PDB Short entry for 4CGY HEADER DNA REPLICATION/ISOMERASE 27-NOV-13 4CGY TITLE CRYSTAL STRUCTURE OF THE HUMAN TOPOISOMERASE III ALPHA-RMI1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TOPOISOMERASE 3-ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-753; COMPND 5 SYNONYM: DNA TOPOISOMERASE III ALPHA; COMPND 6 EC: 5.99.1.2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RESIDUES 1-219; COMPND 12 SYNONYM: BLM-ASSOCIATED PROTEIN OF 75 KDA, BLAP75, FAAP75; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 15 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 17 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS DNA REPLICATION-ISOMERASE COMPLEX, DOUBLE HOLLIDAY JUNCTION KEYWDS 2 DISSOLUTION, DECATENATION, MINIMAL DISSOLVASOME EXPDTA X-RAY DIFFRACTION AUTHOR N.BOCQUET,R.D.BUNKER,N.H.THOMA REVDAT 5 20-DEC-23 4CGY 1 REMARK LINK REVDAT 4 03-APR-19 4CGY 1 SOURCE REVDAT 3 19-MAR-14 4CGY 1 JRNL REVDAT 2 19-FEB-14 4CGY 1 JRNL REVDAT 1 12-FEB-14 4CGY 0 JRNL AUTH N.BOCQUET,A.H.BIZARD,W.ABDULRAHMAN,N.B.LARSEN,M.FATY, JRNL AUTH 2 S.CAVADINI,R.D.BUNKER,S.C.KOWALCZYKOWSKI,P.CEJKA, JRNL AUTH 3 I.D.HICKSON,N.H.THOMA JRNL TITL STRUCTURAL AND MECHANISTIC INSIGHT INTO HOLLIDAY-JUNCTION JRNL TITL 2 DISSOLUTION BY TOPOISOMERASE IIIALPHA AND RMI1 JRNL REF NAT.STRUCT.MOL.BIOL. V. 21 261 2014 JRNL REFN ISSN 1545-9993 JRNL PMID 24509834 JRNL DOI 10.1038/NSMB.2775 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 41229 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2075 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.92 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2965 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2419 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2829 REMARK 3 BIN R VALUE (WORKING SET) : 0.2403 REMARK 3 BIN FREE R VALUE : 0.2759 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.59 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 136 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6557 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 93.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.64740 REMARK 3 B22 (A**2) : -8.64740 REMARK 3 B33 (A**2) : 17.29470 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.439 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.376 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.260 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.374 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.263 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6700 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9086 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 3142 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 184 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 956 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6700 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 869 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7326 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.69 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -20.8564 7.5298 31.4428 REMARK 3 T TENSOR REMARK 3 T11: -0.0998 T22: -0.2789 REMARK 3 T33: -0.1970 T12: -0.1054 REMARK 3 T13: 0.0099 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.4358 L22: 1.3313 REMARK 3 L33: 1.6744 L12: -0.1675 REMARK 3 L13: -0.0175 L23: 0.2573 REMARK 3 S TENSOR REMARK 3 S11: 0.0063 S12: 0.0628 S13: -0.0481 REMARK 3 S21: -0.1540 S22: -0.0120 S23: 0.1392 REMARK 3 S31: -0.1249 S32: 0.1985 S33: 0.0057 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -50.2695 -14.2355 -10.6020 REMARK 3 T TENSOR REMARK 3 T11: -0.0789 T22: -0.0087 REMARK 3 T33: -0.1631 T12: 0.0128 REMARK 3 T13: -0.1457 T23: -0.0348 REMARK 3 L TENSOR REMARK 3 L11: 2.0083 L22: 2.7450 REMARK 3 L33: 2.8026 L12: 2.4240 REMARK 3 L13: 1.9332 L23: 2.4468 REMARK 3 S TENSOR REMARK 3 S11: -0.2244 S12: -0.2050 S13: 0.1526 REMARK 3 S21: -0.1383 S22: -0.0156 S23: 0.0414 REMARK 3 S31: -0.4143 S32: -0.2804 S33: 0.2400 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CGY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1290059092. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 10 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41328 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 62.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 100.0 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1ECL AND 3NBI REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8-12% (W/V) PEG 2000, 100 MM TRIS-HCL REMARK 280 PH 7.0, 200 MM MGCL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 190.84500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.00500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.00500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 95.42250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.00500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.00500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 286.26750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.00500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.00500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 95.42250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.00500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.00500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 286.26750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 190.84500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ARG A 1 REMARK 465 ILE A 2 REMARK 465 PHE A 3 REMARK 465 PRO A 4 REMARK 465 VAL A 5 REMARK 465 ALA A 6 REMARK 465 ARG A 7 REMARK 465 TYR A 8 REMARK 465 ALA A 9 REMARK 465 LEU A 10 REMARK 465 ARG A 11 REMARK 465 TRP A 12 REMARK 465 LEU A 13 REMARK 465 ARG A 14 REMARK 465 ARG A 15 REMARK 465 PRO A 16 REMARK 465 GLU A 17 REMARK 465 ASP A 18 REMARK 465 ARG A 19 REMARK 465 ALA A 20 REMARK 465 GLU A 640 REMARK 465 LEU A 641 REMARK 465 ALA A 642 REMARK 465 GLN A 643 REMARK 465 GLN A 644 REMARK 465 GLU A 645 REMARK 465 ASP A 646 REMARK 465 ILE A 647 REMARK 465 TYR A 648 REMARK 465 PRO A 649 REMARK 465 ALA A 650 REMARK 465 MET A 651 REMARK 465 PRO A 652 REMARK 465 GLU A 653 REMARK 465 PRO A 654 REMARK 465 ILE A 655 REMARK 465 ARG A 656 REMARK 465 LYS A 657 REMARK 465 CYS A 658 REMARK 465 PRO A 659 REMARK 465 GLN A 660 REMARK 465 CYS A 661 REMARK 465 ASN A 662 REMARK 465 LYS A 663 REMARK 465 ASP A 664 REMARK 465 MET A 665 REMARK 465 VAL A 666 REMARK 465 LEU A 667 REMARK 465 LYS A 668 REMARK 465 THR A 669 REMARK 465 LYS A 670 REMARK 465 LYS A 671 REMARK 465 ASN A 672 REMARK 465 GLY A 673 REMARK 465 GLY A 674 REMARK 465 PHE A 675 REMARK 465 TYR A 676 REMARK 465 LEU A 677 REMARK 465 SER A 678 REMARK 465 CYS A 679 REMARK 465 MET A 680 REMARK 465 GLY A 681 REMARK 465 PHE A 682 REMARK 465 PRO A 683 REMARK 465 GLU A 684 REMARK 465 CYS A 685 REMARK 465 ARG A 686 REMARK 465 SER A 687 REMARK 465 ALA A 688 REMARK 465 VAL A 689 REMARK 465 TRP A 690 REMARK 465 LEU A 691 REMARK 465 PRO A 692 REMARK 465 ASP A 693 REMARK 465 SER A 694 REMARK 465 VAL A 695 REMARK 465 LEU A 696 REMARK 465 GLU A 697 REMARK 465 ALA A 698 REMARK 465 SER A 699 REMARK 465 ARG A 700 REMARK 465 ASP A 701 REMARK 465 SER A 702 REMARK 465 SER A 703 REMARK 465 VAL A 704 REMARK 465 CYS A 705 REMARK 465 PRO A 706 REMARK 465 VAL A 707 REMARK 465 CYS A 708 REMARK 465 GLN A 709 REMARK 465 PRO A 710 REMARK 465 HIS A 711 REMARK 465 PRO A 712 REMARK 465 VAL A 713 REMARK 465 TYR A 714 REMARK 465 ARG A 715 REMARK 465 LEU A 716 REMARK 465 LYS A 717 REMARK 465 LEU A 718 REMARK 465 LYS A 719 REMARK 465 PHE A 720 REMARK 465 LYS A 721 REMARK 465 ARG A 722 REMARK 465 GLY A 723 REMARK 465 SER A 724 REMARK 465 LEU A 725 REMARK 465 PRO A 726 REMARK 465 PRO A 727 REMARK 465 THR A 728 REMARK 465 MET A 729 REMARK 465 PRO A 730 REMARK 465 LEU A 731 REMARK 465 GLU A 732 REMARK 465 PHE A 733 REMARK 465 VAL A 734 REMARK 465 CYS A 735 REMARK 465 CYS A 736 REMARK 465 ILE A 737 REMARK 465 GLY A 738 REMARK 465 GLY A 739 REMARK 465 CYS A 740 REMARK 465 ASP A 741 REMARK 465 ASP A 742 REMARK 465 THR A 743 REMARK 465 LEU A 744 REMARK 465 ARG A 745 REMARK 465 GLU A 746 REMARK 465 ILE A 747 REMARK 465 LEU A 748 REMARK 465 ASP A 749 REMARK 465 LEU A 750 REMARK 465 ARG A 751 REMARK 465 PHE A 752 REMARK 465 SER A 753 REMARK 465 MET B 1 REMARK 465 GLN B 121 REMARK 465 VAL B 122 REMARK 465 THR B 123 REMARK 465 PRO B 124 REMARK 465 LYS B 125 REMARK 465 PRO B 126 REMARK 465 TRP B 127 REMARK 465 GLU B 128 REMARK 465 ALA B 129 REMARK 465 LYS B 130 REMARK 465 VAL B 217 REMARK 465 VAL B 218 REMARK 465 SER B 219 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 21 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 59 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 ARG A 228 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 277 CG CD CE NZ REMARK 470 GLU A 366 CG CD OE1 OE2 REMARK 470 LYS A 557 CG CD CE NZ REMARK 470 TYR A 577 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 611 CG CD OE1 NE2 REMARK 470 ASN B 40 CG OD1 ND2 REMARK 470 GLU B 75 CG CD OE1 OE2 REMARK 470 LYS B 105 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 557 C - N - CA ANGL. DEV. = 15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 78 58.18 37.01 REMARK 500 THR A 87 -168.56 -126.24 REMARK 500 PHE A 230 78.33 -114.91 REMARK 500 GLU A 236 15.91 52.79 REMARK 500 HIS A 288 -65.04 68.51 REMARK 500 PHE A 291 40.21 -93.56 REMARK 500 ASP A 306 65.24 72.60 REMARK 500 ARG A 399 35.69 -90.87 REMARK 500 ASN A 476 -126.16 50.07 REMARK 500 ASP A 535 35.51 74.32 REMARK 500 ASN B 38 44.71 -102.71 REMARK 500 ILE B 143 -50.47 -121.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1640 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 41 OE2 REMARK 620 2 HOH A2003 O 80.9 REMARK 620 3 HOH A2004 O 89.7 91.6 REMARK 620 4 HOH A2005 O 101.5 177.6 88.1 REMARK 620 5 HOH A2006 O 89.0 90.0 177.8 90.4 REMARK 620 6 HOH A2010 O 168.3 87.6 92.6 90.1 89.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1640 DBREF 4CGY A 2 753 UNP Q13472 TOP3A_HUMAN 2 753 DBREF 4CGY B 1 219 UNP Q9H9A7 RMI1_HUMAN 1 219 SEQADV 4CGY GLY A 0 UNP Q13472 EXPRESSION TAG SEQADV 4CGY ARG A 1 UNP Q13472 EXPRESSION TAG SEQRES 1 A 754 GLY ARG ILE PHE PRO VAL ALA ARG TYR ALA LEU ARG TRP SEQRES 2 A 754 LEU ARG ARG PRO GLU ASP ARG ALA PHE SER ARG ALA ALA SEQRES 3 A 754 MET GLU MET ALA LEU ARG GLY VAL ARG LYS VAL LEU CYS SEQRES 4 A 754 VAL ALA GLU LYS ASN ASP ALA ALA LYS GLY ILE ALA ASP SEQRES 5 A 754 LEU LEU SER ASN GLY ARG MET ARG ARG ARG GLU GLY LEU SEQRES 6 A 754 SER LYS PHE ASN LYS ILE TYR GLU PHE ASP TYR HIS LEU SEQRES 7 A 754 TYR GLY GLN ASN VAL THR MET VAL MET THR SER VAL SER SEQRES 8 A 754 GLY HIS LEU LEU ALA HIS ASP PHE GLN MET GLN PHE ARG SEQRES 9 A 754 LYS TRP GLN SER CYS ASN PRO LEU VAL LEU PHE GLU ALA SEQRES 10 A 754 GLU ILE GLU LYS TYR CYS PRO GLU ASN PHE VAL ASP ILE SEQRES 11 A 754 LYS LYS THR LEU GLU ARG GLU THR ARG GLN CYS GLN ALA SEQRES 12 A 754 LEU VAL ILE TRP THR ASP CYS ASP ARG GLU GLY GLU ASN SEQRES 13 A 754 ILE GLY PHE GLU ILE ILE HIS VAL CYS LYS ALA VAL LYS SEQRES 14 A 754 PRO ASN LEU GLN VAL LEU ARG ALA ARG PHE SER GLU ILE SEQRES 15 A 754 THR PRO HIS ALA VAL ARG THR ALA CYS GLU ASN LEU THR SEQRES 16 A 754 GLU PRO ASP GLN ARG VAL SER ASP ALA VAL ASP VAL ARG SEQRES 17 A 754 GLN GLU LEU ASP LEU ARG ILE GLY ALA ALA PHE THR ARG SEQRES 18 A 754 PHE GLN THR LEU ARG LEU GLN ARG ILE PHE PRO GLU VAL SEQRES 19 A 754 LEU ALA GLU GLN LEU ILE SER TYR GLY SER CYS GLN PHE SEQRES 20 A 754 PRO THR LEU GLY PHE VAL VAL GLU ARG PHE LYS ALA ILE SEQRES 21 A 754 GLN ALA PHE VAL PRO GLU ILE PHE HIS ARG ILE LYS VAL SEQRES 22 A 754 THR HIS ASP HIS LYS ASP GLY ILE VAL GLU PHE ASN TRP SEQRES 23 A 754 LYS ARG HIS ARG LEU PHE ASN HIS THR ALA CYS LEU VAL SEQRES 24 A 754 LEU TYR GLN LEU CYS VAL GLU ASP PRO MET ALA THR VAL SEQRES 25 A 754 VAL GLU VAL ARG SER LYS PRO LYS SER LYS TRP ARG PRO SEQRES 26 A 754 GLN ALA LEU ASP THR VAL GLU LEU GLU LYS LEU ALA SER SEQRES 27 A 754 ARG LYS LEU ARG ILE ASN ALA LYS GLU THR MET ARG ILE SEQRES 28 A 754 ALA GLU LYS LEU TYR THR GLN GLY TYR ILE SER TYR PRO SEQRES 29 A 754 ARG THR GLU THR ASN ILE PHE PRO ARG ASP LEU ASN LEU SEQRES 30 A 754 THR VAL LEU VAL GLU GLN GLN THR PRO ASP PRO ARG TRP SEQRES 31 A 754 GLY ALA PHE ALA GLN SER ILE LEU GLU ARG GLY GLY PRO SEQRES 32 A 754 THR PRO ARG ASN GLY ASN LYS SER ASP GLN ALA HIS PRO SEQRES 33 A 754 PRO ILE HIS PRO THR LYS TYR THR ASN ASN LEU GLN GLY SEQRES 34 A 754 ASP GLU GLN ARG LEU TYR GLU PHE ILE VAL ARG HIS PHE SEQRES 35 A 754 LEU ALA CYS CYS SER GLN ASP ALA GLN GLY GLN GLU THR SEQRES 36 A 754 THR VAL GLU ILE ASP ILE ALA GLN GLU ARG PHE VAL ALA SEQRES 37 A 754 HIS GLY LEU MET ILE LEU ALA ARG ASN TYR LEU ASP VAL SEQRES 38 A 754 TYR PRO TYR ASP HIS TRP SER ASP LYS ILE LEU PRO VAL SEQRES 39 A 754 TYR GLU GLN GLY SER HIS PHE GLN PRO SER THR VAL GLU SEQRES 40 A 754 MET VAL ASP GLY GLU THR SER PRO PRO LYS LEU LEU THR SEQRES 41 A 754 GLU ALA ASP LEU ILE ALA LEU MET GLU LYS HIS GLY ILE SEQRES 42 A 754 GLY THR ASP ALA THR HIS ALA GLU HIS ILE GLU THR ILE SEQRES 43 A 754 LYS ALA ARG MET TYR VAL GLY LEU THR PRO ASP LYS ARG SEQRES 44 A 754 PHE LEU PRO GLY HIS LEU GLY MET GLY LEU VAL GLU GLY SEQRES 45 A 754 TYR ASP SER MET GLY TYR GLU MET SER LYS PRO ASP LEU SEQRES 46 A 754 ARG ALA GLU LEU GLU ALA ASP LEU LYS LEU ILE CYS ASP SEQRES 47 A 754 GLY LYS LYS ASP LYS PHE VAL VAL LEU ARG GLN GLN VAL SEQRES 48 A 754 GLN LYS TYR LYS GLN VAL PHE ILE GLU ALA VAL ALA LYS SEQRES 49 A 754 ALA LYS LYS LEU ASP GLU ALA LEU ALA GLN TYR PHE GLY SEQRES 50 A 754 ASN GLY THR GLU LEU ALA GLN GLN GLU ASP ILE TYR PRO SEQRES 51 A 754 ALA MET PRO GLU PRO ILE ARG LYS CYS PRO GLN CYS ASN SEQRES 52 A 754 LYS ASP MET VAL LEU LYS THR LYS LYS ASN GLY GLY PHE SEQRES 53 A 754 TYR LEU SER CYS MET GLY PHE PRO GLU CYS ARG SER ALA SEQRES 54 A 754 VAL TRP LEU PRO ASP SER VAL LEU GLU ALA SER ARG ASP SEQRES 55 A 754 SER SER VAL CYS PRO VAL CYS GLN PRO HIS PRO VAL TYR SEQRES 56 A 754 ARG LEU LYS LEU LYS PHE LYS ARG GLY SER LEU PRO PRO SEQRES 57 A 754 THR MET PRO LEU GLU PHE VAL CYS CYS ILE GLY GLY CYS SEQRES 58 A 754 ASP ASP THR LEU ARG GLU ILE LEU ASP LEU ARG PHE SER SEQRES 1 B 219 MET ASN VAL THR SER ILE ALA LEU ARG ALA GLU THR TRP SEQRES 2 B 219 LEU LEU ALA ALA TRP HIS VAL LYS VAL PRO PRO MET TRP SEQRES 3 B 219 LEU GLU ALA CYS ILE ASN TRP ILE GLN GLU GLU ASN ASN SEQRES 4 B 219 ASN VAL ASN LEU SER GLN ALA GLN MET ASN LYS GLN VAL SEQRES 5 B 219 PHE GLU GLN TRP LEU LEU THR ASP LEU ARG ASP LEU GLU SEQRES 6 B 219 HIS PRO LEU LEU PRO ASP GLY ILE LEU GLU ILE PRO LYS SEQRES 7 B 219 GLY GLU LEU ASN GLY PHE TYR ALA LEU GLN ILE ASN SER SEQRES 8 B 219 LEU VAL ASP VAL SER GLN PRO ALA TYR SER GLN ILE GLN SEQRES 9 B 219 LYS LEU ARG GLY LYS ASN THR THR ASN ASP LEU VAL THR SEQRES 10 B 219 ALA GLU ALA GLN VAL THR PRO LYS PRO TRP GLU ALA LYS SEQRES 11 B 219 PRO SER ARG MET LEU MET LEU GLN LEU THR ASP GLY ILE SEQRES 12 B 219 VAL GLN ILE GLN GLY MET GLU TYR GLN PRO ILE PRO ILE SEQRES 13 B 219 LEU HIS SER ASP LEU PRO PRO GLY THR LYS ILE LEU ILE SEQRES 14 B 219 TYR GLY ASN ILE SER PHE ARG LEU GLY VAL LEU LEU LEU SEQRES 15 B 219 LYS PRO GLU ASN VAL LYS VAL LEU GLY GLY GLU VAL ASP SEQRES 16 B 219 ALA LEU LEU GLU GLU TYR ALA GLN GLU LYS VAL LEU ALA SEQRES 17 B 219 ARG LEU ILE GLY GLU PRO ASP LEU VAL VAL SER HET MG A1640 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG MG 2+ FORMUL 4 HOH *44(H2 O) HELIX 1 1 SER A 22 ARG A 31 1 10 HELIX 2 2 LYS A 42 ASN A 55 1 14 HELIX 3 3 GLN A 99 LYS A 104 1 6 HELIX 4 4 TRP A 105 CYS A 108 5 4 HELIX 5 5 ASN A 109 GLU A 115 5 7 HELIX 6 6 PRO A 123 ASN A 125 5 3 HELIX 7 7 PHE A 126 CYS A 140 1 15 HELIX 8 8 ASP A 150 ALA A 166 1 17 HELIX 9 9 THR A 182 ASN A 192 1 11 HELIX 10 10 ASP A 197 PHE A 230 1 34 HELIX 11 11 PHE A 230 ALA A 235 1 6 HELIX 12 12 CYS A 244 PHE A 262 1 19 HELIX 13 13 ASN A 292 GLU A 305 1 14 HELIX 14 14 ASP A 328 LYS A 339 1 12 HELIX 15 15 ASN A 343 GLN A 357 1 15 HELIX 16 16 ASN A 375 GLN A 382 1 8 HELIX 17 17 TRP A 389 ARG A 399 1 11 HELIX 18 18 GLN A 427 CYS A 445 1 19 HELIX 19 19 ARG A 475 VAL A 480 5 6 HELIX 20 20 THR A 519 GLY A 531 1 13 HELIX 21 21 THR A 537 ARG A 548 1 12 HELIX 22 22 GLY A 562 SER A 574 1 13 HELIX 23 23 PRO A 582 ASP A 597 1 16 HELIX 24 24 ASP A 601 LYS A 623 1 23 HELIX 25 25 ALA A 624 GLY A 636 1 13 HELIX 26 26 VAL B 3 HIS B 19 1 17 HELIX 27 27 PRO B 23 ASN B 38 1 16 HELIX 28 28 SER B 44 THR B 59 1 16 HELIX 29 29 ASP B 60 LEU B 64 5 5 HELIX 30 30 PRO B 98 ARG B 107 1 10 HELIX 31 31 THR B 112 VAL B 116 5 5 HELIX 32 32 LYS B 183 GLU B 185 5 3 HELIX 33 33 VAL B 194 TYR B 201 1 8 HELIX 34 34 ALA B 202 ILE B 211 1 10 SHEET 1 AA 6 ARG A 59 ARG A 61 0 SHEET 2 AA 6 ILE A 70 LEU A 77 -1 O ILE A 70 N ARG A 61 SHEET 3 AA 6 GLN A 80 SER A 88 -1 O GLN A 80 N LEU A 77 SHEET 4 AA 6 LYS A 35 ALA A 40 1 O VAL A 36 N VAL A 85 SHEET 5 AA 6 ALA A 142 TRP A 146 1 O ALA A 142 N LEU A 37 SHEET 6 AA 6 GLN A 172 ARG A 175 1 O GLN A 172 N LEU A 143 SHEET 1 AB 2 ALA A 95 PHE A 98 0 SHEET 2 AB 2 ILE A 118 TYR A 121 -1 O GLU A 119 N ASP A 97 SHEET 1 AC 7 HIS A 499 PHE A 500 0 SHEET 2 AC 7 ALA A 309 LYS A 321 -1 O ALA A 309 N PHE A 500 SHEET 3 AC 7 ALA A 449 ILE A 460 -1 O ALA A 449 N LYS A 321 SHEET 4 AC 7 GLU A 463 ALA A 474 -1 O GLU A 463 N ILE A 460 SHEET 5 AC 7 GLY A 279 TRP A 285 -1 O ASN A 284 N VAL A 466 SHEET 6 AC 7 ILE A 266 HIS A 276 -1 O ILE A 270 N TRP A 285 SHEET 7 AC 7 THR A 504 GLU A 511 -1 O THR A 504 N THR A 273 SHEET 1 AD 2 VAL A 551 LEU A 553 0 SHEET 2 AD 2 PHE A 559 PRO A 561 -1 O LEU A 560 N GLY A 552 SHEET 1 BA 8 LYS B 78 LEU B 81 0 SHEET 2 BA 8 ILE B 173 ARG B 176 -1 O ILE B 173 N LEU B 81 SHEET 3 BA 8 VAL B 179 LEU B 182 -1 O VAL B 179 N ARG B 176 SHEET 4 BA 8 GLN B 145 GLU B 150 1 O GLN B 147 N LEU B 180 SHEET 5 BA 8 LEU B 135 THR B 140 -1 O LEU B 135 N GLU B 150 SHEET 6 BA 8 TYR B 85 ASP B 94 -1 O GLN B 88 N THR B 140 SHEET 7 BA 8 LYS B 166 ILE B 169 -1 O ILE B 167 N LEU B 87 SHEET 8 BA 8 VAL B 187 GLY B 191 -1 O LYS B 188 N LEU B 168 LINK OE2 GLU A 41 MG MG A1640 1555 1555 2.10 LINK MG MG A1640 O HOH A2003 1555 1555 2.09 LINK MG MG A1640 O HOH A2004 1555 1555 2.10 LINK MG MG A1640 O HOH A2005 1555 1555 2.09 LINK MG MG A1640 O HOH A2006 1555 1555 2.09 LINK MG MG A1640 O HOH A2010 1555 1555 2.09 CISPEP 1 ASP A 556 LYS A 557 0 0.70 SITE 1 AC1 6 GLU A 41 HOH A2003 HOH A2004 HOH A2005 SITE 2 AC1 6 HOH A2006 HOH A2010 CRYST1 94.010 94.010 381.690 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010637 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010637 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002620 0.00000