PDB Short entry for 4C2X HEADER TRANSFERASE 20-AUG-13 4C2X TITLE HUMAN N-MYRISTOYLTRANSFERASE ISOFORM 2 (NMT2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 112-498; COMPND 5 SYNONYM: GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE, MYRISTOYL- COMPND 6 COA\:PROTEIN N-MYRISTOYLTRANSFERASE 2, NMT 2, PEPTIDE N- COMPND 7 MYRISTOYLTRANSFERASE 2, TYPE II N-MYRISTOYLTRANSFERASE; COMPND 8 EC: 2.3.1.97; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PRARES; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 DERIVATIVE KEYWDS TRANSFERASE, MYRISTOYLATION EXPDTA X-RAY DIFFRACTION AUTHOR E.THINON,R.A.SERWA,J.A.BRANNIGAN,U.BRASSAT,M.H.WRIGHT,W.P.HEAL, AUTHOR 2 A.J.WILKINSON,D.J.MANN,E.W.TATE REVDAT 3 20-DEC-23 4C2X 1 REMARK LINK REVDAT 2 08-OCT-14 4C2X 1 JRNL REVDAT 1 01-OCT-14 4C2X 0 JRNL AUTH E.THINON,R.A.SERWA,M.BRONCEL,J.A.BRANNIGAN,U.BRASSAT, JRNL AUTH 2 M.H.WRIGHT,W.P.HEAL,A.J.WILKINSON,D.J.MANN,E.W.TATE JRNL TITL GLOBAL PROFILING OF CO- AND POST-TRANSLATIONALLY JRNL TITL 2 N-MYRISTOYLATED PROTEOMES IN HUMAN CELLS. JRNL REF NAT.COMMUN. V. 5 4919 2014 JRNL REFN ESSN 2041-1723 JRNL PMID 25255805 JRNL DOI 10.1038/NCOMMS5919 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0033 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 940 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1270 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3182 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.12000 REMARK 3 B22 (A**2) : -1.72000 REMARK 3 B33 (A**2) : 0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.470 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.299 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.267 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.200 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3370 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4582 ; 1.672 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 395 ; 6.997 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;34.994 ;23.548 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 586 ;19.790 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;19.078 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 500 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2527 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1559 ; 4.248 ; 5.411 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1949 ; 6.202 ; 8.110 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1811 ; 4.452 ; 5.432 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4C2X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1290058108. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18414 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 57.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3IU1 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2M KCL, 100 MM NA REMARK 280 CITRATE PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.85000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.34500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.16000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.34500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.85000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.16000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 87 REMARK 465 GLY A 88 REMARK 465 SER A 89 REMARK 465 SER A 90 REMARK 465 HIS A 91 REMARK 465 HIS A 92 REMARK 465 HIS A 93 REMARK 465 HIS A 94 REMARK 465 HIS A 95 REMARK 465 HIS A 96 REMARK 465 SER A 97 REMARK 465 SER A 98 REMARK 465 GLY A 99 REMARK 465 LEU A 100 REMARK 465 GLU A 101 REMARK 465 VAL A 102 REMARK 465 LEU A 103 REMARK 465 PHE A 104 REMARK 465 GLN A 105 REMARK 465 GLY A 106 REMARK 465 PRO A 107 REMARK 465 HIS A 108 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 234 O PHE A 360 1.88 REMARK 500 OE1 GLU A 171 NH2 ARG A 215 2.16 REMARK 500 O ASP A 183 ND2 ASN A 186 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 234 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 111 60.92 -60.31 REMARK 500 PRO A 124 73.04 -65.95 REMARK 500 ASN A 177 -35.43 -39.87 REMARK 500 ASP A 191 67.97 -117.46 REMARK 500 LYS A 220 18.70 58.95 REMARK 500 TYR A 236 -108.61 48.43 REMARK 500 HIS A 313 56.06 71.64 REMARK 500 PRO A 330 172.10 -58.23 REMARK 500 ILE A 381 -59.73 -132.61 REMARK 500 ASN A 391 -79.38 -80.79 REMARK 500 HIS A 409 72.36 38.04 REMARK 500 PHE A 422 -107.99 -113.17 REMARK 500 SER A 444 2.32 -61.23 REMARK 500 MET A 456 -136.16 43.13 REMARK 500 ASN A 480 43.65 70.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 129 GLU A 130 149.18 REMARK 500 SER A 312 HIS A 313 44.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 S-(2-OXO)PENTADECYLCOA (NHW): NON-HYDROLYSABLE REMARK 600 MYRISTOYL-COA DERIVATIVE REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 999 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 254 O REMARK 620 2 NHW A1000 O4A 99.1 REMARK 620 3 NHW A1000 O2A 161.4 63.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NHW A 1000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C2Y RELATED DB: PDB REMARK 900 HUMAN N-MYRISTOYLTRANSFERASE (NMT1) WITH MYRISTOYL-COA CO-FACTOR REMARK 900 RELATED ID: 4C2Z RELATED DB: PDB REMARK 900 HUMAN N-MYRISTOYLTRANSFERASE (NMT1) WITH MYRISTOYL-COA AND REMARK 900 INHIBITOR BOUND DBREF 4C2X A 110 496 UNP O60551 NMT2_HUMAN 112 498 SEQADV 4C2X MET A 87 UNP O60551 EXPRESSION TAG SEQADV 4C2X GLY A 88 UNP O60551 EXPRESSION TAG SEQADV 4C2X SER A 89 UNP O60551 EXPRESSION TAG SEQADV 4C2X SER A 90 UNP O60551 EXPRESSION TAG SEQADV 4C2X HIS A 91 UNP O60551 EXPRESSION TAG SEQADV 4C2X HIS A 92 UNP O60551 EXPRESSION TAG SEQADV 4C2X HIS A 93 UNP O60551 EXPRESSION TAG SEQADV 4C2X HIS A 94 UNP O60551 EXPRESSION TAG SEQADV 4C2X HIS A 95 UNP O60551 EXPRESSION TAG SEQADV 4C2X HIS A 96 UNP O60551 EXPRESSION TAG SEQADV 4C2X SER A 97 UNP O60551 EXPRESSION TAG SEQADV 4C2X SER A 98 UNP O60551 EXPRESSION TAG SEQADV 4C2X GLY A 99 UNP O60551 EXPRESSION TAG SEQADV 4C2X LEU A 100 UNP O60551 EXPRESSION TAG SEQADV 4C2X GLU A 101 UNP O60551 EXPRESSION TAG SEQADV 4C2X VAL A 102 UNP O60551 EXPRESSION TAG SEQADV 4C2X LEU A 103 UNP O60551 EXPRESSION TAG SEQADV 4C2X PHE A 104 UNP O60551 EXPRESSION TAG SEQADV 4C2X GLN A 105 UNP O60551 EXPRESSION TAG SEQADV 4C2X GLY A 106 UNP O60551 EXPRESSION TAG SEQADV 4C2X PRO A 107 UNP O60551 EXPRESSION TAG SEQADV 4C2X HIS A 108 UNP O60551 EXPRESSION TAG SEQADV 4C2X MET A 109 UNP O60551 EXPRESSION TAG SEQADV 4C2X LYS A 304 UNP O60551 ARG 306 VARIANT SEQRES 1 A 410 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 410 LEU GLU VAL LEU PHE GLN GLY PRO HIS MET ASP GLU ALA SEQRES 3 A 410 ALA LYS HIS ARG TYR GLN PHE TRP ASP THR GLN PRO VAL SEQRES 4 A 410 PRO LYS LEU ASP GLU VAL ILE THR SER HIS GLY ALA ILE SEQRES 5 A 410 GLU PRO ASP LYS ASP ASN VAL ARG GLN GLU PRO TYR SER SEQRES 6 A 410 LEU PRO GLN GLY PHE MET TRP ASP THR LEU ASP LEU SER SEQRES 7 A 410 ASP ALA GLU VAL LEU LYS GLU LEU TYR THR LEU LEU ASN SEQRES 8 A 410 GLU ASN TYR VAL GLU ASP ASP ASP ASN MET PHE ARG PHE SEQRES 9 A 410 ASP TYR SER PRO GLU PHE LEU LEU TRP ALA LEU ARG PRO SEQRES 10 A 410 PRO GLY TRP LEU LEU GLN TRP HIS CYS GLY VAL ARG VAL SEQRES 11 A 410 SER SER ASN LYS LYS LEU VAL GLY PHE ILE SER ALA ILE SEQRES 12 A 410 PRO ALA ASN ILE ARG ILE TYR ASP SER VAL LYS LYS MET SEQRES 13 A 410 VAL GLU ILE ASN PHE LEU CYS VAL HIS LYS LYS LEU ARG SEQRES 14 A 410 SER LYS ARG VAL ALA PRO VAL LEU ILE ARG GLU ILE THR SEQRES 15 A 410 ARG ARG VAL ASN LEU GLU GLY ILE PHE GLN ALA VAL TYR SEQRES 16 A 410 THR ALA GLY VAL VAL LEU PRO LYS PRO ILE ALA THR CYS SEQRES 17 A 410 ARG TYR TRP HIS ARG SER LEU ASN PRO LYS LYS LEU VAL SEQRES 18 A 410 GLU VAL LYS PHE SER HIS LEU SER ARG ASN MET THR LEU SEQRES 19 A 410 GLN ARG THR MET LYS LEU TYR ARG LEU PRO ASP VAL THR SEQRES 20 A 410 LYS THR SER GLY LEU ARG PRO MET GLU PRO LYS ASP ILE SEQRES 21 A 410 LYS SER VAL ARG GLU LEU ILE ASN THR TYR LEU LYS GLN SEQRES 22 A 410 PHE HIS LEU ALA PRO VAL MET ASP GLU GLU GLU VAL ALA SEQRES 23 A 410 HIS TRP PHE LEU PRO ARG GLU HIS ILE ILE ASP THR PHE SEQRES 24 A 410 VAL VAL GLU SER PRO ASN GLY LYS LEU THR ASP PHE LEU SEQRES 25 A 410 SER PHE TYR THR LEU PRO SER THR VAL MET HIS HIS PRO SEQRES 26 A 410 ALA HIS LYS SER LEU LYS ALA ALA TYR SER PHE TYR ASN SEQRES 27 A 410 ILE HIS THR GLU THR PRO LEU LEU ASP LEU MET SER ASP SEQRES 28 A 410 ALA LEU ILE LEU ALA LYS SER LYS GLY PHE ASP VAL PHE SEQRES 29 A 410 ASN ALA LEU ASP LEU MET GLU ASN LYS THR PHE LEU GLU SEQRES 30 A 410 LYS LEU LYS PHE GLY ILE GLY ASP GLY ASN LEU GLN TYR SEQRES 31 A 410 TYR LEU TYR ASN TRP ARG CYS PRO GLY THR ASP SER GLU SEQRES 32 A 410 LYS VAL GLY LEU VAL LEU GLN HET MG A 999 1 HET NHW A1000 64 HETNAM MG MAGNESIUM ION HETNAM NHW 2-OXOPENTADECYL-COA FORMUL 2 MG MG 2+ FORMUL 3 NHW C36 H64 N7 O17 P3 S FORMUL 4 HOH *68(H2 O) HELIX 1 1 PHE A 119 GLN A 123 5 5 HELIX 2 2 ASP A 165 TYR A 180 1 16 HELIX 3 3 SER A 193 ARG A 202 1 10 HELIX 4 4 LEU A 207 GLN A 209 5 3 HELIX 5 5 LYS A 252 ARG A 255 5 4 HELIX 6 6 VAL A 259 LEU A 273 1 15 HELIX 7 7 ASN A 302 VAL A 309 1 8 HELIX 8 8 THR A 319 TYR A 327 1 9 HELIX 9 9 GLU A 342 LYS A 344 5 3 HELIX 10 10 ASP A 345 LEU A 357 1 13 HELIX 11 11 LYS A 358 PHE A 360 5 3 HELIX 12 12 ASP A 367 LEU A 376 1 10 HELIX 13 13 PRO A 430 SER A 444 1 15 HELIX 14 14 GLU A 457 PHE A 461 5 5 HELIX 15 15 ASP A 487 LYS A 490 5 4 SHEET 1 AA 4 PHE A 156 THR A 160 0 SHEET 2 AA 4 HIS A 211 VAL A 216 -1 O GLY A 213 N ASP A 159 SHEET 3 AA 4 LEU A 222 ILE A 235 -1 N VAL A 223 O VAL A 214 SHEET 4 AA 4 LEU A 362 PRO A 364 1 O ALA A 363 N ARG A 234 SHEET 1 AB11 PHE A 156 THR A 160 0 SHEET 2 AB11 HIS A 211 VAL A 216 -1 O GLY A 213 N ASP A 159 SHEET 3 AB11 LEU A 222 ILE A 235 -1 N VAL A 223 O VAL A 214 SHEET 4 AB11 SER A 238 VAL A 250 -1 O SER A 238 N ILE A 235 SHEET 5 AB11 ALA A 279 ALA A 283 1 O VAL A 280 N ILE A 245 SHEET 6 AB11 GLY A 468 TYR A 479 -1 O GLN A 475 N ALA A 283 SHEET 7 AB11 ALA A 292 SER A 300 -1 O ALA A 292 N TYR A 476 SHEET 8 AB11 VAL A 449 LEU A 453 -1 O PHE A 450 N ARG A 299 SHEET 9 AB11 ALA A 418 SER A 421 1 O ALA A 419 N ASN A 451 SHEET 10 AB11 LEU A 394 THR A 402 -1 O TYR A 401 N TYR A 420 SHEET 11 AB11 ILE A 425 HIS A 426 -1 O ILE A 425 N PHE A 397 SHEET 1 AC12 PHE A 156 THR A 160 0 SHEET 2 AC12 HIS A 211 VAL A 216 -1 O GLY A 213 N ASP A 159 SHEET 3 AC12 LEU A 222 ILE A 235 -1 N VAL A 223 O VAL A 214 SHEET 4 AC12 SER A 238 VAL A 250 -1 O SER A 238 N ILE A 235 SHEET 5 AC12 ALA A 279 ALA A 283 1 O VAL A 280 N ILE A 245 SHEET 6 AC12 GLY A 468 TYR A 479 -1 O GLN A 475 N ALA A 283 SHEET 7 AC12 ALA A 292 SER A 300 -1 O ALA A 292 N TYR A 476 SHEET 8 AC12 VAL A 449 LEU A 453 -1 O PHE A 450 N ARG A 299 SHEET 9 AC12 ALA A 418 SER A 421 1 O ALA A 419 N ASN A 451 SHEET 10 AC12 LEU A 394 THR A 402 -1 O TYR A 401 N TYR A 420 SHEET 11 AC12 ILE A 382 GLU A 388 -1 O ASP A 383 N PHE A 400 SHEET 12 AC12 LEU A 338 PRO A 340 -1 O ARG A 339 N VAL A 386 SHEET 1 AD 2 LEU A 362 PRO A 364 0 SHEET 2 AD 2 LEU A 222 ILE A 235 1 O ARG A 234 N ALA A 363 SHEET 1 AE 2 ILE A 425 HIS A 426 0 SHEET 2 AE 2 LEU A 394 THR A 402 -1 O PHE A 397 N ILE A 425 SHEET 1 AF 3 PHE A 188 PHE A 190 0 SHEET 2 AF 3 SER A 405 VAL A 407 -1 O THR A 406 N ARG A 189 SHEET 3 AF 3 SER A 415 LEU A 416 -1 O LEU A 416 N SER A 405 LINK O LEU A 254 MG MG A 999 1555 1555 2.71 LINK MG MG A 999 O4A NHW A1000 1555 1555 2.82 LINK MG MG A 999 O2A NHW A1000 1555 1555 2.68 CISPEP 1 PRO A 288 LYS A 289 0 -12.18 CISPEP 2 ARG A 316 ASN A 317 0 -6.48 SITE 1 AC1 7 LEU A 254 ARG A 255 SER A 256 LYS A 257 SITE 2 AC1 7 ARG A 258 VAL A 259 NHW A1000 SITE 1 AC2 31 HIS A 115 TYR A 117 GLN A 118 PHE A 119 SITE 2 AC2 31 TRP A 120 ASN A 179 ILE A 245 ASN A 246 SITE 3 AC2 31 PHE A 247 LEU A 248 CYS A 249 VAL A 250 SITE 4 AC2 31 ARG A 255 SER A 256 ARG A 258 VAL A 259 SITE 5 AC2 31 ALA A 260 PRO A 261 ILE A 264 THR A 268 SITE 6 AC2 31 VAL A 271 PHE A 277 GLN A 278 TYR A 281 SITE 7 AC2 31 THR A 282 ALA A 283 LEU A 287 MG A 999 SITE 8 AC2 31 HOH A2001 HOH A2067 HOH A2068 CRYST1 49.700 72.320 114.690 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020121 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008719 0.00000