PDB Short entry for 4AWB HEADER HYDROLASE/INHIBITOR 01-JUN-12 4AWB TITLE CRYSTAL STRUCTURE OF ACTIVE LEGUMAIN IN COMPLEX WITH AAN-CMK COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEGUMAIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 26-309; COMPND 5 SYNONYM: ASPARAGINYL ENDOPEPTIDASE, PROTEASE\, CYSTEINE 1; COMPND 6 EC: 3.4.22.34; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: Z-ALA-ALA-AZAASN-CHLOROMETHYLKETONE; COMPND 11 CHAIN: I, J; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: LEISHMANIA TARENTOLAE; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 5689; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: P10; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS HYDROLASE-INHIBITOR COMPLEX, HYDROLASE, CYSTEINE PROTEASE, LYSOSOMAL, KEYWDS 2 AEP, SUBSTRATE SPECIFICITY, MHCII, ANTIGEN PROCESSING, CANCER EXPDTA X-RAY DIFFRACTION AUTHOR E.DALL,H.BRANDSTETTER REVDAT 3 29-JUL-20 4AWB 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 17-JUL-13 4AWB 1 JRNL REVDAT 1 26-JUN-13 4AWB 0 JRNL AUTH E.DALL,H.BRANDSTETTER JRNL TITL MECHANISTIC AND STRUCTURAL STUDIES ON LEGUMAIN EXPLAIN ITS JRNL TITL 2 ZYMOGENICITY, DISTINCT ACTIVATION PATHWAYS, AND REGULATION JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 10940 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23776206 JRNL DOI 10.1073/PNAS.1300686110 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 14732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 763 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1004 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4257 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.15000 REMARK 3 B22 (A**2) : 9.15000 REMARK 3 B33 (A**2) : -18.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.309 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.682 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.888 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.853 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4411 ; 0.006 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5991 ; 0.962 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 521 ; 4.853 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 218 ;36.065 ;24.679 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 706 ;15.828 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ; 9.992 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 637 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3410 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.811 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H, K, -L REMARK 3 TWIN FRACTION : 0.189 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4AWB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1290052728. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0032 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17704 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.560 REMARK 200 RESOLUTION RANGE LOW (A) : 72.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4AW9 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 0.2 M REMARK 280 LITHIUMSULFATE MONOHYDRATE, 25 % PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.19500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.09750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.29250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASN 263 TO GLN REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ASN 263 TO GLN REMARK 400 REMARK 400 THE Z-ALA-ALA-AZAASN-CHLOROMETHYLKETONE IS PEPTIDE-LIKE, A MEMBER REMARK 400 OF INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: Z-ALA-ALA-AZAASN-CHLOROMETHYLKETONE REMARK 400 CHAIN: I, J REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 287 REMARK 465 ARG A 288 REMARK 465 LYS A 289 REMARK 465 ALA A 290 REMARK 465 SER A 291 REMARK 465 SER A 292 REMARK 465 PRO A 293 REMARK 465 VAL A 294 REMARK 465 PRO A 295 REMARK 465 LEU A 296 REMARK 465 PRO A 297 REMARK 465 PRO A 298 REMARK 465 VAL A 299 REMARK 465 THR A 300 REMARK 465 HIS A 301 REMARK 465 LEU A 302 REMARK 465 ASP A 303 REMARK 465 LEU A 304 REMARK 465 THR A 305 REMARK 465 PRO A 306 REMARK 465 SER A 307 REMARK 465 PRO A 308 REMARK 465 ASP A 309 REMARK 465 ARG B 288 REMARK 465 LYS B 289 REMARK 465 ALA B 290 REMARK 465 SER B 291 REMARK 465 SER B 292 REMARK 465 PRO B 293 REMARK 465 VAL B 294 REMARK 465 PRO B 295 REMARK 465 LEU B 296 REMARK 465 PRO B 297 REMARK 465 PRO B 298 REMARK 465 VAL B 299 REMARK 465 THR B 300 REMARK 465 HIS B 301 REMARK 465 LEU B 302 REMARK 465 ASP B 303 REMARK 465 LEU B 304 REMARK 465 THR B 305 REMARK 465 PRO B 306 REMARK 465 SER B 307 REMARK 465 PRO B 308 REMARK 465 ASP B 309 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 28 -21.82 -142.33 REMARK 500 ASP A 147 -156.70 -177.17 REMARK 500 ASN A 158 -85.99 -130.43 REMARK 500 TYR A 220 76.15 61.63 REMARK 500 LYS B 28 -0.24 -152.83 REMARK 500 ASN B 42 32.75 -94.00 REMARK 500 ASP B 72 37.04 73.37 REMARK 500 ASN B 91 22.90 47.73 REMARK 500 LYS B 101 69.69 -114.38 REMARK 500 LYS B 134 31.11 -91.14 REMARK 500 ASP B 147 -138.72 -174.45 REMARK 500 SER B 150 -157.33 -121.54 REMARK 500 ASN B 158 -85.98 -120.24 REMARK 500 TYR B 179 147.38 -174.96 REMARK 500 PRO B 212 -6.96 -57.06 REMARK 500 TYR B 220 87.07 65.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AW9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ACTIVE LEGUMAIN IN COMPLEX WITH YVAD-CMK REMARK 900 RELATED ID: 4AWA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ACTIVE LEGUMAIN IN COMPLEX WITH YVAD-CMK AT PH REMARK 900 5.0 REMARK 900 RELATED ID: 4FGU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROLEGUMAIN DBREF 4AWB A 26 309 UNP Q99538 LGMN_HUMAN 26 309 DBREF 4AWB B 26 309 UNP Q99538 LGMN_HUMAN 26 309 DBREF 4AWB I 300 304 PDB 4AWB 4AWB 300 304 DBREF 4AWB J 300 304 PDB 4AWB 4AWB 300 304 SEQADV 4AWB GLN A 263 UNP Q99538 ASN 263 ENGINEERED MUTATION SEQADV 4AWB GLN B 263 UNP Q99538 ASN 263 ENGINEERED MUTATION SEQRES 1 A 284 GLY GLY LYS HIS TRP VAL VAL ILE VAL ALA GLY SER ASN SEQRES 2 A 284 GLY TRP TYR ASN TYR ARG HIS GLN ALA ASP ALA CYS HIS SEQRES 3 A 284 ALA TYR GLN ILE ILE HIS ARG ASN GLY ILE PRO ASP GLU SEQRES 4 A 284 GLN ILE VAL VAL MET MET TYR ASP ASP ILE ALA TYR SER SEQRES 5 A 284 GLU ASP ASN PRO THR PRO GLY ILE VAL ILE ASN ARG PRO SEQRES 6 A 284 ASN GLY THR ASP VAL TYR GLN GLY VAL PRO LYS ASP TYR SEQRES 7 A 284 THR GLY GLU ASP VAL THR PRO GLN ASN PHE LEU ALA VAL SEQRES 8 A 284 LEU ARG GLY ASP ALA GLU ALA VAL LYS GLY ILE GLY SER SEQRES 9 A 284 GLY LYS VAL LEU LYS SER GLY PRO GLN ASP HIS VAL PHE SEQRES 10 A 284 ILE TYR PHE THR ASP HIS GLY SER THR GLY ILE LEU VAL SEQRES 11 A 284 PHE PRO ASN GLU ASP LEU HIS VAL LYS ASP LEU ASN GLU SEQRES 12 A 284 THR ILE HIS TYR MET TYR LYS HIS LYS MET TYR ARG LYS SEQRES 13 A 284 MET VAL PHE TYR ILE GLU ALA CYS GLU SER GLY SER MET SEQRES 14 A 284 MET ASN HIS LEU PRO ASP ASN ILE ASN VAL TYR ALA THR SEQRES 15 A 284 THR ALA ALA ASN PRO ARG GLU SER SER TYR ALA CYS TYR SEQRES 16 A 284 TYR ASP GLU LYS ARG SER THR TYR LEU GLY ASP TRP TYR SEQRES 17 A 284 SER VAL ASN TRP MET GLU ASP SER ASP VAL GLU ASP LEU SEQRES 18 A 284 THR LYS GLU THR LEU HIS LYS GLN TYR HIS LEU VAL LYS SEQRES 19 A 284 SER HIS THR GLN THR SER HIS VAL MET GLN TYR GLY ASN SEQRES 20 A 284 LYS THR ILE SER THR MET LYS VAL MET GLN PHE GLN GLY SEQRES 21 A 284 MET LYS ARG LYS ALA SER SER PRO VAL PRO LEU PRO PRO SEQRES 22 A 284 VAL THR HIS LEU ASP LEU THR PRO SER PRO ASP SEQRES 1 B 284 GLY GLY LYS HIS TRP VAL VAL ILE VAL ALA GLY SER ASN SEQRES 2 B 284 GLY TRP TYR ASN TYR ARG HIS GLN ALA ASP ALA CYS HIS SEQRES 3 B 284 ALA TYR GLN ILE ILE HIS ARG ASN GLY ILE PRO ASP GLU SEQRES 4 B 284 GLN ILE VAL VAL MET MET TYR ASP ASP ILE ALA TYR SER SEQRES 5 B 284 GLU ASP ASN PRO THR PRO GLY ILE VAL ILE ASN ARG PRO SEQRES 6 B 284 ASN GLY THR ASP VAL TYR GLN GLY VAL PRO LYS ASP TYR SEQRES 7 B 284 THR GLY GLU ASP VAL THR PRO GLN ASN PHE LEU ALA VAL SEQRES 8 B 284 LEU ARG GLY ASP ALA GLU ALA VAL LYS GLY ILE GLY SER SEQRES 9 B 284 GLY LYS VAL LEU LYS SER GLY PRO GLN ASP HIS VAL PHE SEQRES 10 B 284 ILE TYR PHE THR ASP HIS GLY SER THR GLY ILE LEU VAL SEQRES 11 B 284 PHE PRO ASN GLU ASP LEU HIS VAL LYS ASP LEU ASN GLU SEQRES 12 B 284 THR ILE HIS TYR MET TYR LYS HIS LYS MET TYR ARG LYS SEQRES 13 B 284 MET VAL PHE TYR ILE GLU ALA CYS GLU SER GLY SER MET SEQRES 14 B 284 MET ASN HIS LEU PRO ASP ASN ILE ASN VAL TYR ALA THR SEQRES 15 B 284 THR ALA ALA ASN PRO ARG GLU SER SER TYR ALA CYS TYR SEQRES 16 B 284 TYR ASP GLU LYS ARG SER THR TYR LEU GLY ASP TRP TYR SEQRES 17 B 284 SER VAL ASN TRP MET GLU ASP SER ASP VAL GLU ASP LEU SEQRES 18 B 284 THR LYS GLU THR LEU HIS LYS GLN TYR HIS LEU VAL LYS SEQRES 19 B 284 SER HIS THR GLN THR SER HIS VAL MET GLN TYR GLY ASN SEQRES 20 B 284 LYS THR ILE SER THR MET LYS VAL MET GLN PHE GLN GLY SEQRES 21 B 284 MET LYS ARG LYS ALA SER SER PRO VAL PRO LEU PRO PRO SEQRES 22 B 284 VAL THR HIS LEU ASP LEU THR PRO SER PRO ASP SEQRES 1 I 5 PHQ ALA ALA ZSN 0QE SEQRES 1 J 5 PHQ ALA ALA ZSN 0QE MODRES 4AWB ASN A 91 ASN GLYCOSYLATION SITE MODRES 4AWB ASN A 167 ASN GLYCOSYLATION SITE MODRES 4AWB ASN A 272 ASN GLYCOSYLATION SITE MODRES 4AWB ASN B 91 ASN GLYCOSYLATION SITE MODRES 4AWB ASN B 167 ASN GLYCOSYLATION SITE MODRES 4AWB ASN B 272 ASN GLYCOSYLATION SITE HET PHQ I 300 10 HET ZSN I 303 8 HET 0QE I 304 1 HET PHQ J 300 10 HET ZSN J 303 8 HET 0QE J 304 1 HET NAG A 310 14 HET NAG A 311 14 HET NAG A 312 14 HET SO4 A 320 5 HET HG A 325 1 HET HG A 326 1 HET NAG B 310 14 HET NAG B 311 14 HET NAG B 312 14 HET SO4 B 320 5 HET HG B 325 1 HET HG B 326 1 HETNAM PHQ BENZYL CHLOROCARBONATE HETNAM ZSN 1-(2-AMINO-2-OXOETHYL)HYDRAZINECARBOXYLIC ACID HETNAM 0QE CHLOROMETHANE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM HG MERCURY (II) ION HETSYN ZSN AZA-ASPARAGINE HETSYN 0QE CHLORO METHYL GROUP FORMUL 3 PHQ 2(C8 H7 CL O2) FORMUL 3 ZSN 2(C3 H7 N3 O3) FORMUL 3 0QE 2(C H3 CL) FORMUL 5 NAG 6(C8 H15 N O6) FORMUL 8 SO4 2(O4 S 2-) FORMUL 9 HG 4(HG 2+) FORMUL 17 HOH *91(H2 O) HELIX 1 2 ASN A 42 ASN A 59 1 18 HELIX 2 3 PRO A 62 GLU A 64 5 3 HELIX 3 4 THR A 109 GLY A 119 1 11 HELIX 4 5 ALA A 121 LYS A 125 5 5 HELIX 5 6 VAL A 163 HIS A 176 1 14 HELIX 6 7 GLU A 190 MET A 195 5 6 HELIX 7 8 TRP A 232 GLU A 244 1 13 HELIX 8 9 THR A 250 THR A 262 1 13 HELIX 9 10 LYS A 273 MET A 278 5 6 HELIX 10 11 VAL A 280 GLY A 285 1 6 HELIX 11 12 ASN B 42 ASN B 59 1 18 HELIX 12 13 PRO B 62 GLU B 64 5 3 HELIX 13 15 THR B 109 GLY B 119 1 11 HELIX 14 16 ALA B 121 LYS B 125 5 5 HELIX 15 17 VAL B 163 HIS B 176 1 14 HELIX 16 18 GLU B 190 MET B 195 5 6 HELIX 17 19 TRP B 232 GLU B 244 1 13 HELIX 18 20 THR B 250 THR B 262 1 13 HELIX 19 21 LYS B 273 MET B 278 5 6 HELIX 20 22 VAL B 280 GLY B 285 1 6 SHEET 1 AA 6 ILE A 66 MET A 69 0 SHEET 2 AA 6 HIS A 29 ALA A 35 1 O VAL A 31 N VAL A 67 SHEET 3 AA 6 HIS A 140 THR A 146 1 O HIS A 140 N TRP A 30 SHEET 4 AA 6 LYS A 181 GLU A 187 1 O LYS A 181 N VAL A 141 SHEET 5 AA 6 VAL A 204 THR A 208 1 O TYR A 205 N PHE A 184 SHEET 6 AA 6 MET A 268 GLY A 271 -1 O MET A 268 N THR A 208 SHEET 1 AB 3 GLY A 149 SER A 150 0 SHEET 2 AB 3 ILE A 153 VAL A 155 -1 O ILE A 153 N SER A 150 SHEET 3 AB 3 ASP A 160 HIS A 162 -1 O LEU A 161 N LEU A 154 SHEET 1 AC 2 ALA A 218 ASP A 222 0 SHEET 2 AC 2 THR A 227 ASP A 231 -1 O THR A 227 N ASP A 222 SHEET 1 BA 6 ILE B 66 MET B 69 0 SHEET 2 BA 6 HIS B 29 ALA B 35 1 O VAL B 31 N VAL B 67 SHEET 3 BA 6 HIS B 140 THR B 146 1 O HIS B 140 N TRP B 30 SHEET 4 BA 6 LYS B 181 GLU B 187 1 O LYS B 181 N VAL B 141 SHEET 5 BA 6 VAL B 204 THR B 208 1 O TYR B 205 N PHE B 184 SHEET 6 BA 6 MET B 268 GLY B 271 -1 O MET B 268 N THR B 208 SHEET 1 BB 3 GLY B 149 SER B 150 0 SHEET 2 BB 3 ILE B 153 VAL B 155 -1 O ILE B 153 N SER B 150 SHEET 3 BB 3 ASP B 160 HIS B 162 -1 O LEU B 161 N LEU B 154 SHEET 1 BC 2 ALA B 218 ASP B 222 0 SHEET 2 BC 2 THR B 227 ASP B 231 -1 O THR B 227 N ASP B 222 LINK ND2 ASN A 91 C1 NAG A 312 1555 1555 1.43 LINK ND2 ASN A 167 C1 NAG A 310 1555 1555 1.45 LINK SG CYS A 189 C1 0QE I 304 1555 1555 1.74 LINK ND2 ASN A 272 C1 NAG A 311 1555 1555 1.45 LINK ND2 ASN B 91 C1 NAG B 312 1555 1555 1.53 LINK ND2 ASN B 167 C1 NAG B 310 1555 1555 1.44 LINK SG CYS B 189 C1 0QE J 304 1555 1555 1.64 LINK ND2 ASN B 272 C1 NAG B 311 1555 1555 1.44 LINK C1 PHQ I 300 N ALA I 301 1555 1555 1.34 LINK C ALA I 302 N ZSN I 303 1555 1555 1.34 LINK C ZSN I 303 C1 0QE I 304 1555 1555 1.49 LINK C1 PHQ J 300 N ALA J 301 1555 1555 1.32 LINK C ALA J 302 N ZSN J 303 1555 1555 1.32 LINK C ZSN J 303 C1 0QE J 304 1555 1555 1.51 LINK NE2 HIS A 162 HG HG A 326 1555 1555 2.42 LINK SG CYS A 219 HG HG A 325 1555 1555 2.08 LINK NE2 HIS B 162 HG HG B 326 1555 1555 2.43 LINK SG CYS B 219 HG HG B 325 1555 1555 2.22 CRYST1 63.900 63.900 144.390 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015649 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015649 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006926 0.00000