423 ASN A 432 -1 O ILE A 424 N VAL A 727 SHEET 5 AA 7 ILE A 466 GLN A 472 1 O ILE A 466 N PHE A 427 SHEET 6 AA 7 ILE A 508 VAL A 514 -1 O LYS A 509 N THR A 471 SHEET 7 AA 7 ARG A 498 LEU A 505 -1 O ARG A 498 N VAL A 514 SHEET 1 AB 5 ILE A 522 THR A 532 0 SHEET 2 AB 5 LYS A 541 PHE A 550 -1 O LYS A 541 N THR A 532 SHEET 3 AB 5 THR A 553 HIS A 561 -1 O THR A 553 N PHE A 550 SHEET 4 AB 5 HIS A 601 ASP A 607 1 O HIS A 601 N GLY A 556 SHEET 5 AB 5 ASP A 690 SER A 696 -1 O ARG A 691 N GLY A 606 SHEET 1 BA 7 LEU B 451 LYS B 453 0 SHEET 2 BA 7 ILE B 702 CYS B 709 -1 O TYR B 707 N LYS B 453 SHEET 3 BA 7 VAL B 721 GLY B 728 -1 O PHE B 722 N GLY B 708 SHEET 4 BA 7 MET B 423 ASN B 432 -1 O ILE B 424 N VAL B 727 SHEET 5 BA 7 ILE B 466 GLN B 472 1 O ILE B 466 N PHE B 427 SHEET 6 BA 7 ILE B 508 VAL B 514 -1 O LYS B 509 N THR B 471 SHEET 7 BA 7 ARG B 498 LEU B 505 -1 O ARG B 498 N VAL B 514 SHEET 1 BB 5 ILE B 522 LYS B 531 0 SHEET 2 BB 5 GLY B 542 PHE B 550 -1 O ALA B 543 N VAL B 530 SHEET 3 BB 5 THR B 553 HIS B 561 -1 O THR B 553 N PHE B 550 SHEET 4 BB 5 HIS B 601 ASP B 607 1 O HIS B 601 N GLY B 556 SHEET 5 BB 5 ASP B 690 SER B 696 -1 O ARG B 691 N GLY B 606 SHEET 1 BC 2 HIS B 674 LYS B 677 0 SHEET 2 BC 2 GLY B 680 THR B 683 -1 O GLY B 680 N LYS B 677 CISPEP 1 TYR A 661 ARG A 662 0 -4.22 CISPEP 2 TYR B 661 ARG B 662 0 -1.20 SITE 1 AC1 17 LYS B 541 THR B 563 SER B 564 GLY B 565 SITE 2 AC1 17 ASN B 566 ARG B 611 TYR B 661 ARG B 682 SITE 3 AC1 17 THR B 683 ASN B 684 HOH B2025 HOH B2047 SITE 4 AC1 17 HOH B2048 HOH B2103 HOH B2104 HOH B2114 SITE 5 AC1 17 HOH B2115 CRYST1 45.246 61.520 114.742 90.00 91.94 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022101 0.000000 0.000749 0.00000 SCALE2 0.000000 0.016255 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008720 0.00000 MTRIX1 1 -0.991000 0.107000 -0.074000 -32.91100 1 MTRIX2 1 0.072000 -0.023000 -0.997000 -39.27300 1 MTRIX3 1 -0.108000 -0.994000 0.015000 17.71300 1